CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 118

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16118V118VV6916VsyngtAgtC11739170.78175621010-21012
ORF1ab/nsp16118V118VV6916VsyngtAgtG11732470.21057121010-21012
ORF1ab/nsp16118V118VV6916VsyngtAgtT117390.0076726321010-21012
ORF1ab/nsp16118V118LV6916LnonsynGtaTta113511340.99911921010-21012
ORF1ab/nsp16118V118LV6916LnonsynGtaCta113510.00088105721010-21012
ORF1ab/nsp16118V118IV6916InonsynGtaAta221221121010-21012
ORF1ab/nsp16118V118delV6916deldelGTA---5050121010-21012
ORF1ab/nsp16118V118FV6916FnonsynGtATtT1060.621010-21012
ORF1ab/nsp16118V118FV6916FnonsynGtATtC1040.421010-21012
ORF1ab/nsp16118V118AV6916AnonsyngTagCa99121010-21012
ORF1ab/nsp16118V118GV6916GnonsyngTagGa740.57142921010-21012
ORF1ab/nsp16118V118GV6916GnonsyngTAgGT730.42857121010-21012
ORF1ab/nsp16118V118CV6916CnonsynGTATGT33121010-21012
ORF1ab/nsp16118V118XV6916XnonsynGTaTGa33121010-21012
ORF1ab/nsp16118V118del1V6916del1delGta-ta310.33333321010-21012
ORF1ab/nsp16118V118del1V6916del1delgTag-a310.33333321010-21012
ORF1ab/nsp16118V118del1V6916del1delgtAgt-310.33333321010-21012
ORF1ab/nsp16118V118del2V6916del2delgTAg--11121010-21012

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16118V118VgtAgtC9171173All0.000175
ORF1ab/nsp16118V118VgtAgtG2471173All0.000047
ORF1ab/nsp16118V118VgtAgtT91173All0.000002
ORF1ab/nsp16118V118LGtaTta11341135All0.000217
ORF1ab/nsp16118V118LGtaCta11135All0
ORF1ab/nsp16118V118VgtAgtC9121015B.1.1.70.000816
ORF1ab/nsp16118V118VgtAgtG1031015B.1.1.70.000092
ORF1ab/nsp16118V118IGtaAta221221All0.000042
ORF1ab/nsp16118V118LGtaTta204204B.1.1.70.000183
ORF1ab/nsp16118V118LGtaTta203203AY.330.013556
ORF1ab/nsp16118V118LGtaTta102102B.1.617.20.000384
ORF1ab/nsp16118V118LGtaTta9191AY.750.005098
ORF1ab/nsp16118V118VgtAgtG5959AY.1060.019759
ORF1ab/nsp16118V118LGtaTta5353AY.40.000082
ORF1ab/nsp16118V118LGtaTta5353AY.430.000235
ORF1ab/nsp16118V118delGTA---5050All0.00001
ORF1ab/nsp16118V118IGtaAta4747B.1.5620.87037
ORF1ab/nsp16118V118LGtaTta4646B.1.20.000405
ORF1ab/nsp16118V118LGtaTta2929AY.1030.00018
ORF1ab/nsp16118V118LGtaTta2424AY.1130.003417
ORF1ab/nsp16118V118IGtaAta2020AY.440.000122
ORF1ab/nsp16118V118IGtaAta2020B.1.1.70.000018
ORF1ab/nsp16118V118IGtaAta1818AY.40.000028
ORF1ab/nsp16118V118delGTA---1717B.1.1.70.000015
ORF1ab/nsp16118V118LGtaTta1616AY.1180.001002
ORF1ab/nsp16118V118LGtaTta1616B.1.36.80.016
ORF1ab/nsp16118V118LGtaTta1616B.1.4290.000376
ORF1ab/nsp16118V118IGtaAta1515AY.430.000066
ORF1ab/nsp16118V118LGtaTta1515AY.440.000091
ORF1ab/nsp16118V118IGtaAta1515B.10.000137
