CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 133 | D133D | D6931D | syn | gaC | gaT | 14553 | 14553 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133N | D6931N | nonsyn | Gac | Aac | 2137 | 2137 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133del | D6931del | del | GAC | --- | 42 | 42 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133E | D6931E | nonsyn | gaC | gaA | 33 | 32 | 0.969697 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133E | D6931E | nonsyn | gaC | gaG | 33 | 1 | 0.030303 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133Y | D6931Y | nonsyn | Gac | Tac | 27 | 27 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133del1 | D6931del1 | del | gaC | ga- | 14 | 13 | 0.928571 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133del1 | D6931del1 | del | Gac | -ac | 14 | 1 | 0.0714286 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133G | D6931G | nonsyn | gAc | gGc | 11 | 10 | 0.909091 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133G | D6931G | nonsyn | gAC | gGA | 11 | 1 | 0.0909091 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133del2 | D6931del2 | del | gAC | g-- | 10 | 9 | 0.9 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133del2 | D6931del2 | del | GAc | --c | 10 | 1 | 0.1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133C | D6931C | nonsyn | GAc | TGc | 6 | 6 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133A | D6931A | nonsyn | gAc | gCc | 6 | 5 | 0.833333 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133A | D6931A | nonsyn | gAC | gCT | 6 | 1 | 0.166667 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133H | D6931H | nonsyn | Gac | Cac | 4 | 4 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133S | D6931S | nonsyn | GAc | AGc | 2 | 1 | 0.5 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133S | D6931S | nonsyn | GAc | TCc | 2 | 1 | 0.5 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133R | D6931R | nonsyn | GAC | CGA | 1 | 1 | 1 | 21055-21057 |
ORF1ab/nsp16 | 133 | D133V | D6931V | nonsyn | gAc | gTc | 1 | 1 | 1 | 21055-21057 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 14553 | 14553 | All | 0.002783 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2845 | 2845 | B.1.617.2 | 0.010713 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2801 | 2801 | B.1.628 | 0.986963 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2137 | 2137 | All | 0.000409 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1590 | 1590 | AY.3 | 0.015815 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1214 | 1214 | B.1.577 | 0.834364 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 802 | 802 | AY.102 | 0.021264 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 733 | 733 | B.1.1.7 | 0.000656 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 676 | 676 | AY.7.2 | 0.378076 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 598 | 598 | AY.4 | 0.000931 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 544 | 544 | AY.25 | 0.003272 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 437 | 437 | AY.3 | 0.004347 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 255 | 255 | AY.44 | 0.001552 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 218 | 218 | B.1 | 0.001997 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 183 | 183 | AY.4 | 0.000285 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 176 | 176 | AY.43 | 0.00078 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 154 | 154 | AY.6 | 0.006334 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 150 | 150 | AY.39 | 0.003707 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 149 | 149 | B.1.2 | 0.001312 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 141 | 141 | AY.103 | 0.000875 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 140 | 140 | B.1.243 | 0.009742 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 137 | 137 | AY.9 | 0.009261 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 109 | 109 | C.38 | 0.879032 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 100 | 100 | P.1.15 | 0.023234 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 96 | 96 | B.1.1.356 | 0.820513 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 77 | 77 | B.1.160 | 0.002401 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 77 | 77 | B.1.429 | 0.001812 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 76 | 76 | AY.119 | 0.002683 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 74 | 74 | AY.5 | 0.001528 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 63 | 63 | B.1.1.519 | 0.002502 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 61 | 61 | AY.34.1 | 0.031107 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 58 | 58 | P.1 | 0.000914 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 51 | 51 | AY.117 | 0.00431 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 50 | 50 | AY.120 | 0.001859 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 50 | 50 | AY.25 | 0.000301 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 46 | 46 | AY.46.6 | 0.003322 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 44 | 44 | AY.23 | 0.003069 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 43 | 43 | B.1.1 | 0.00078 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 40 | 40 | C.2.1 | 0.266667 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 39 | 39 | B.1.1.325 | 1 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 36 | 36 | B.1.526 | 0.000846 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 32 | 33 | All | 0.000006 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaG | 1 | 33 | All | 0 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 33 | 33 | B.1.595 | 0.008612 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 30 | 30 | AY.26 | 0.000849 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 29 | 29 | C.36.3 | 0.016449 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 28 | 28 | B.1.221 | 0.001989 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 27 | 27 | All | 0.000005 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 27 | 27 | AY.33 | 0.001803 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 27 | 27 | B.1.596 | 0.002353 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 25 | 25 | AY.20 | 0.000972 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 24 | 24 | AY.46 | 0.002498 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 24 | 24 | AY.75 | 0.001345 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 20 | 20 | AY.69 | 0.003733 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 20 | 20 | B.1.438.1 | 0.002145 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 19 | 19 | AY.54 | 0.001812 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 18 | 18 | AY.45 | 0.00219 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 17 | 17 | AY.4.2.1 | 0.002533 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 16 | 16 | B.1.36 | 0.002334 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 15 | 15 | AY.27 | 0.000971 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 15 | 15 | AY.77 | 0.016911 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 15 | 15 | B.1.627 | 0.030303 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 13 | 14 | All | 0.000002 |
