CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 145

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16145S145SS6943SsyntcTtcC5565430.97661921091-21093
ORF1ab/nsp16145S145SS6943SsyntcTtcA556110.019784221091-21093
ORF1ab/nsp16145S145SS6943SsyntcTtcG55620.0035971221091-21093
ORF1ab/nsp16145S145PS6943PnonsynTctCct1051030.98095221091-21093
ORF1ab/nsp16145S145PS6943PnonsynTcTCcC10510.0095238121091-21093
ORF1ab/nsp16145S145PS6943PnonsynTcTCcA10510.0095238121091-21093
ORF1ab/nsp16145S145delS6943deldelTCT---4242121091-21093
ORF1ab/nsp16145S145TS6943TnonsynTctAct22200.90909121091-21093
ORF1ab/nsp16145S145TS6943TnonsynTcTAcC2210.045454521091-21093
ORF1ab/nsp16145S145TS6943TnonsynTcTAcA2210.045454521091-21093
ORF1ab/nsp16145S145YS6943YnonsyntCttAt1919121091-21093
ORF1ab/nsp16145S145FS6943FnonsyntCttTt17150.88235321091-21093
ORF1ab/nsp16145S145FS6943FnonsyntCTtTC1720.11764721091-21093
ORF1ab/nsp16145S145AS6943AnonsynTctGct1515121091-21093
ORF1ab/nsp16145S145CS6943CnonsyntCttGt22121091-21093
ORF1ab/nsp16145S145del1S6943del1deltcTtc-210.521091-21093
ORF1ab/nsp16145S145del1S6943del1deltCtt-t210.521091-21093
ORF1ab/nsp16145S145LS6943LnonsynTCtCTt210.521091-21093
ORF1ab/nsp16145S145LS6943LnonsynTCTCTC210.521091-21093
ORF1ab/nsp16145S145IS6943InonsynTCtATt210.521091-21093
ORF1ab/nsp16145S145IS6943InonsynTCTATC210.521091-21093
ORF1ab/nsp16145S145NS6943NnonsynTCtAAt11121091-21093
ORF1ab/nsp16145S145KS6943KnonsynTCTAAA11121091-21093
ORF1ab/nsp16145S145del2S6943del2delTCt--t11121091-21093
ORF1ab/nsp16145S145XS6943XnonsyntCTtAA11121091-21093

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16145S145StcTtcC543556All0.000104
ORF1ab/nsp16145S145StcTtcA11556All0.000002
ORF1ab/nsp16145S145StcTtcG2556All0
ORF1ab/nsp16145S145StcTtcC333333B.1.1.40.991071
ORF1ab/nsp16145S145StcTtcC128129AY.40.000199
ORF1ab/nsp16145S145StcTtcA1129AY.40.000002
ORF1ab/nsp16145S145PTctCct103105All0.00002
ORF1ab/nsp16145S145PTcTCcC1105All0
ORF1ab/nsp16145S145PTcTCcA1105All0
ORF1ab/nsp16145S145PTctCct6868AY.430.000301
ORF1ab/nsp16145S145delTCT---4242All0.000008
ORF1ab/nsp16145S145TTctAct2022All0.000004
ORF1ab/nsp16145S145TTcTAcC122All0
ORF1ab/nsp16145S145TTcTAcA122All0
ORF1ab/nsp16145S145YtCttAt1919All0.000004
ORF1ab/nsp16145S145FtCttTt1517All0.000003
ORF1ab/nsp16145S145FtCTtTC217All0
ORF1ab/nsp16145S145ATctGct1515All0.000003
ORF1ab/nsp16145S145PTctCct1414B.1.20.000123
ORF1ab/nsp16145S145delTCT---1212B.1.1.70.000011
ORF1ab/nsp16145S145StcTtcC910B.1.1.70.000008
ORF1ab/nsp16145S145StcTtcA110B.1.1.70.000001
ORF1ab/nsp16145S145PTctCct99AY.200.00035
ORF1ab/nsp16145S145StcTtcC99AY.880.007958
ORF1ab/nsp16145S145TTctAct77AY.390.000173
ORF1ab/nsp16145S145StcTtcC77B.1.360.001021
ORF1ab/nsp16145S145StcTtcC67B.1.617.20.000023