ORF1ab/nsp16118V118LGtaTta1414AY.1020.000371
ORF1ab/nsp16118V118LGtaTta1414AY.1200.000521
ORF1ab/nsp16118V118LGtaTta1314AY.250.000078
ORF1ab/nsp16118V118LGtaCta114AY.250.000006
ORF1ab/nsp16118V118LGtaTta1313B.10.000119
ORF1ab/nsp16118V118VgtAgtG1212B.1.5960.001046
ORF1ab/nsp16118V118LGtaTta1111AY.230.000767
ORF1ab/nsp16118V118FGtATtT610All0.000001
ORF1ab/nsp16118V118FGtATtC410All0.000001
ORF1ab/nsp16118V118AgTagCa99All0.000002
ORF1ab/nsp16118V118IGtaAta99AY.1030.000056
ORF1ab/nsp16118V118LGtaTta99AY.390.000222
ORF1ab/nsp16118V118LGtaTta99AY.46.50.001786
ORF1ab/nsp16118V118VgtAgtG99B.1.6050.053571
ORF1ab/nsp16118V118LGtaTta99P.10.000142
ORF1ab/nsp16118V118LGtaTta88B.1.10.000145
ORF1ab/nsp16118V118VgtAgtT570.277778
ORF1ab/nsp16118V118VgtAgtG270.111111
ORF1ab/nsp16118V118GgTagGa47All0.000001
ORF1ab/nsp16118V118GgTAgGT37All0.000001
ORF1ab/nsp16118V118IGtaAta77AY.420.000282
ORF1ab/nsp16118V118LGtaTta77AY.50.000145
ORF1ab/nsp16118V118FGtATtT660.333333
ORF1ab/nsp16118V118GgTAgGT360.166667
ORF1ab/nsp16118V118GgTagGa360.166667
ORF1ab/nsp16118V118LGtaTta66AY.1190.000212
ORF1ab/nsp16118V118VgtAgtG66AY.39.10.000238
ORF1ab/nsp16118V118LGtaTta66AY.46.60.000433
ORF1ab/nsp16118V118LGtaTta66AY.590.003178
ORF1ab/nsp16118V118LGtaTta66AY.98.10.000291
ORF1ab/nsp16118V118IGtaAta66B.1.617.10.000774
ORF1ab/nsp16118V118delGTA---55AY.250.00003
ORF1ab/nsp16118V118IGtaAta55AY.250.00003
ORF1ab/nsp16118V118VgtAgtG55AY.250.00003
ORF1ab/nsp16118V118VgtAgtG55AY.4.20.000108
ORF1ab/nsp16118V118LGtaTta55AY.470.000156
ORF1ab/nsp16118V118LGtaTta55AY.610.000524
ORF1ab/nsp16118V118LGtaTta55AY.90.000338
ORF1ab/nsp16118V118LGtaTta55B.1.1770.000066
ORF1ab/nsp16118V118LGtaTta55B.1.2340.00066
ORF1ab/nsp16118V118LGtaTta440.222222
ORF1ab/nsp16118V118LGtaTta44AY.420.000161
ORF1ab/nsp16118V118LGtaTta44AY.46.40.000658
ORF1ab/nsp16118V118LGtaTta44B.1.1.1530.004381
ORF1ab/nsp16118V118LGtaTta44B.1.1.250.002274
ORF1ab/nsp16118V118FGtATtC44B.1.1.70.000004
ORF1ab/nsp16118V118IGtaAta44B.1.1600.000125
ORF1ab/nsp16118V118LGtaTta44B.1.3490.002859
ORF1ab/nsp16118V118VgtAgtG44B.1.4090.003125
ORF1ab/nsp16118V118IGtaAta44B.1.617.20.000015
ORF1ab/nsp16118V118LGtaTta44C.370.000464
ORF1ab/nsp16118V118VgtAgtG44P.1.20.004624
ORF1ab/nsp16118V118XGTaTGa330.166667
ORF1ab/nsp16118V118CGTATGT330.166667
ORF1ab/nsp16118V118LGtaTta33A.2.50.001497
ORF1ab/nsp16118V118XGTaTGa33All0.000001
ORF1ab/nsp16118V118CGTATGT33All0.000001
ORF1ab/nsp16118V118del1gtAgt-13All0
ORF1ab/nsp16118V118del1gTag-a13All0
ORF1ab/nsp16118V118del1Gta-ta13All0
ORF1ab/nsp16118V118LGtaTta33AY.1070.001398
