CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 166

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16166S166SS6964SsyntcCtcT174016260.93448321154-21156
ORF1ab/nsp16166S166SS6964SsyntcCtcA17401110.063793121154-21156
ORF1ab/nsp16166S166SS6964SsyntcCtcG174030.0017241421154-21156
ORF1ab/nsp16166S166AS6964AnonsynTccGcc5405390.99814821154-21156
ORF1ab/nsp16166S166AS6964AnonsynTcCGcA54010.0018518521154-21156
ORF1ab/nsp16166S166delS6964deldelTCC---8888121154-21156
ORF1ab/nsp16166S166TS6964TnonsynTccAcc22210.95454521154-21156
ORF1ab/nsp16166S166TS6964TnonsynTcCAcA2210.045454521154-21156
ORF1ab/nsp16166S166YS6964YnonsyntCctAc1212121154-21156
ORF1ab/nsp16166S166PS6964PnonsynTccCcc12110.91666721154-21156
ORF1ab/nsp16166S166PS6964PnonsynTcCCcT1210.083333321154-21156
ORF1ab/nsp16166S166FS6964FnonsyntCctTc11100.90909121154-21156
ORF1ab/nsp16166S166FS6964FnonsyntCCtTT1110.090909121154-21156
ORF1ab/nsp16166S166LS6964LnonsynTCcCTc630.521154-21156
ORF1ab/nsp16166S166LS6964LnonsynTCCCTG610.16666721154-21156
ORF1ab/nsp16166S166LS6964LnonsyntCCtTA610.16666721154-21156
ORF1ab/nsp16166S166LS6964LnonsyntCCtTG610.16666721154-21156
ORF1ab/nsp16166S166CS6964CnonsyntCctGc33121154-21156
ORF1ab/nsp16166S166VS6964VnonsynTCcGTc11121154-21156
ORF1ab/nsp16166S166del2S6964del2delTCc--c11121154-21156
ORF1ab/nsp16166S166XS6964XnonsyntCCtAA11121154-21156
ORF1ab/nsp16166S166KS6964KnonsynTCCAAA11121154-21156
ORF1ab/nsp16166S166NS6964NnonsynTCcAAc11121154-21156
ORF1ab/nsp16166S166del1S6964del1deltcCtc-11121154-21156

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16166S166StcCtcT16261740All0.000311
ORF1ab/nsp16166S166StcCtcA1111740All0.000021
ORF1ab/nsp16166S166StcCtcG31740All0.000001
ORF1ab/nsp16166S166ATccGcc539540All0.000103
ORF1ab/nsp16166S166ATcCGcA1540All0
ORF1ab/nsp16166S166ATccGcc367367C.180.950777
ORF1ab/nsp16166S166StcCtcT310320AY.40.000482
ORF1ab/nsp16166S166StcCtcA10320AY.40.000016
ORF1ab/nsp16166S166StcCtcT287289B.1.4290.006753
ORF1ab/nsp16166S166StcCtcA2289B.1.4290.000047
ORF1ab/nsp16166S166StcCtcT202248B.1.1.70.000181
ORF1ab/nsp16166S166StcCtcA45248B.1.1.70.00004
ORF1ab/nsp16166S166StcCtcG1248B.1.1.70.000001
ORF1ab/nsp16166S166StcCtcT150154B.1.20.001321
ORF1ab/nsp16166S166StcCtcA4154B.1.20.000035
ORF1ab/nsp16166S166StcCtcT107110B.1.617.20.000403
