CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 141

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16141K141RK6939RnonsynaAaaGa10071007121079-21081
ORF1ab/nsp16141K141QK6939QnonsynAaaCaa539539121079-21081
ORF1ab/nsp16141K141KK6939KsynaaAaaG219219121079-21081
ORF1ab/nsp16141K141NK6939NnonsynaaAaaC81520.64197521079-21081
ORF1ab/nsp16141K141NK6939NnonsynaaAaaT81290.35802521079-21081
ORF1ab/nsp16141K141TK6939TnonsynaAaaCa6161121079-21081
ORF1ab/nsp16141K141EK6939EnonsynAaaGaa5151121079-21081
ORF1ab/nsp16141K141delK6939deldelAAA---5050121079-21081
ORF1ab/nsp16141K141IK6939InonsynaAaaTa77121079-21081
ORF1ab/nsp16141K141del1K6939del1delAaa-aa640.66666721079-21081
ORF1ab/nsp16141K141del1K6939del1delaaAaa-620.33333321079-21081
ORF1ab/nsp16141K141XK6939XnonsynAaaTaa33121079-21081
ORF1ab/nsp16141K141GK6939GnonsynAAAGGT22121079-21081

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16141K141RaAaaGa10071007All0.000193
ORF1ab/nsp16141K141RaAaaGa776776B.1.3611
ORF1ab/nsp16141K141QAaaCaa539539All0.000103
ORF1ab/nsp16141K141QAaaCaa525525B.1.1.70.00047
ORF1ab/nsp16141K141KaaAaaG219219All0.000042
ORF1ab/nsp16141K141NaaAaaC5281All0.00001
ORF1ab/nsp16141K141NaaAaaT2981All0.000006
ORF1ab/nsp16141K141TaAaaCa6161All0.000012
ORF1ab/nsp16141K141RaAaaGa5353B.10.000485
ORF1ab/nsp16141K141EAaaGaa5151All0.00001
ORF1ab/nsp16141K141delAAA---5050All0.00001
ORF1ab/nsp16141K141KaaAaaG4949B.1.10.000889
ORF1ab/nsp16141K141KaaAaaG4848B.1.1.70.000043
ORF1ab/nsp16141K141RaAaaGa4444B.1.20.000387
ORF1ab/nsp16141K141TaAaaCa4141AY.40.000064
ORF1ab/nsp16141K141KaaAaaG4141B.1.5260.000964
ORF1ab/nsp16141K141RaAaaGa2121B.1.1.70.000019
ORF1ab/nsp16141K141NaaAaaC1520B.1.1.70.000013
ORF1ab/nsp16141K141NaaAaaT520B.1.1.70.000004
ORF1ab/nsp16141K141EAaaGaa1919B.1.438.10.002038
ORF1ab/nsp16141K141KaaAaaG1717B.1.5510.021935
ORF1ab/nsp16141K141NaaAaaC1313AY.430.000058
ORF1ab/nsp16141K141delAAA---1313B.1.1.70.000012
ORF1ab/nsp16141K141EAaaGaa1212B.1.617.20.000045
ORF1ab/nsp16141K141RaAaaGa1111AY.330.000735
ORF1ab/nsp16141K141RaAaaGa1111B.1.5960.000959
ORF1ab/nsp16141K141RaAaaGa1010B.1.214.30.071429
ORF1ab/nsp16141K141RaAaaGa1010B.1.2790.005136
ORF1ab/nsp16141K141NaaAaaT99B.1.5170.003843
ORF1ab/nsp16141K141KaaAaaG88P.10.000126
ORF1ab/nsp16141K141IaAaaTa77All0.000001
ORF1ab/nsp16141K141RaAaaGa77AY.1000.000322
ORF1ab/nsp16141K141del1Aaa-aa46All0.000001
ORF1ab/nsp16141K141del1aaAaa-26All0
ORF1ab/nsp16141K141KaaAaaG66AY.140.000528
ORF1ab/nsp16141K141NaaAaaC66AY.99.20.000553
