CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 133 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16133D133DD6931DsyngaCgaT1455314553121055-21057

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16133D133DgaCgaT1455314553All0.002783
ORF1ab/nsp16133D133DgaCgaT28452845B.1.617.20.010713
ORF1ab/nsp16133D133DgaCgaT28012801B.1.6280.986963
ORF1ab/nsp16133D133DgaCgaT12141214B.1.5770.834364
ORF1ab/nsp16133D133DgaCgaT802802AY.1020.021264
ORF1ab/nsp16133D133DgaCgaT733733B.1.1.70.000656
ORF1ab/nsp16133D133DgaCgaT676676AY.7.20.378076
ORF1ab/nsp16133D133DgaCgaT598598AY.40.000931
ORF1ab/nsp16133D133DgaCgaT544544AY.250.003272
ORF1ab/nsp16133D133DgaCgaT437437AY.30.004347
ORF1ab/nsp16133D133DgaCgaT255255AY.440.001552
ORF1ab/nsp16133D133DgaCgaT218218B.10.001997
ORF1ab/nsp16133D133DgaCgaT176176AY.430.00078
ORF1ab/nsp16133D133DgaCgaT154154AY.60.006334
ORF1ab/nsp16133D133DgaCgaT150150AY.390.003707
ORF1ab/nsp16133D133DgaCgaT149149B.1.20.001312
ORF1ab/nsp16133D133DgaCgaT141141AY.1030.000875
ORF1ab/nsp16133D133DgaCgaT140140B.1.2430.009742
ORF1ab/nsp16133D133DgaCgaT137137AY.90.009261
ORF1ab/nsp16133D133DgaCgaT109109C.380.879032
ORF1ab/nsp16133D133DgaCgaT100100P.1.150.023234
ORF1ab/nsp16133D133DgaCgaT9696B.1.1.3560.820513
ORF1ab/nsp16133D133DgaCgaT7777B.1.1600.002401
ORF1ab/nsp16133D133DgaCgaT7777B.1.4290.001812
ORF1ab/nsp16133D133DgaCgaT7676AY.1190.002683
ORF1ab/nsp16133D133DgaCgaT7474AY.50.001528
ORF1ab/nsp16133D133DgaCgaT6363B.1.1.5190.002502
ORF1ab/nsp16133D133DgaCgaT6161AY.34.10.031107
ORF1ab/nsp16133D133DgaCgaT5858P.10.000914
ORF1ab/nsp16133D133DgaCgaT5151AY.1170.00431
ORF1ab/nsp16133D133DgaCgaT5050AY.1200.001859
ORF1ab/nsp16133D133DgaCgaT4646AY.46.60.003322
ORF1ab/nsp16133D133DgaCgaT4444AY.230.003069
ORF1ab/nsp16133D133DgaCgaT4343B.1.10.00078
ORF1ab/nsp16133D133DgaCgaT4040C.2.10.266667
ORF1ab/nsp16133D133DgaCgaT3939B.1.1.3251
ORF1ab/nsp16133D133DgaCgaT3636B.1.5260.000846
ORF1ab/nsp16133D133DgaCgaT3333B.1.5950.008612
ORF1ab/nsp16133D133DgaCgaT3232B.1.1770.000421
ORF1ab/nsp16133D133DgaCgaT3030AY.260.000849
ORF1ab/nsp16133D133DgaCgaT2929C.36.30.016449
ORF1ab/nsp16133D133DgaCgaT2828B.1.2210.001989
ORF1ab/nsp16133D133DgaCgaT2727AY.330.001803
