CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 168 | A168V | A6966V | nonsyn | gCt | gTt | 2597 | 2597 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168A | A6966A | syn | gcT | gcC | 350 | 319 | 0.911429 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168A | A6966A | syn | gcT | gcG | 350 | 16 | 0.0457143 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168A | A6966A | syn | gcT | gcA | 350 | 15 | 0.0428571 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168S | A6966S | nonsyn | Gct | Tct | 178 | 177 | 0.994382 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168S | A6966S | nonsyn | GCt | AGt | 178 | 1 | 0.00561798 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168T | A6966T | nonsyn | Gct | Act | 121 | 121 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168del | A6966del | del | GCT | --- | 98 | 98 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168del1 | A6966del1 | del | gcT | gc- | 76 | 60 | 0.789474 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168del1 | A6966del1 | del | gCt | g-t | 76 | 15 | 0.197368 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168del1 | A6966del1 | del | GCt | -Tt | 76 | 1 | 0.0131579 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168del2 | A6966del2 | del | gCT | g-- | 11 | 11 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168G | A6966G | nonsyn | gCt | gGt | 10 | 7 | 0.7 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168G | A6966G | nonsyn | gCT | gGC | 10 | 2 | 0.2 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168G | A6966G | nonsyn | gCT | gGG | 10 | 1 | 0.1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168D | A6966D | nonsyn | gCt | gAt | 6 | 6 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168F | A6966F | nonsyn | GCt | TTt | 2 | 2 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168L | A6966L | nonsyn | GCt | CTt | 2 | 2 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168Y | A6966Y | nonsyn | GCt | TAt | 1 | 1 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168K | A6966K | nonsyn | GCT | AAA | 1 | 1 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168I | A6966I | nonsyn | GCt | ATt | 1 | 1 | 1 | 21160-21162 |
ORF1ab/nsp16 | 168 | A168N | A6966N | nonsyn | GCt | AAt | 1 | 1 | 1 | 21160-21162 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2597 | 2597 | All | 0.000497 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 771 | 771 | AY.4 | 0.0012 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 608 | 608 | AY.42 | 0.02446 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 319 | 350 | All | 0.000061 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 16 | 350 | All | 0.000003 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 15 | 350 | All | 0.000003 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 276 | 276 | B.1.570 | 0.811765 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 232 | 232 | B.1.346 | 0.304063 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 177 | 178 | All | 0.000034 |
ORF1ab/nsp16 | 168 | A168S | GCt | AGt | 1 | 178 | All | 0 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 147 | 147 | AY.4 | 0.000229 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 121 | 121 | All | 0.000023 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 98 | 98 | All | 0.000019 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 82 | 82 | B.1.1 | 0.001488 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 81 | 81 | B.1.1.7 | 0.000073 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 78 | 78 | AY.26 | 0.002208 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 60 | 76 | All | 0.000011 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 15 | 76 | All | 0.000003 |
ORF1ab/nsp16 | 168 | A168del1 | GCt | -Tt | 1 | 76 | All | 0 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 70 | 70 | AY.6 | 0.002879 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 45 | 47 | B.1.1.7 | 0.00004 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 2 | 47 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 45 | 45 | B.1.1 | 0.000816 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 43 | 43 | AY.118 | 0.002694 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 39 | 39 | AY.119 | 0.001377 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 31 | 31 | B.1.36 | 0.004523 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 24 | 24 | AY.3.1 | 0.002046 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 19 | 22 | B.1.617.2 | 0.000072 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 3 | 22 | B.1.617.2 | 0.000011 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 21 | 21 | B.1.1.307 | 0.053165 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 21 | 21 | B.1.497 | 0.00661 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 16 | 16 | AY.67 | 0.007428 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 14 | 15 | B.1.2 | 0.000123 |
ORF1ab/nsp16 | 168 | A168del1 | GCt | -Tt | 1 | 15 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 15 | 15 | B.1.258 | 0.000998 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 6 | 13 | B.1.617.1 | 0.000774 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 4 | 13 | B.1.617.1 | 0.000516 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 3 | 13 | B.1.617.1 | 0.000387 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 9 | 12 | B.1.2 | 0.000079 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 12 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 11 | 11 | All | 0.000002 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 11 | 11 | AY.99.2 | 0.001014 |
ORF1ab/nsp16 | 168 | A168G | gCt | gGt | 7 | 10 | All | 0.000001 |
ORF1ab/nsp16 | 168 | A168G | gCT | gGC | 2 | 10 | All | 0 |
ORF1ab/nsp16 | 168 | A168G | gCT | gGG | 1 | 10 | All | 0 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 8 | 9 | B.1.1.7 | 0.000007 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 9 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 7 | 7 | B.1.1.304 | 0.019663 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 5 | 7 | B.1.617.2 | 0.000019 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 2 | 7 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp16 | 168 | A168D | gCt | gAt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp16 | 168 | A168G | gCt | gGt | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp16 | 168 | A168G | gCT | gGC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp16 | 168 | A168G | gCT | gGG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 168 | A168S | GCt | AGt | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 3 | 3 | B.1.1.159 | 0.014019 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 168 | A168L | GCt | CTt | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 168 | A168F | GCt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 168 | A168G | gCT | gGC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 168 | A168G | gCt | gGt | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 168 | A168D | gCt | gAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 168 | A168G | gCt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AH.2 | 0.012048 |
ORF1ab/nsp16 | 168 | A168I | GCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 168 | A168N | GCt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 168 | A168K | GCT | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 168 | A168Y | GCt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 168 | A168L | GCt | CTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 168 | A168Y | GCt | TAt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 168 | A168D | gCt | gAt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 168 | A168K | GCT | AAA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 168 | A168F | GCt | TTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 168 | A168F | GCt | TTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp16 | 168 | A168T | Gct | Act | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 168 | A168N | GCt | AAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 168 | A168G | gCt | gGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 168 | A168D | gCt | gAt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 168 | A168del1 | gCt | g-t | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.258.6 | 0.019608 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 168 | A168G | gCt | gGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 168 | A168I | GCt | ATt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp16 | 168 | A168del2 | gCT | g-- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 168 | A168L | GCt | CTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 168 | A168D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp16 | 168 | A168D | gCt | gAt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp16 | 168 | A168del1 | gcT | gc- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 168 | A168S | Gct | Tct | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp16 | 168 | A168V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp16 | 168 | A168del | GCT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp16 | 168 | A168A | gcT | gcG | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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