ORF1ab/nsp16141K141KaaAaaG66B.10.000055
ORF1ab/nsp16141K141NaaAaaT46B.1.617.20.000015
ORF1ab/nsp16141K141NaaAaaC26B.1.617.20.000008
ORF1ab/nsp16141K141delAAA---55AY.40.000008
ORF1ab/nsp16141K141RaAaaGa55B.1.5950.001305
ORF1ab/nsp16141K141KaaAaaG44AY.1160.001147
ORF1ab/nsp16141K141RaAaaGa44AY.40.000006
ORF1ab/nsp16141K141delAAA---44AY.4.50.00043
ORF1ab/nsp16141K141EAaaGaa44AY.440.000024
ORF1ab/nsp16141K141RaAaaGa44AY.46.60.000289
ORF1ab/nsp16141K141RaAaaGa44B.1.10.000073
ORF1ab/nsp16141K141TaAaaCa44B.1.5130.055556
ORF1ab/nsp16141K141RaAaaGa44B.1.617.20.000015
ORF1ab/nsp16141K141XAaaTaa33All0.000001
ORF1ab/nsp16141K141QAaaCaa33AY.1030.000019
ORF1ab/nsp16141K141RaAaaGa33AY.1030.000019
ORF1ab/nsp16141K141KaaAaaG33AY.1130.000427
ORF1ab/nsp16141K141RaAaaGa33AY.290.000047
ORF1ab/nsp16141K141NaaAaaC33AY.9.20.00011
ORF1ab/nsp16141K141del1aaAaa-23B.10.000018
ORF1ab/nsp16141K141del1Aaa-aa13B.10.000009
ORF1ab/nsp16141K141RaAaaGa33B.1.1.5190.000119
ORF1ab/nsp16141K141TaAaaCa33B.1.1.70.000003
ORF1ab/nsp16141K141RaAaaGa33B.1.3300.085714
ORF1ab/nsp16141K141TaAaaCa33B.1.5250.000339
ORF1ab/nsp16141K141RaAaaGa33B.1.780.025641
ORF1ab/nsp16141K141delAAA---33P.1.150.000697
ORF1ab/nsp16141K141GAAAGGT220.111111
ORF1ab/nsp16141K141delAAA---220.111111
ORF1ab/nsp16141K141GAAAGGT22All0
ORF1ab/nsp16141K141NaaAaaT12AY.1020.000027
ORF1ab/nsp16141K141NaaAaaC12AY.1020.000027
ORF1ab/nsp16141K141EAaaGaa22AY.250.000012
ORF1ab/nsp16141K141NaaAaaT22AY.250.000012
ORF1ab/nsp16141K141NaaAaaC22AY.260.000057
ORF1ab/nsp16141K141QAaaCaa22AY.330.000134
ORF1ab/nsp16141K141KaaAaaG22AY.4.2.10.000298
ORF1ab/nsp16141K141KaaAaaG22AY.440.000012
ORF1ab/nsp16141K141NaaAaaC12AY.460.000104
ORF1ab/nsp16141K141NaaAaaT12AY.460.000104
ORF1ab/nsp16141K141KaaAaaG22AY.9.20.000073
ORF1ab/nsp16141K141RaAaaGa22AY.920.000575
ORF1ab/nsp16141K141TaAaaCa22B.1.10.000036
ORF1ab/nsp16141K141NaaAaaT22B.1.10.000036
ORF1ab/nsp16141K141KaaAaaG22B.1.1.2140.000111
ORF1ab/nsp16141K141EAaaGaa22B.1.1.70.000002
ORF1ab/nsp16141K141NaaAaaC22B.1.177.200.003035
ORF1ab/nsp16141K141RaAaaGa22B.1.3690.00057
ORF1ab/nsp16141K141KaaAaaG22B.1.5090.001732
ORF1ab/nsp16141K141delAAA---22B.1.617.20.000008
ORF1ab/nsp16141K141KaaAaaG22B.1.6370.000146
ORF1ab/nsp16141K141KaaAaaG22B.400.000729
ORF1ab/nsp16141K141IaAaaTa22B.60.00182
ORF1ab/nsp16141K141KaaAaaG22C.370.000232
ORF1ab/nsp16141K141RaAaaGa22P.10.000032
ORF1ab/nsp16141K141KaaAaaG11A0.000387
ORF1ab/nsp16141K141IaAaaTa11AY.1030.000006
ORF1ab/nsp16141K141delAAA---11AY.1030.000006