ORF1ab/nsp16133D133DgaCgaT2727B.1.5960.002353
ORF1ab/nsp16133D133DgaCgaT2525AY.200.000972
ORF1ab/nsp16133D133DgaCgaT2525B.1.3510.000743
ORF1ab/nsp16133D133DgaCgaT2424AY.460.002498
ORF1ab/nsp16133D133DgaCgaT2424AY.750.001345
ORF1ab/nsp16133D133DgaCgaT2323AY.290.000363
ORF1ab/nsp16133D133DgaCgaT2020AY.690.003733
ORF1ab/nsp16133D133DgaCgaT2020B.1.438.10.002145
ORF1ab/nsp16133D133DgaCgaT1919AY.4.20.000412
ORF1ab/nsp16133D133DgaCgaT1919AY.540.001812
ORF1ab/nsp16133D133DgaCgaT1818AY.450.00219
ORF1ab/nsp16133D133DgaCgaT1717AY.4.2.10.002533
ORF1ab/nsp16133D133DgaCgaT1616AY.1000.000736
ORF1ab/nsp16133D133DgaCgaT1616B.1.360.002334
ORF1ab/nsp16133D133DgaCgaT1515AY.270.000971
ORF1ab/nsp16133D133DgaCgaT1515AY.770.016911
ORF1ab/nsp16133D133DgaCgaT1515B.1.6270.030303
ORF1ab/nsp16133D133DgaCgaT1414AY.1160.004015
ORF1ab/nsp16133D133DgaCgaT1414AY.340.001358
ORF1ab/nsp16133D133DgaCgaT1313AY.3.10.001108
ORF1ab/nsp16133D133DgaCgaT1313AY.46.40.002139
ORF1ab/nsp16133D133DgaCgaT1313AY.980.001027
ORF1ab/nsp16133D133DgaCgaT1212AY.420.000483
ORF1ab/nsp16133D133DgaCgaT1212P.1.120.005808
ORF1ab/nsp16133D133DgaCgaT1111AY.1110.002015
ORF1ab/nsp16133D133DgaCgaT1111AY.1130.001566
ORF1ab/nsp16133D133DgaCgaT1111B.1.2340.001451
ORF1ab/nsp16133D133DgaCgaT1010AY.9.20.000367
ORF1ab/nsp16133D133DgaCgaT1010B.1.3110.002746
ORF1ab/nsp16133D133DgaCgaT99B.1.2580.000599
ORF1ab/nsp16133D133DgaCgaT99B.1.4690.032491
ORF1ab/nsp16133D133DgaCgaT99C.370.001045
ORF1ab/nsp16133D133DgaCgaT99D.20.000675
ORF1ab/nsp16133D133DgaCgaT88AY.120.10.002568
ORF1ab/nsp16133D133DgaCgaT88AY.1210.001083
ORF1ab/nsp16133D133DgaCgaT88AY.75.10.001442
ORF1ab/nsp16133D133DgaCgaT88B.1.1.2160.007124
ORF1ab/nsp16133D133DgaCgaT88B.1.4270.000404
ORF1ab/nsp16133D133DgaCgaT77AY.360.001037
ORF1ab/nsp16133D133DgaCgaT77AY.840.003062
ORF1ab/nsp16133D133DgaCgaT77B.1.36.290.003621
ORF1ab/nsp16133D133DgaCgaT77B.1.4020.068627
ORF1ab/nsp16133D133DgaCgaT77B.1.5610.002779
ORF1ab/nsp16133D133DgaCgaT77Q.10.000884
ORF1ab/nsp16133D133DgaCgaT77R.10.00063
ORF1ab/nsp16133D133DgaCgaT66A.23.10.004225
ORF1ab/nsp16133D133DgaCgaT66AY.4.50.000645
ORF1ab/nsp16133D133DgaCgaT66AY.610.000629
ORF1ab/nsp16133D133DgaCgaT66AY.930.001638
ORF1ab/nsp16133D133DgaCgaT66B.1.1.3180.001811