ORF1ab/nsp16 | 133 | D133del1 | Gac | -ac | 1 | 14 | All | 0 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 14 | 14 | AY.116 | 0.004015 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 14 | 14 | AY.34 | 0.001358 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 13 | 13 | AY.3.1 | 0.001108 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 13 | 13 | AY.46.4 | 0.002139 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 13 | 13 | AY.98 | 0.001027 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 12 | 12 | P.1.12 | 0.005808 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 10 | 11 | All | 0.000002 |
ORF1ab/nsp16 | 133 | D133G | gAC | gGA | 1 | 11 | All | 0 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 11 | 11 | AY.111 | 0.002015 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 11 | 11 | AY.113 | 0.001566 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 9 | 10 | All | 0.000002 |
ORF1ab/nsp16 | 133 | D133del2 | GAc | --c | 1 | 10 | All | 0 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 9 | 10 | B.1.1.7 | 0.000008 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaG | 1 | 10 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 10 | 10 | B.1.265 | 0.012706 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 9 | 9 | B.1.469 | 0.032491 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 8 | 8 | AE.8 | 0.003912 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 8 | 8 | AY.120.1 | 0.002568 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 8 | 8 | AY.121 | 0.001083 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | B.1.402 | 0.068627 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | A.23.1 | 0.004225 |
ORF1ab/nsp16 | 133 | D133C | GAc | TGc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 133 | D133A | gAc | gCc | 5 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 133 | D133A | gAC | gCT | 1 | 6 | All | 0 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 6 | 6 | AY.120.1 | 0.001926 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | AY.93 | 0.001638 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | B.1.1.528 | 0.028846 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | B.1.179 | 0.022556 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | B.1.503 | 0.014925 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.147 | 0.003779 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.284 | 0.065789 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 5 | 5 | B.1.603 | 0.053191 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp16 | 133 | D133H | Gac | Cac | 4 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AY.4.3 | 0.003367 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AY.79 | 0.004843 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp16 | 133 | D133C | GAc | TGc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | B.1.160.26 | 0.009685 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | B.1.466 | 0.093023 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | B.1.493 | 0.102564 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 3 | 3 | B | 0.000383 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.1.117 | 0.029126 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 133 | D133G | gAC | gGA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp16 | 133 | D133S | GAc | TCc | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 133 | D133S | GAc | AGc | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp16 | 133 | D133C | GAc | TGc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.83 | 0.003448 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 133 | D133V | gAc | gTc | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 133 | D133R | GAC | CGA | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 133 | D133A | gAc | gCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 133 | D133H | Gac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 133 | D133del2 | GAc | --c | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp16 | 133 | D133R | GAC | CGA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 133 | D133H | Gac | Cac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 133 | D133A | gAc | gCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.364 | 0.066667 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp16 | 133 | D133V | gAc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 133 | D133S | GAc | AGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 133 | D133del1 | Gac | -ac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 133 | D133H | Gac | Cac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 133 | D133A | gAc | gCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp16 | 133 | D133A | gAc | gCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp16 | 133 | D133S | GAc | TCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 133 | D133A | gAc | gCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 133 | D133A | gAC | gCT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 133 | D133E | gaC | gaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 133 | D133del | GAC | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp16 | 133 | D133del1 | gaC | ga- | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp16 | 133 | D133del2 | gAC | g-- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp16 | 133 | D133G | gAc | gGc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 133 | D133H | Gac | Cac | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp16 | 133 | D133Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 133 | D133N | Gac | Aac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp16 | 133 | D133D | gaC | gaT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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