ORF1ab/nsp16166S166StcCtcA3110B.1.617.20.000011
ORF1ab/nsp16166S166delTCC---8888All0.000017
ORF1ab/nsp16166S166StcCtcT8888AY.230.006138
ORF1ab/nsp16166S166StcCtcT6969AY.3.10.005883
ORF1ab/nsp16166S166ATccGcc6868B.1.1.10.022215
ORF1ab/nsp16166S166StcCtcT3240AY.440.000195
ORF1ab/nsp16166S166StcCtcA840AY.440.000049
ORF1ab/nsp16166S166ATccGcc3434C.190.918919
ORF1ab/nsp16166S166StcCtcT3133AY.250.000186
ORF1ab/nsp16166S166StcCtcA233AY.250.000012
ORF1ab/nsp16166S166delTCC---2525B.1.1.70.000022
ORF1ab/nsp16166S166StcCtcT2424B.1.1.5190.000953
ORF1ab/nsp16166S166TTccAcc2122All0.000004
ORF1ab/nsp16166S166TTcCAcA122All0
ORF1ab/nsp16166S166StcCtcT2022AY.1030.000124
ORF1ab/nsp16166S166StcCtcA222AY.1030.000012
ORF1ab/nsp16166S166StcCtcT2020B.1.1.1570.018265
ORF1ab/nsp16166S166StcCtcT2020B.1.160.190.714286
ORF1ab/nsp16166S166StcCtcT1616AY.1200.000595
ORF1ab/nsp16166S166StcCtcT1416AY.9.20.000514
ORF1ab/nsp16166S166StcCtcA216AY.9.20.000073
ORF1ab/nsp16166S166StcCtcT1414B.1.360.002043
ORF1ab/nsp16166S166StcCtcT1313AY.470.000404
ORF1ab/nsp16166S166StcCtcT1013B.10.000092
ORF1ab/nsp16166S166StcCtcA213B.10.000018
ORF1ab/nsp16166S166StcCtcG113B.10.000009
ORF1ab/nsp16166S166YtCctAc1212All0.000002
ORF1ab/nsp16166S166PTccCcc1112All0.000002
ORF1ab/nsp16166S166PTcCCcT112All0
ORF1ab/nsp16166S166StcCtcT1212C.370.001393
ORF1ab/nsp16166S166FtCctTc1011All0.000002
ORF1ab/nsp16166S166FtCCtTT111All0
ORF1ab/nsp16166S166StcCtcT1010B.1.1770.000132
ORF1ab/nsp16166S166ATccGcc99B.10.000082
ORF1ab/nsp16166S166StcCtcT79B.1.3510.000208
ORF1ab/nsp16166S166StcCtcA29B.1.3510.000059
ORF1ab/nsp16166S166ATccGcc99C.50.818182
ORF1ab/nsp16166S166StcCtcT78AY.430.000031
ORF1ab/nsp16166S166StcCtcA18AY.430.000004
ORF1ab/nsp16166S166StcCtcT67AY.30.00006
ORF1ab/nsp16166S166StcCtcA17AY.30.00001
ORF1ab/nsp16166S166StcCtcT67AY.420.000241
ORF1ab/nsp16166S166StcCtcA17AY.420.00004
ORF1ab/nsp16166S166delTCC---77AY.430.000031
ORF1ab/nsp16166S166StcCtcA77Q.80.001154
ORF1ab/nsp16166S166LTCcCTc36All0.000001
ORF1ab/nsp16166S166LTCCCTG16All0
ORF1ab/nsp16166S166LtCCtTG16All0
ORF1ab/nsp16166S166LtCCtTA16All0
ORF1ab/nsp16166S166StcCtcT66AY.1190.000212
ORF1ab/nsp16166S166StcCtcT66AY.320.003195
ORF1ab/nsp16166S166StcCtcT56AY.4.20.000108
ORF1ab/nsp16166S166StcCtcA16AY.4.20.000022
ORF1ab/nsp16166S166StcCtcT66B.1.10.000109