ORF1ab/nsp16118V118LGtaTta33AY.200.000117
ORF1ab/nsp16118V118IGtaAta33AY.200.000117
ORF1ab/nsp16118V118IGtaAta33AY.230.000209
ORF1ab/nsp16118V118IGtaAta33AY.390.000074
ORF1ab/nsp16118V118delGTA---33AY.40.000005
ORF1ab/nsp16118V118VgtAgtG33AY.40.000005
ORF1ab/nsp16118V118VgtAgtG23AY.430.000009
ORF1ab/nsp16118V118VgtAgtC13AY.430.000004
ORF1ab/nsp16118V118IGtaAta33AY.570.001969
ORF1ab/nsp16118V118IGtaAta33AY.980.000237
ORF1ab/nsp16118V118VgtAgtG33B.1.10.000054
ORF1ab/nsp16118V118LGtaTta33B.1.1.2840.000322
ORF1ab/nsp16118V118LGtaTta33B.1.1.5190.000119
ORF1ab/nsp16118V118VgtAgtG33B.1.2580.0002
ORF1ab/nsp16118V118LGtaTta33B.1.2580.0002
ORF1ab/nsp16118V118VgtAgtG23B.1.617.20.000008
ORF1ab/nsp16118V118VgtAgtT13B.1.617.20.000004
ORF1ab/nsp16118V118delGTA---33P.1.150.000697
ORF1ab/nsp16118V118VgtAgtC33Q.10.000379
ORF1ab/nsp16118V118delGTA---220.111111
ORF1ab/nsp16118V118VgtAgtG22A0.000774
ORF1ab/nsp16118V118IGtaAta22AY.1020.000053
ORF1ab/nsp16118V118VgtAgtG22AY.1180.000125
ORF1ab/nsp16118V118IGtaAta22AY.1200.000074
ORF1ab/nsp16118V118LGtaTta22AY.30.00002
ORF1ab/nsp16118V118IGtaAta22AY.30.00002
ORF1ab/nsp16118V118VgtAgtG22AY.360.000296
ORF1ab/nsp16118V118LGtaTta22AY.39.10.000079
ORF1ab/nsp16118V118delGTA---22AY.4.50.000215
ORF1ab/nsp16118V118delGTA---22AY.430.000009
ORF1ab/nsp16118V118LGtaTta22AY.450.000243
ORF1ab/nsp16118V118IGtaAta22AY.46.60.000144
ORF1ab/nsp16118V118IGtaAta22AY.470.000062
ORF1ab/nsp16118V118LGtaTta22AY.60.000082
ORF1ab/nsp16118V118LGtaTta22AY.650.001066
ORF1ab/nsp16118V118LGtaTta22AY.690.000373
ORF1ab/nsp16118V118IGtaAta22AY.750.000112
ORF1ab/nsp16118V118IGtaAta22AY.800.002257
ORF1ab/nsp16118V118IGtaAta22AY.950.001522
ORF1ab/nsp16118V118VgtAgtT12B.10.000009
ORF1ab/nsp16118V118VgtAgtG12B.10.000009
ORF1ab/nsp16118V118IGtaAta22B.1.1.2940.002532
ORF1ab/nsp16118V118VgtAgtG22B.1.177.600.000437
ORF1ab/nsp16118V118VgtAgtG22B.1.20.000018
ORF1ab/nsp16118V118LGtaTta22B.1.2210.000142
ORF1ab/nsp16118V118LGtaTta22B.1.3110.000549
ORF1ab/nsp16118V118LGtaTta22B.1.3510.000059
ORF1ab/nsp16118V118LGtaTta22B.1.3750.001639
ORF1ab/nsp16118V118LGtaTta22B.1.3960.001411
ORF1ab/nsp16118V118IGtaAta22B.1.4290.000047
ORF1ab/nsp16118V118delGTA---22B.1.617.20.000008
ORF1ab/nsp16118V118IGtaAta22P.10.000032
ORF1ab/nsp16118V118LGtaTta22Q.10.000253
ORF1ab/nsp16118V118LGtaTta11A.10.000282
ORF1ab/nsp16118V118VgtAgtC11A.20.000662
ORF1ab/nsp16118V118AgTagCa11A.2.40.003367
ORF1ab/nsp16118V118LGtaTta11A.23.10.000704
ORF1ab/nsp16118V118delGTA---11AD.20.000219
ORF1ab/nsp16118V118del2gTAg--11All0
ORF1ab/nsp16118V118del1gtAgt-11AY.1000.000046