ORF1ab/nsp16145S145StcTtcA17B.1.617.20.000004
ORF1ab/nsp16145S145StcTtcC66AY.430.000027
ORF1ab/nsp16145S145StcTtcC66B.1.4970.001889
ORF1ab/nsp16145S145StcTtcC66B.1.6370.000438
ORF1ab/nsp16145S145StcTtcC55AY.1190.000177
ORF1ab/nsp16145S145StcTtcA35AY.390.000074
ORF1ab/nsp16145S145StcTtcC25AY.390.000049
ORF1ab/nsp16145S145delTCT---55AY.40.000008
ORF1ab/nsp16145S145YtCttAt55B.10.000046
ORF1ab/nsp16145S145StcTtcC55B.1.20.000044
ORF1ab/nsp16145S145ATctGct55B.1.617.20.000019
ORF1ab/nsp16145S145delTCT---44AY.4.50.00043
ORF1ab/nsp16145S145ATctGct33AY.30.00003
ORF1ab/nsp16145S145PTctCct33AY.40.000005
ORF1ab/nsp16145S145YtCttAt33AY.430.000013
ORF1ab/nsp16145S145TTctAct33AY.430.000013
ORF1ab/nsp16145S145PTctCct33AY.440.000018
ORF1ab/nsp16145S145StcTtcC23B.10.000018
ORF1ab/nsp16145S145PTctCct23B.10.000018
ORF1ab/nsp16145S145FtCttTt23B.10.000018
ORF1ab/nsp16145S145StcTtcA13B.10.000009
ORF1ab/nsp16145S145PTcTCcC13B.10.000009
ORF1ab/nsp16145S145FtCTtTC13B.10.000009
ORF1ab/nsp16145S145delTCT---33P.1.150.000697
ORF1ab/nsp16145S145FtCttTt220.111111
ORF1ab/nsp16145S145delTCT---220.111111
ORF1ab/nsp16145S145TTctAct120.055556
ORF1ab/nsp16145S145TTcTAcA120.055556
ORF1ab/nsp16145S145CtCttGt22All0
ORF1ab/nsp16145S145del1tcTtc-12All0
ORF1ab/nsp16145S145ITCTATC12All0
ORF1ab/nsp16145S145ITCtATt12All0
ORF1ab/nsp16145S145LTCTCTC12All0
ORF1ab/nsp16145S145LTCtCTt12All0
ORF1ab/nsp16145S145del1tCtt-t12All0
ORF1ab/nsp16145S145ATctGct22AY.1000.000092
ORF1ab/nsp16145S145ATctGct22AY.1030.000012
ORF1ab/nsp16145S145ATctGct22AY.40.000003
ORF1ab/nsp16145S145StcTtcC22AY.440.000012
ORF1ab/nsp16145S145YtCttAt22B0.000256
ORF1ab/nsp16145S145TTctAct12B.10.000009
ORF1ab/nsp16145S145LTCtCTt12B.10.000009
ORF1ab/nsp16145S145LTCTCTC12B.10.000009
ORF1ab/nsp16145S145ITCtATt12B.10.000009
ORF1ab/nsp16145S145ITCTATC12B.10.000009
ORF1ab/nsp16145S145TTcTAcC12B.10.000009
ORF1ab/nsp16145S145StcTtcC22B.1.2210.000142
ORF1ab/nsp16145S145TTctAct22B.1.4290.000047
ORF1ab/nsp16145S145delTCT---22B.1.617.20.000008
ORF1ab/nsp16145S145YtCttAt110.055556
ORF1ab/nsp16145S145StcTtcA110.055556
ORF1ab/nsp16145S145NTCtAAt110.055556
ORF1ab/nsp16145S145KTCTAAA110.055556
ORF1ab/nsp16145S145XtCTtAA110.055556
ORF1ab/nsp16145S145YtCttAt11A0.000387
ORF1ab/nsp16145S145StcTtcA11A.20.000662
ORF1ab/nsp16145S145KTCTAAA11All0
ORF1ab/nsp16145S145NTCtAAt11All0
ORF1ab/nsp16145S145XtCTtAA11All0
ORF1ab/nsp16145S145del2TCt--t11All0
ORF1ab/nsp16145S145delTCT---11AY.1030.000006
ORF1ab/nsp16145S145TTctAct11AY.1030.000006
ORF1ab/nsp16145S145YtCttAt11AY.1180.000063
ORF1ab/nsp16145S145delTCT---11AY.1200.000037
ORF1ab/nsp16145S145PTcTCcA11AY.120.10.000321
ORF1ab/nsp16145S145PTctCct11AY.230.00007
ORF1ab/nsp16145S145StcTtcC11AY.230.00007