ORF1ab/nsp16166S166StcCtcT66B.1.3690.001711
ORF1ab/nsp16166S166StcCtcA36B.1.5960.000261
ORF1ab/nsp16166S166StcCtcT36B.1.5960.000261
ORF1ab/nsp16166S166StcCtcA66C.360.005464
ORF1ab/nsp16166S166StcCtcT55AY.1130.000712
ORF1ab/nsp16166S166ATccGcc55AY.1180.000313
ORF1ab/nsp16166S166TTccAcc55B.10.000046
ORF1ab/nsp16166S166PTccCcc55B.10.000046
ORF1ab/nsp16166S166ATccGcc55B.1.1.3720.003444
ORF1ab/nsp16166S166StcCtcT55B.1.4270.000252
ORF1ab/nsp16166S166StcCtcT55B.1.5680.005556
ORF1ab/nsp16166S166ATccGcc55C.200.384615
ORF1ab/nsp16166S166StcCtcT44A.23.10.002817
ORF1ab/nsp16166S166StcCtcT44AY.390.000099
ORF1ab/nsp16166S166StcCtcT44AY.50.000083
ORF1ab/nsp16166S166delTCC---44B.10.000037
ORF1ab/nsp16166S166delTCC---44B.1.20.000035
ORF1ab/nsp16166S166delTCC---44B.1.5250.000453
ORF1ab/nsp16166S166ATccGcc44B.1.5260.000094
ORF1ab/nsp16166S166StcCtcT44P.10.000063
ORF1ab/nsp16166S166CtCctGc33All0.000001
ORF1ab/nsp16166S166StcCtcT33AY.260.000085
ORF1ab/nsp16166S166delTCC---33AY.4.50.000322
ORF1ab/nsp16166S166StcCtcT33AY.460.000312
ORF1ab/nsp16166S166StcCtcT33AY.610.000314
ORF1ab/nsp16166S166StcCtcT33AY.75.10.000541
ORF1ab/nsp16166S166YtCctAc33B.10.000027
ORF1ab/nsp16166S166ATccGcc33B.1.10.000054
ORF1ab/nsp16166S166StcCtcT33B.1.1.280.000934
ORF1ab/nsp16166S166ATccGcc33B.1.1.70.000003
ORF1ab/nsp16166S166FtCctTc23B.1.1.70.000002
ORF1ab/nsp16166S166FtCCtTT13B.1.1.70.000001
ORF1ab/nsp16166S166delTCC---33B.1.1770.00004
ORF1ab/nsp16166S166ATccGcc33B.1.6210.000266
ORF1ab/nsp16166S166delTCC---33P.10.000047
ORF1ab/nsp16166S166delTCC---33P.1.150.000697
ORF1ab/nsp16166S166StcCtcT220.111111
ORF1ab/nsp16166S166delTCC---220.111111
ORF1ab/nsp16166S166StcCtcT22A0.000774
ORF1ab/nsp16166S166YtCctAc22A.2.40.006734
ORF1ab/nsp16166S166ATccGcc22AY.1000.000092
ORF1ab/nsp16166S166StcCtcT22AY.1020.000053
ORF1ab/nsp16166S166StcCtcT22AY.1160.000574
ORF1ab/nsp16166S166StcCtcT22AY.1210.000271
ORF1ab/nsp16166S166ATcCGcA12AY.250.000006
ORF1ab/nsp16166S166ATccGcc12AY.250.000006
ORF1ab/nsp16166S166StcCtcT22AY.290.000032
ORF1ab/nsp16166S166StcCtcT22AY.330.000134
ORF1ab/nsp16166S166ATccGcc22AY.390.000049
ORF1ab/nsp16166S166TTccAcc22AY.40.000003
ORF1ab/nsp16166S166delTCC---22AY.40.000003
ORF1ab/nsp16166S166StcCtcT22AY.4.50.000215
ORF1ab/nsp16166S166StcCtcT22AY.650.001066
ORF1ab/nsp16166S166delTCC---22AY.750.000112