ORF1ab/nsp16141K141EAaaGaa11AY.1110.000183
ORF1ab/nsp16141K141NaaAaaC11AY.1160.000287
ORF1ab/nsp16141K141NaaAaaT11AY.1180.000063
ORF1ab/nsp16141K141delAAA---11AY.1200.000037
ORF1ab/nsp16141K141delAAA---11AY.120.10.000321
ORF1ab/nsp16141K141del1Aaa-aa11AY.120.10.000321
ORF1ab/nsp16141K141QAaaCaa11AY.230.00007
ORF1ab/nsp16141K141RaAaaGa11AY.250.000006
ORF1ab/nsp16141K141RaAaaGa11AY.270.000065
ORF1ab/nsp16141K141IaAaaTa11AY.30.00001
ORF1ab/nsp16141K141delAAA---11AY.330.000067
ORF1ab/nsp16141K141EAaaGaa11AY.39.10.00004
ORF1ab/nsp16141K141NaaAaaT11AY.40.000002
ORF1ab/nsp16141K141KaaAaaG11AY.40.000002
ORF1ab/nsp16141K141EAaaGaa11AY.40.000002
ORF1ab/nsp16141K141RaAaaGa11AY.420.00004
ORF1ab/nsp16141K141QAaaCaa11AY.420.00004
ORF1ab/nsp16141K141TaAaaCa11AY.430.000004
ORF1ab/nsp16141K141IaAaaTa11AY.430.000004
ORF1ab/nsp16141K141KaaAaaG11AY.430.000004
ORF1ab/nsp16141K141delAAA---11AY.430.000004
ORF1ab/nsp16141K141RaAaaGa11AY.440.000006
ORF1ab/nsp16141K141TaAaaCa11AY.440.000006
ORF1ab/nsp16141K141KaaAaaG11AY.460.000104
ORF1ab/nsp16141K141NaaAaaT11AY.50.000021
ORF1ab/nsp16141K141KaaAaaG11AY.530.000288
ORF1ab/nsp16141K141RaAaaGa11AY.650.000533
ORF1ab/nsp16141K141EAaaGaa11AY.670.000464
ORF1ab/nsp16141K141QAaaCaa11AY.680.000274
ORF1ab/nsp16141K141EAaaGaa11AY.690.000187
ORF1ab/nsp16141K141IaAaaTa11AY.740.000116
ORF1ab/nsp16141K141EAaaGaa11AY.90.000068
ORF1ab/nsp16141K141RaAaaGa11AY.90.000068
ORF1ab/nsp16141K141delAAA---11AY.9.20.000037
ORF1ab/nsp16141K141RaAaaGa11AY.9.20.000037
ORF1ab/nsp16141K141TaAaaCa11AY.940.000443
ORF1ab/nsp16141K141EAaaGaa11AY.980.000079
ORF1ab/nsp16141K141KaaAaaG11B0.000128
ORF1ab/nsp16141K141NaaAaaC11B.10.000009
ORF1ab/nsp16141K141TaAaaCa11B.10.000009
ORF1ab/nsp16141K141EAaaGaa11B.10.000009
ORF1ab/nsp16141K141IaAaaTa11B.10.000009
ORF1ab/nsp16141K141EAaaGaa11B.1.10.000018
ORF1ab/nsp16141K141XAaaTaa11B.1.1.280.000311
ORF1ab/nsp16141K141KaaAaaG11B.1.1.300.076923
ORF1ab/nsp16141K141NaaAaaT11B.1.1.3060.000438
ORF1ab/nsp16141K141delAAA---11B.1.1.3110.000358
ORF1ab/nsp16141K141KaaAaaG11B.1.1.3430.020833
ORF1ab/nsp16141K141RaAaaGa11B.1.1.3700.012658
ORF1ab/nsp16141K141KaaAaaG11B.1.1.4090.002833
ORF1ab/nsp16141K141RaAaaGa11B.1.1.4870.005587
ORF1ab/nsp16141K141del1Aaa-aa11B.1.1.5190.00004
ORF1ab/nsp16141K141KaaAaaG11B.1.1.5190.00004
ORF1ab/nsp16141K141XAaaTaa11B.1.1.70.000001
ORF1ab/nsp16141K141delAAA---11B.1.1.700.000341
ORF1ab/nsp16141K141QAaaCaa11B.1.1600.000031
ORF1ab/nsp16141K141EAaaGaa11B.1.1600.000031