ORF1ab/nsp16133D133DgaCgaT66B.1.1.5280.028846
ORF1ab/nsp16133D133DgaCgaT66B.1.1790.022556
ORF1ab/nsp16133D133DgaCgaT66B.1.5030.014925
ORF1ab/nsp16133D133DgaCgaT66P.1.140.000287
ORF1ab/nsp16133D133DgaCgaT55AY.1050.003215
ORF1ab/nsp16133D133DgaCgaT55AY.1080.005513
ORF1ab/nsp16133D133DgaCgaT55AY.1180.000313
ORF1ab/nsp16133D133DgaCgaT55AY.130.000805
ORF1ab/nsp16133D133DgaCgaT55AY.140.00044
ORF1ab/nsp16133D133DgaCgaT55AY.470.000156
ORF1ab/nsp16133D133DgaCgaT55AY.5.30.001687
ORF1ab/nsp16133D133DgaCgaT55AY.530.001438
ORF1ab/nsp16133D133DgaCgaT55AY.740.000578
ORF1ab/nsp16133D133DgaCgaT55AY.98.10.000242
ORF1ab/nsp16133D133DgaCgaT55AY.99.20.000461
ORF1ab/nsp16133D133DgaCgaT55B0.000639
ORF1ab/nsp16133D133DgaCgaT55B.1.1470.003779
ORF1ab/nsp16133D133DgaCgaT55B.1.177.860.000917
ORF1ab/nsp16133D133DgaCgaT55B.1.2400.001078
ORF1ab/nsp16133D133DgaCgaT55B.1.258.170.00052
ORF1ab/nsp16133D133DgaCgaT55B.1.2840.065789
ORF1ab/nsp16133D133DgaCgaT55B.1.4700.007022
ORF1ab/nsp16133D133DgaCgaT55B.1.6030.053191
ORF1ab/nsp16133D133DgaCgaT44AD.20.000876
ORF1ab/nsp16133D133DgaCgaT44AY.1140.000924
ORF1ab/nsp16133D133DgaCgaT44AY.4.30.003367
ORF1ab/nsp16133D133DgaCgaT44AY.680.001095
ORF1ab/nsp16133D133DgaCgaT44AY.710.0019
ORF1ab/nsp16133D133DgaCgaT44AY.790.004843
ORF1ab/nsp16133D133DgaCgaT44AY.880.003537
ORF1ab/nsp16133D133DgaCgaT44B.1.1.2940.005063
ORF1ab/nsp16133D133DgaCgaT44B.1.1.3060.001754
ORF1ab/nsp16133D133DgaCgaT44B.1.160.260.009685
ORF1ab/nsp16133D133DgaCgaT44B.1.4660.093023
ORF1ab/nsp16133D133DgaCgaT44B.1.4930.102564
ORF1ab/nsp16133D133DgaCgaT44B.1.6370.000292
ORF1ab/nsp16133D133DgaCgaT44P.1.70.001277
ORF1ab/nsp16133D133DgaCgaT44P.20.000747
ORF1ab/nsp16133D133DgaCgaT44Q.80.00066
ORF1ab/nsp16133D133DgaCgaT33AY.10.001187
ORF1ab/nsp16133D133DgaCgaT33AY.1100.000338
ORF1ab/nsp16133D133DgaCgaT33AY.370.000948
ORF1ab/nsp16133D133DgaCgaT33AY.39.10.000119
ORF1ab/nsp16133D133DgaCgaT33AY.410.000882
ORF1ab/nsp16133D133DgaCgaT33AY.46.20.001906
ORF1ab/nsp16133D133DgaCgaT33AY.5.40.00083
ORF1ab/nsp16133D133DgaCgaT33AY.580.002722
ORF1ab/nsp16133D133DgaCgaT33AY.670.001393
ORF1ab/nsp16133D133DgaCgaT33AY.870.002498
ORF1ab/nsp16133D133DgaCgaT33AY.960.006224
ORF1ab/nsp16133D133DgaCgaT33B.1.1.1170.029126