ORF1ab/nsp16166S166LTCcCTc22B.10.000018
ORF1ab/nsp16166S166FtCctTc22B.10.000018
ORF1ab/nsp16166S166ATccGcc22B.1.1390.001466
ORF1ab/nsp16166S166StcCtcT22B.1.177.820.000955
ORF1ab/nsp16166S166StcCtcT22B.1.2210.000142
ORF1ab/nsp16166S166StcCtcA12B.1.3110.000275
ORF1ab/nsp16166S166StcCtcT12B.1.3110.000275
ORF1ab/nsp16166S166TTcCAcA12B.1.3510.00003
ORF1ab/nsp16166S166TTccAcc12B.1.3510.00003
ORF1ab/nsp16166S166StcCtcT12B.1.36.290.000517
ORF1ab/nsp16166S166StcCtcA12B.1.36.290.000517
ORF1ab/nsp16166S166StcCtcT22B.1.4530.006472
ORF1ab/nsp16166S166ATccGcc22B.1.4860.222222
ORF1ab/nsp16166S166ATccGcc22B.1.617.20.000008
ORF1ab/nsp16166S166TTccAcc22B.1.617.20.000008
ORF1ab/nsp16166S166StcCtcT22R.10.00018
ORF1ab/nsp16166S166delTCC---11A0.000387
ORF1ab/nsp16166S166TTccAcc11A.20.000662
ORF1ab/nsp16166S166FtCctTc11A.2.40.003367
ORF1ab/nsp16166S166StcCtcT11A.210.00277
ORF1ab/nsp16166S166StcCtcT11A.60.005128
ORF1ab/nsp16166S166StcCtcT11AD.20.000219
ORF1ab/nsp16166S166ATccGcc11AE.60.038462
ORF1ab/nsp16166S166NTCcAAc11All0
ORF1ab/nsp16166S166XtCCtAA11All0
ORF1ab/nsp16166S166VTCcGTc11All0
ORF1ab/nsp16166S166del2TCc--c11All0
ORF1ab/nsp16166S166del1tcCtc-11All0
ORF1ab/nsp16166S166KTCCAAA11All0
ORF1ab/nsp16166S166delTCC---11AV.10.005051
ORF1ab/nsp16166S166delTCC---11AY.1000.000046
ORF1ab/nsp16166S166StcCtcT11AY.1000.000046
ORF1ab/nsp16166S166StcCtcT11AY.1010.00049
ORF1ab/nsp16166S166delTCC---11AY.1030.000006
ORF1ab/nsp16166S166LTCCCTG11AY.1070.000466
ORF1ab/nsp16166S166StcCtcA11AY.1100.000113
ORF1ab/nsp16166S166ATccGcc11AY.1170.000085
ORF1ab/nsp16166S166StcCtcT11AY.130.000161
ORF1ab/nsp16166S166delTCC---11AY.190.00114
ORF1ab/nsp16166S166StcCtcT11AY.200.000039
ORF1ab/nsp16166S166FtCctTc11AY.23.10.000417
ORF1ab/nsp16166S166CtCctGc11AY.23.10.000417
ORF1ab/nsp16166S166delTCC---11AY.250.000006
ORF1ab/nsp16166S166delTCC---11AY.330.000067
ORF1ab/nsp16166S166StcCtcT11AY.360.000148
ORF1ab/nsp16166S166delTCC---11AY.390.000025
ORF1ab/nsp16166S166delTCC---11AY.420.00004
ORF1ab/nsp16166S166del2TCc--c11AY.430.000004
ORF1ab/nsp16166S166TTccAcc11AY.430.000004
ORF1ab/nsp16166S166TTccAcc11AY.440.000006
ORF1ab/nsp16166S166StcCtcT11AY.450.000122
ORF1ab/nsp16166S166StcCtcA11AY.46.50.000198
ORF1ab/nsp16166S166ATccGcc11AY.470.000031
ORF1ab/nsp16166S166ATccGcc11AY.50.000021