ORF1ab/nsp16141K141NaaAaaC11B.1.1620.005025
ORF1ab/nsp16141K141RaAaaGa11B.1.1700.00431
ORF1ab/nsp16141K141delAAA---11B.1.1770.000013
ORF1ab/nsp16141K141KaaAaaG11B.1.1770.000013
ORF1ab/nsp16141K141RaAaaGa11B.1.1770.000013
ORF1ab/nsp16141K141NaaAaaC11B.1.177.170.000821
ORF1ab/nsp16141K141EAaaGaa11B.1.177.170.000821
ORF1ab/nsp16141K141RaAaaGa11B.1.177.200.001517
ORF1ab/nsp16141K141delAAA---11B.1.177.40.000211
ORF1ab/nsp16141K141delAAA---11B.1.177.540.000606
ORF1ab/nsp16141K141NaaAaaC11B.1.177.600.000218
ORF1ab/nsp16141K141TaAaaCa11B.1.177.600.000218
ORF1ab/nsp16141K141RaAaaGa11B.1.177.600.000218
ORF1ab/nsp16141K141delAAA---11B.1.177.620.001192
ORF1ab/nsp16141K141delAAA---11B.1.177.70.000165
ORF1ab/nsp16141K141KaaAaaG11B.1.177.730.000566
ORF1ab/nsp16141K141EAaaGaa11B.1.177.90.001332
ORF1ab/nsp16141K141delAAA---11B.1.177.90.001332
ORF1ab/nsp16141K141NaaAaaT11B.1.20.000009
ORF1ab/nsp16141K141RaAaaGa11B.1.2060.000816
ORF1ab/nsp16141K141RaAaaGa11B.1.2430.00007
ORF1ab/nsp16141K141RaAaaGa11B.1.2580.000067
ORF1ab/nsp16141K141delAAA---11B.1.2580.000067
ORF1ab/nsp16141K141QAaaCaa11B.1.3560.001727
ORF1ab/nsp16141K141delAAA---11B.1.360.000146
ORF1ab/nsp16141K141KaaAaaG11B.1.360.000146
ORF1ab/nsp16141K141QAaaCaa11B.1.36.10.00114
ORF1ab/nsp16141K141KaaAaaG11B.1.36.290.000517
ORF1ab/nsp16141K141RaAaaGa11B.1.36.350.002604
ORF1ab/nsp16141K141KaaAaaG11B.1.4270.00005
ORF1ab/nsp16141K141QAaaCaa11B.1.4290.000024
ORF1ab/nsp16141K141RaAaaGa11B.1.5240.001406
ORF1ab/nsp16141K141TaAaaCa11B.1.5240.001406
ORF1ab/nsp16141K141delAAA---11B.1.5250.000113
ORF1ab/nsp16141K141XAaaTaa11B.1.5460.003704
ORF1ab/nsp16141K141RaAaaGa11B.1.5800.004065
ORF1ab/nsp16141K141RaAaaGa11B.1.6120.002653
ORF1ab/nsp16141K141TaAaaCa11B.1.617.20.000004
ORF1ab/nsp16141K141KaaAaaG11B.1.617.20.000004
ORF1ab/nsp16141K141QAaaCaa11B.1.617.20.000004
ORF1ab/nsp16141K141delAAA---11B.1.6200.000946
ORF1ab/nsp16141K141delAAA---11B.1.6210.000089
ORF1ab/nsp16141K141del1Aaa-aa11B.1.6360.006711
ORF1ab/nsp16141K141RaAaaGa11B.1.88.10.004808
ORF1ab/nsp16141K141TaAaaCa11B.1.910.002075
ORF1ab/nsp16141K141delAAA---11B.340.013699
ORF1ab/nsp16141K141KaaAaaG11C.110.010638
ORF1ab/nsp16141K141KaaAaaG11C.37.10.002618
ORF1ab/nsp16141K141NaaAaaC11D.20.000075
ORF1ab/nsp16141K141KaaAaaG11D.30.005917
ORF1ab/nsp16141K141NaaAaaC11P.10.000016
ORF1ab/nsp16141K141KaaAaaG11P.1.100.000269
ORF1ab/nsp16141K141KaaAaaG11P.1.40.000977
ORF1ab/nsp16141K141QAaaCaa11Q.10.000126
ORF1ab/nsp16141K141RaAaaGa11Q.20.000613
ORF1ab/nsp16141K141delAAA---11U.30.003861