ORF1ab/nsp16133D133DgaCgaT33B.1.1.2630.004673
ORF1ab/nsp16133D133DgaCgaT33B.1.1260.003827
ORF1ab/nsp16133D133DgaCgaT33B.1.177.210.000229
ORF1ab/nsp16133D133DgaCgaT33B.1.177.810.000568
ORF1ab/nsp16133D133DgaCgaT33B.1.2060.002447
ORF1ab/nsp16133D133DgaCgaT33B.1.36.180.001261
ORF1ab/nsp16133D133DgaCgaT33B.1.36.80.003
ORF1ab/nsp16133D133DgaCgaT33B.1.3750.002459
ORF1ab/nsp16133D133DgaCgaT33B.1.3960.002117
ORF1ab/nsp16133D133DgaCgaT33B.1.5170.001281
ORF1ab/nsp16133D133DgaCgaT33B.1.5250.000339
ORF1ab/nsp16133D133DgaCgaT33B.1.6210.000266
ORF1ab/nsp16133D133DgaCgaT33B.1.621.10.001517
ORF1ab/nsp16133D133DgaCgaT33B.400.001093
ORF1ab/nsp16133D133DgaCgaT22A.2.50.000998
ORF1ab/nsp16133D133DgaCgaT22AY.1060.00067
ORF1ab/nsp16133D133DgaCgaT22AY.116.10.000623
ORF1ab/nsp16133D133DgaCgaT22AY.150.004444
ORF1ab/nsp16133D133DgaCgaT22AY.300.000791
ORF1ab/nsp16133D133DgaCgaT22AY.46.10.002053
ORF1ab/nsp16133D133DgaCgaT22AY.500.001599
ORF1ab/nsp16133D133DgaCgaT22AY.590.001059
ORF1ab/nsp16133D133DgaCgaT22AY.650.001066
ORF1ab/nsp16133D133DgaCgaT22AY.700.000417
ORF1ab/nsp16133D133DgaCgaT22AY.780.003082
ORF1ab/nsp16133D133DgaCgaT22AY.830.003448
ORF1ab/nsp16133D133DgaCgaT22AY.9.10.000167
ORF1ab/nsp16133D133DgaCgaT22AY.920.000575
ORF1ab/nsp16133D133DgaCgaT22AZ.20.001642
ORF1ab/nsp16133D133DgaCgaT22B.1.1.10.000653
ORF1ab/nsp16133D133DgaCgaT22B.1.1.1760.000879
ORF1ab/nsp16133D133DgaCgaT22B.1.1.2220.000408
ORF1ab/nsp16133D133DgaCgaT22B.1.1.2410.004141
ORF1ab/nsp16133D133DgaCgaT22B.1.1.3110.000716
ORF1ab/nsp16133D133DgaCgaT22B.1.1.3150.016949
ORF1ab/nsp16133D133DgaCgaT22B.1.1.3160.00185
ORF1ab/nsp16133D133DgaCgaT22B.1.1.330.000842
ORF1ab/nsp16133D133DgaCgaT22B.1.1.3690.000892
ORF1ab/nsp16133D133DgaCgaT22B.1.1.3980.006452
ORF1ab/nsp16133D133DgaCgaT22B.1.1.4480.004065
ORF1ab/nsp16133D133DgaCgaT22B.1.177.580.002663
ORF1ab/nsp16133D133DgaCgaT22B.1.177.600.000437
ORF1ab/nsp16133D133DgaCgaT22B.1.177.820.000955
ORF1ab/nsp16133D133DgaCgaT22B.1.36.310.003503
ORF1ab/nsp16133D133DgaCgaT22C.140.008658
ORF1ab/nsp16133D133DgaCgaT22N.90.011905
ORF1ab/nsp16133D133DgaCgaT11A0.000387
ORF1ab/nsp16133D133DgaCgaT11A.2.5.30.010309
ORF1ab/nsp16133D133DgaCgaT11AY.1010.00049
ORF1ab/nsp16133D133DgaCgaT11AY.120.000316