ORF1ab/nsp16166S166TTccAcc11AY.50.000021
ORF1ab/nsp16166S166StcCtcT11AY.5.40.000277
ORF1ab/nsp16166S166StcCtcT11AY.540.000095
ORF1ab/nsp16166S166StcCtcT11AY.550.000917
ORF1ab/nsp16166S166StcCtcT11AY.60.000041
ORF1ab/nsp16166S166StcCtcT11AY.620.000436
ORF1ab/nsp16166S166ATccGcc11AY.710.000475
ORF1ab/nsp16166S166StcCtcT11AY.740.000116
ORF1ab/nsp16166S166StcCtcT11AY.750.000056
ORF1ab/nsp16166S166TTccAcc11AY.760.004831
ORF1ab/nsp16166S166StcCtcT11AY.920.000287
ORF1ab/nsp16166S166FtCctTc11AY.990.001049
ORF1ab/nsp16166S166StcCtcA11AY.99.10.001553
ORF1ab/nsp16166S166delTCC---11AY.99.10.001553
ORF1ab/nsp16166S166StcCtcT11AY.99.20.000092
ORF1ab/nsp16166S166ATccGcc11B0.000128
ORF1ab/nsp16166S166PTccCcc11B0.000128
ORF1ab/nsp16166S166delTCC---11B0.000128
ORF1ab/nsp16166S166VTCcGTc11B.10.000009
ORF1ab/nsp16166S166delTCC---11B.1.10.000018
ORF1ab/nsp16166S166CtCctGc11B.1.10.000018
ORF1ab/nsp16166S166YtCctAc11B.1.1.10.000327
ORF1ab/nsp16166S166StcCtcT11B.1.1.1580.012195
ORF1ab/nsp16166S166StcCtcT11B.1.1.2140.000055
ORF1ab/nsp16166S166StcCtcT11B.1.1.2160.00089
ORF1ab/nsp16166S166PTccCcc11B.1.1.250.000569
ORF1ab/nsp16166S166StcCtcA11B.1.1.2580.003257
ORF1ab/nsp16166S166StcCtcT11B.1.1.2970.002237
ORF1ab/nsp16166S166delTCC---11B.1.1.3110.000358
ORF1ab/nsp16166S166FtCctTc11B.1.1.3170.000412
ORF1ab/nsp16166S166StcCtcT11B.1.1.3180.000302
ORF1ab/nsp16166S166StcCtcA11B.1.1.3260.001761
ORF1ab/nsp16166S166StcCtcT11B.1.1.390.00051
ORF1ab/nsp16166S166StcCtcT11B.1.1.500.000679
ORF1ab/nsp16166S166LtCCtTA11B.1.1.70.000001
ORF1ab/nsp16166S166YtCctAc11B.1.1.70.000001
ORF1ab/nsp16166S166TTccAcc11B.1.1.70.000001
ORF1ab/nsp16166S166StcCtcA11B.1.110.30.000718
ORF1ab/nsp16166S166ATccGcc11B.1.1600.000031
ORF1ab/nsp16166S166PTccCcc11B.1.1600.000031
ORF1ab/nsp16166S166StcCtcT11B.1.1600.000031
ORF1ab/nsp16166S166TTccAcc11B.1.1600.000031
ORF1ab/nsp16166S166YtCctAc11B.1.1770.000013
ORF1ab/nsp16166S166StcCtcT11B.1.177.420.000894
ORF1ab/nsp16166S166FtCctTc11B.1.177.440.000519
ORF1ab/nsp16166S166TTccAcc11B.1.177.440.000519
ORF1ab/nsp16166S166LTCcCTc11B.1.177.440.000519
ORF1ab/nsp16166S166PTccCcc11B.1.177.440.000519
ORF1ab/nsp16166S166ATccGcc11B.1.177.440.000519
ORF1ab/nsp16166S166delTCC---11B.1.177.500.004695
ORF1ab/nsp16166S166delTCC---11B.1.177.540.000606
ORF1ab/nsp16166S166StcCtcT11B.1.177.600.000218