ORF1ab/nsp16145S145StcTtcC11AY.240.000431
ORF1ab/nsp16145S145PTctCct11AY.250.000006
ORF1ab/nsp16145S145delTCT---11AY.330.000067
ORF1ab/nsp16145S145StcTtcC11AY.360.000148
ORF1ab/nsp16145S145FtCttTt11AY.40.000002
ORF1ab/nsp16145S145PTctCct11AY.420.00004
ORF1ab/nsp16145S145YtCttAt11AY.420.00004
ORF1ab/nsp16145S145delTCT---11AY.430.000004
ORF1ab/nsp16145S145FtCTtTC11AY.440.000006
ORF1ab/nsp16145S145del1tCtt-t11AY.440.000006
ORF1ab/nsp16145S145StcTtcC11AY.50.000021
ORF1ab/nsp16145S145YtCttAt11AY.520.000814
ORF1ab/nsp16145S145StcTtcC11AY.680.000274
ORF1ab/nsp16145S145StcTtcC11AY.980.000079
ORF1ab/nsp16145S145StcTtcG11B.1.10.000018
ORF1ab/nsp16145S145FtCttTt11B.1.10.000018
ORF1ab/nsp16145S145TTctAct11B.1.10.000018
ORF1ab/nsp16145S145TTctAct11B.1.1.2530.002506
ORF1ab/nsp16145S145ATctGct11B.1.1.2980.000862
ORF1ab/nsp16145S145delTCT---11B.1.1.3110.000358
ORF1ab/nsp16145S145YtCttAt11B.1.1.70.000001
ORF1ab/nsp16145S145FtCttTt11B.1.1.70.000001
ORF1ab/nsp16145S145TTctAct11B.1.1.70.000001
ORF1ab/nsp16145S145del2TCt--t11B.1.1.70.000001
ORF1ab/nsp16145S145del1tcTtc-11B.1.1.70.000001
ORF1ab/nsp16145S145FtCttTt11B.1.1770.000013
ORF1ab/nsp16145S145delTCT---11B.1.1770.000013
ORF1ab/nsp16145S145TTctAct11B.1.177.120.000152
ORF1ab/nsp16145S145CtCttGt11B.1.177.40.000211
ORF1ab/nsp16145S145delTCT---11B.1.177.540.000606
ORF1ab/nsp16145S145delTCT---11B.1.177.620.001192
ORF1ab/nsp16145S145delTCT---11B.1.177.70.000165
ORF1ab/nsp16145S145StcTtcC11B.1.177.750.001041
ORF1ab/nsp16145S145delTCT---11B.1.177.90.001332
ORF1ab/nsp16145S145FtCttTt11B.1.20.000009
ORF1ab/nsp16145S145CtCttGt11B.1.20.000009
ORF1ab/nsp16145S145TTctAct11B.1.20.000009
ORF1ab/nsp16145S145StcTtcC11B.1.2580.000067
ORF1ab/nsp16145S145delTCT---11B.1.2580.000067
ORF1ab/nsp16145S145YtCttAt11B.1.3010.005917
ORF1ab/nsp16145S145FtCttTt11B.1.3110.000275
ORF1ab/nsp16145S145delTCT---11B.1.360.000146
ORF1ab/nsp16145S145FtCttTt11B.1.36.10.00114
ORF1ab/nsp16145S145StcTtcC11B.1.3660.004878
ORF1ab/nsp16145S145FtCttTt11B.1.3960.000706
ORF1ab/nsp16145S145StcTtcC11B.1.4290.000024
ORF1ab/nsp16145S145delTCT---11B.1.5250.000113
ORF1ab/nsp16145S145StcTtcC11B.1.5260.000024
ORF1ab/nsp16145S145StcTtcC11B.1.5680.001111
ORF1ab/nsp16145S145StcTtcC11B.1.5750.000303
ORF1ab/nsp16145S145FtCttTt11B.1.5960.000087
ORF1ab/nsp16145S145FtCttTt11B.1.617.20.000004
ORF1ab/nsp16145S145delTCT---11B.1.6200.000946
ORF1ab/nsp16145S145StcTtcC11B.1.6210.000089
ORF1ab/nsp16145S145YtCttAt11B.1.6230.000536
ORF1ab/nsp16145S145StcTtcA11B.400.000364
ORF1ab/nsp16145S145StcTtcG11B.550.00295
ORF1ab/nsp16145S145YtCttAt11B.60.00091
ORF1ab/nsp16145S145StcTtcC11B.6.80.008264
ORF1ab/nsp16145S145FtCttTt11D.20.000075
ORF1ab/nsp16145S145PTctCct11D.20.000075
ORF1ab/nsp16145S145StcTtcA11P.10.000016