ORF1ab/nsp16133D133DgaCgaT11AY.16.10.00047
ORF1ab/nsp16133D133DgaCgaT11AY.190.00114
ORF1ab/nsp16133D133DgaCgaT11AY.20.000356
ORF1ab/nsp16133D133DgaCgaT11AY.210.001898
ORF1ab/nsp16133D133DgaCgaT11AY.23.10.000417
ORF1ab/nsp16133D133DgaCgaT11AY.240.000431
ORF1ab/nsp16133D133DgaCgaT11AY.280.00189
ORF1ab/nsp16133D133DgaCgaT11AY.320.000532
ORF1ab/nsp16133D133DgaCgaT11AY.350.000233
ORF1ab/nsp16133D133DgaCgaT11AY.380.000499
ORF1ab/nsp16133D133DgaCgaT11AY.400.000964
ORF1ab/nsp16133D133DgaCgaT11AY.480.000465
ORF1ab/nsp16133D133DgaCgaT11AY.550.000917
ORF1ab/nsp16133D133DgaCgaT11AY.570.000656
ORF1ab/nsp16133D133DgaCgaT11AY.630.000387
ORF1ab/nsp16133D133DgaCgaT11AY.640.000595
ORF1ab/nsp16133D133DgaCgaT11AY.7.10.000113
ORF1ab/nsp16133D133DgaCgaT11AY.890.004902
ORF1ab/nsp16133D133DgaCgaT11AY.910.00073
ORF1ab/nsp16133D133DgaCgaT11AY.950.000761
ORF1ab/nsp16133D133DgaCgaT11AY.990.001049
ORF1ab/nsp16133D133DgaCgaT11B.1.1.100.001115
ORF1ab/nsp16133D133DgaCgaT11B.1.1.120.007463
ORF1ab/nsp16133D133DgaCgaT11B.1.1.1570.000913
ORF1ab/nsp16133D133DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp16133D133DgaCgaT11B.1.1.1920.002309
ORF1ab/nsp16133D133DgaCgaT11B.1.1.2050.003717
ORF1ab/nsp16133D133DgaCgaT11B.1.1.2280.003049
ORF1ab/nsp16133D133DgaCgaT11B.1.1.250.000569
ORF1ab/nsp16133D133DgaCgaT11B.1.1.2580.003257
ORF1ab/nsp16133D133DgaCgaT11B.1.1.280.000311
ORF1ab/nsp16133D133DgaCgaT11B.1.1.3030.002762
ORF1ab/nsp16133D133DgaCgaT11B.1.1.3040.002809
ORF1ab/nsp16133D133DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp16133D133DgaCgaT11B.1.1.3260.001761
ORF1ab/nsp16133D133DgaCgaT11B.1.1.3640.066667
ORF1ab/nsp16133D133DgaCgaT11B.1.1.3780.007299
ORF1ab/nsp16133D133DgaCgaT11B.1.1.4130.006897
ORF1ab/nsp16133D133DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp16133D133DgaCgaT11B.1.1.500.000679
ORF1ab/nsp16133D133DgaCgaT11B.1.1.5070.008696
ORF1ab/nsp16133D133DgaCgaT11B.1.1.580.005376
ORF1ab/nsp16133D133DgaCgaT11B.1.1.630.000386
ORF1ab/nsp16133D133DgaCgaT11B.1.1.700.000341
ORF1ab/nsp16133D133DgaCgaT11B.1.1110.001175
ORF1ab/nsp16133D133DgaCgaT11B.1.1570.002985
ORF1ab/nsp16133D133DgaCgaT11B.1.160.110.005714
ORF1ab/nsp16133D133DgaCgaT11B.1.160.200.008929
ORF1ab/nsp16133D133DgaCgaT11B.1.177.440.000519