ORF1ab/nsp16166S166delTCC---11B.1.177.600.000218
ORF1ab/nsp16166S166delTCC---11B.1.177.680.015152
ORF1ab/nsp16166S166FtCctTc11B.1.177.750.001041
ORF1ab/nsp16166S166delTCC---11B.1.177.830.001481
ORF1ab/nsp16166S166ATccGcc11B.1.20.000009
ORF1ab/nsp16166S166PTccCcc11B.1.20.000009
ORF1ab/nsp16166S166YtCctAc11B.1.20.000009
ORF1ab/nsp16166S166TTccAcc11B.1.2140.003663
ORF1ab/nsp16166S166StcCtcT11B.1.220.001318
ORF1ab/nsp16166S166StcCtcT11B.1.2340.000132
ORF1ab/nsp16166S166TTccAcc11B.1.2400.000216
ORF1ab/nsp16166S166StcCtcT11B.1.2580.000067
ORF1ab/nsp16166S166delTCC---11B.1.2580.000067
ORF1ab/nsp16166S166StcCtcT11B.1.3480.018182
ORF1ab/nsp16166S166YtCctAc11B.1.3490.000715
ORF1ab/nsp16166S166ATccGcc11B.1.3510.00003
ORF1ab/nsp16166S166NTCcAAc11B.1.3510.00003
ORF1ab/nsp16166S166YtCctAc11B.1.3510.00003
ORF1ab/nsp16166S166XtCCtAA11B.1.3510.00003
ORF1ab/nsp16166S166KTCCAAA11B.1.3510.00003
ORF1ab/nsp16166S166LtCCtTG11B.1.360.000146
ORF1ab/nsp16166S166CtCctGc11B.1.3980.002976
ORF1ab/nsp16166S166ATccGcc11B.1.4280.00102
ORF1ab/nsp16166S166StcCtcT11B.1.438.10.000107
ORF1ab/nsp16166S166StcCtcT11B.1.4600.017857
ORF1ab/nsp16166S166StcCtcT11B.1.4700.001404
ORF1ab/nsp16166S166StcCtcT11B.1.4970.000315
ORF1ab/nsp16166S166StcCtcT11B.1.5260.000024
ORF1ab/nsp16166S166StcCtcT11B.1.5270.003704
ORF1ab/nsp16166S166TTccAcc11B.1.5600.00463
ORF1ab/nsp16166S166StcCtcG11B.1.5770.000687
ORF1ab/nsp16166S166delTCC---11B.1.5960.000087
ORF1ab/nsp16166S166delTCC---11B.1.617.10.000129
ORF1ab/nsp16166S166StcCtcT11B.1.617.10.000129
ORF1ab/nsp16166S166PTcCCcT11B.1.617.20.000004
ORF1ab/nsp16166S166delTCC---11B.1.617.20.000004
ORF1ab/nsp16166S166delTCC---11B.1.6200.000946
ORF1ab/nsp16166S166delTCC---11B.1.6300.005236
ORF1ab/nsp16166S166YtCctAc11B.1.6370.000073
ORF1ab/nsp16166S166StcCtcT11B.1.6370.000073
ORF1ab/nsp16166S166StcCtcT11B.60.00091
ORF1ab/nsp16166S166ATccGcc11C.30.10.006711
ORF1ab/nsp16166S166StcCtcA11D.20.000075
ORF1ab/nsp16166S166PTccCcc11P.10.000016
ORF1ab/nsp16166S166del1tcCtc-11P.10.000016
ORF1ab/nsp16166S166ATccGcc11P.10.000016
ORF1ab/nsp16166S166StcCtcT11P.1.10.000318
ORF1ab/nsp16166S166StcCtcT11P.1.100.000269
ORF1ab/nsp16166S166delTCC---11P.1.120.000484
ORF1ab/nsp16166S166StcCtcT11P.1.160.000374
ORF1ab/nsp16166S166StcCtcT11Q.10.000126
ORF1ab/nsp16166S166delTCC---11Q.80.000165