CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 140 & Codon = Gca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16140T140AT6938AnonsynAcaGca150150121076-21078

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16140T140AAcaGca150150All0.000029
ORF1ab/nsp16140T140AAcaGca3535B.1.20.000308
ORF1ab/nsp16140T140AAcaGca3131AY.40.000048
ORF1ab/nsp16140T140AAcaGca2525C.36.30.01418
ORF1ab/nsp16140T140AAcaGca88B.1.10.000145
ORF1ab/nsp16140T140AAcaGca66AY.1190.000212
ORF1ab/nsp16140T140AAcaGca66AY.390.000148
ORF1ab/nsp16140T140AAcaGca66AY.440.000037
ORF1ab/nsp16140T140AAcaGca55AY.250.00003
ORF1ab/nsp16140T140AAcaGca33B.1.5260.000071
ORF1ab/nsp16140T140AAcaGca22B.10.000018
ORF1ab/nsp16140T140AAcaGca22B.1.1.10.000653
ORF1ab/nsp16140T140AAcaGca22B.1.1.70.000002
ORF1ab/nsp16140T140AAcaGca22B.1.617.20.000008
ORF1ab/nsp16140T140AAcaGca22P.10.000032
ORF1ab/nsp16140T140AAcaGca22P.1.10.000635
ORF1ab/nsp16140T140AAcaGca11A.2.40.003367
ORF1ab/nsp16140T140AAcaGca11AY.1020.000027
ORF1ab/nsp16140T140AAcaGca11AY.1030.000006
ORF1ab/nsp16140T140AAcaGca11AY.230.00007
ORF1ab/nsp16140T140AAcaGca11AY.23.10.000417
ORF1ab/nsp16140T140AAcaGca11AY.430.000004
ORF1ab/nsp16140T140AAcaGca11AY.450.000122
ORF1ab/nsp16140T140AAcaGca11AY.750.000056
ORF1ab/nsp16140T140AAcaGca11AY.840.000437
ORF1ab/nsp16140T140AAcaGca11B.1.1.1410.002012
ORF1ab/nsp16140T140AAcaGca11B.1.177.40.000211
ORF1ab/nsp16140T140AAcaGca11B.1.177.80.000752
ORF1ab/nsp16140T140AAcaGca11B.1.2210.000071

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.