ORF1ab/nsp16133D133DgaCgaT11B.1.177.460.000918
ORF1ab/nsp16133D133DgaCgaT11B.1.177.60.000977
ORF1ab/nsp16133D133DgaCgaT11B.1.177.620.001192
ORF1ab/nsp16133D133DgaCgaT11B.1.177.70.000165
ORF1ab/nsp16133D133DgaCgaT11B.1.177.730.000566
ORF1ab/nsp16133D133DgaCgaT11B.1.177.800.001912
ORF1ab/nsp16133D133DgaCgaT11B.1.177.870.000728
ORF1ab/nsp16133D133DgaCgaT11B.1.1890.004292
ORF1ab/nsp16133D133DgaCgaT11B.1.2320.000537
ORF1ab/nsp16133D133DgaCgaT11B.1.2370.004975
ORF1ab/nsp16133D133DgaCgaT11B.1.2470.014925
ORF1ab/nsp16133D133DgaCgaT11B.1.2790.000514
ORF1ab/nsp16133D133DgaCgaT11B.1.3010.005917
ORF1ab/nsp16133D133DgaCgaT11B.1.3200.001245
ORF1ab/nsp16133D133DgaCgaT11B.1.3490.000715
ORF1ab/nsp16133D133DgaCgaT11B.1.36.100.004785
ORF1ab/nsp16133D133DgaCgaT11B.1.3770.004566
ORF1ab/nsp16133D133DgaCgaT11B.1.3780.006849
ORF1ab/nsp16133D133DgaCgaT11B.1.3820.008929
ORF1ab/nsp16133D133DgaCgaT11B.1.3980.002976
ORF1ab/nsp16133D133DgaCgaT11B.1.4030.003268
ORF1ab/nsp16133D133DgaCgaT11B.1.4080.00369
ORF1ab/nsp16133D133DgaCgaT11B.1.4160.001269
ORF1ab/nsp16133D133DgaCgaT11B.1.4330.003195
ORF1ab/nsp16133D133DgaCgaT11B.1.4360.001029
ORF1ab/nsp16133D133DgaCgaT11B.1.4430.004673
ORF1ab/nsp16133D133DgaCgaT11B.1.4710.002732
ORF1ab/nsp16133D133DgaCgaT11B.1.5600.00463
ORF1ab/nsp16133D133DgaCgaT11B.1.5640.000426
ORF1ab/nsp16133D133DgaCgaT11B.1.5650.00081
ORF1ab/nsp16133D133DgaCgaT11B.1.5670.003333
ORF1ab/nsp16133D133DgaCgaT11B.1.5760.000907
ORF1ab/nsp16133D133DgaCgaT11B.1.5800.004065
ORF1ab/nsp16133D133DgaCgaT11B.1.5820.000491
ORF1ab/nsp16133D133DgaCgaT11B.1.6090.000479
ORF1ab/nsp16133D133DgaCgaT11B.1.617.10.000129
ORF1ab/nsp16133D133DgaCgaT11B.1.6340.003425
ORF1ab/nsp16133D133DgaCgaT11B.1.780.008547
ORF1ab/nsp16133D133DgaCgaT11B.30.000831
ORF1ab/nsp16133D133DgaCgaT11C.1.20.004255
ORF1ab/nsp16133D133DgaCgaT11C.160.00106
ORF1ab/nsp16133D133DgaCgaT11C.36.3.10.002717
ORF1ab/nsp16133D133DgaCgaT11N.30.005814
ORF1ab/nsp16133D133DgaCgaT11N.50.001767
ORF1ab/nsp16133D133DgaCgaT11P.1.100.000269
ORF1ab/nsp16133D133DgaCgaT11P.1.160.000374
ORF1ab/nsp16133D133DgaCgaT11P.1.170.000162
ORF1ab/nsp16133D133DgaCgaT11Q.20.000613
ORF1ab/nsp16133D133DgaCgaT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.