ORF1ab/nsp16118V118AgTagCa11AY.1020.000027
ORF1ab/nsp16118V118VgtAgtG11AY.1020.000027
ORF1ab/nsp16118V118VgtAgtG11AY.1030.000006
ORF1ab/nsp16118V118LGtaTta11AY.1080.001103
ORF1ab/nsp16118V118LGtaTta11AY.1100.000113
ORF1ab/nsp16118V118IGtaAta11AY.1130.000142
ORF1ab/nsp16118V118LGtaTta11AY.1160.000287
ORF1ab/nsp16118V118LGtaTta11AY.1170.000085
ORF1ab/nsp16118V118IGtaAta11AY.1180.000063
ORF1ab/nsp16118V118delGTA---11AY.1200.000037
ORF1ab/nsp16118V118VgtAgtG11AY.1200.000037
ORF1ab/nsp16118V118LGtaTta11AY.1210.000135
ORF1ab/nsp16118V118AgTagCa11AY.130.000161
ORF1ab/nsp16118V118LGtaTta11AY.130.000161
ORF1ab/nsp16118V118LGtaTta11AY.240.000431
ORF1ab/nsp16118V118IGtaAta11AY.270.000065
ORF1ab/nsp16118V118IGtaAta11AY.290.000016
ORF1ab/nsp16118V118VgtAgtG11AY.3.10.000085
ORF1ab/nsp16118V118delGTA---11AY.330.000067
ORF1ab/nsp16118V118LGtaTta11AY.340.000097
ORF1ab/nsp16118V118LGtaTta11AY.350.000233
ORF1ab/nsp16118V118delGTA---11AY.360.000148
ORF1ab/nsp16118V118VgtAgtG11AY.390.000025
ORF1ab/nsp16118V118IGtaAta11AY.4.20.000022
ORF1ab/nsp16118V118LGtaTta11AY.4.20.000022
ORF1ab/nsp16118V118LGtaTta11AY.4.40.000409
ORF1ab/nsp16118V118AgTagCa11AY.440.000006
ORF1ab/nsp16118V118IGtaAta11AY.46.40.000165
ORF1ab/nsp16118V118IGtaAta11AY.50.000021
ORF1ab/nsp16118V118VgtAgtT11AY.50.000021
ORF1ab/nsp16118V118LGtaTta11AY.520.000814
ORF1ab/nsp16118V118LGtaTta11AY.540.000095
ORF1ab/nsp16118V118IGtaAta11AY.70.000196
ORF1ab/nsp16118V118LGtaTta11AY.710.000475
ORF1ab/nsp16118V118VgtAgtG11AY.740.000116
ORF1ab/nsp16118V118LGtaTta11AY.840.000437
ORF1ab/nsp16118V118LGtaTta11AY.860.00083
ORF1ab/nsp16118V118IGtaAta11AY.9.20.000037
ORF1ab/nsp16118V118LGtaTta11AY.9.20.000037
ORF1ab/nsp16118V118LGtaTta11AY.900.000684
ORF1ab/nsp16118V118delGTA---11B.10.000009
ORF1ab/nsp16118V118AgTagCa11B.10.000009
ORF1ab/nsp16118V118del1Gta-ta11B.10.000009
ORF1ab/nsp16118V118LGtaTta11B.1.1.280.000311
ORF1ab/nsp16118V118VgtAgtG11B.1.1.330.000421
ORF1ab/nsp16118V118AgTagCa11B.1.1.3720.000689
ORF1ab/nsp16118V118LGtaTta11B.1.1.500.000679
ORF1ab/nsp16118V118VgtAgtG11B.1.1.5190.00004
ORF1ab/nsp16118V118del1gTag-a11B.1.1.70.000001
ORF1ab/nsp16118V118AgTagCa11B.1.1.70.000001
ORF1ab/nsp16118V118delGTA---11B.1.1.700.000341
ORF1ab/nsp16118V118AgTagCa11B.1.160.120.00641
ORF1ab/nsp16118V118LGtaTta11B.1.160.300.002976
ORF1ab/nsp16118V118del2gTAg--11B.1.1770.000013
ORF1ab/nsp16118V118VgtAgtG11B.1.1770.000013
ORF1ab/nsp16118V118LGtaTta11B.1.177.40.000211
ORF1ab/nsp16118V118LGtaTta11B.1.177.440.000519
ORF1ab/nsp16118V118delGTA---11B.1.177.620.001192
ORF1ab/nsp16118V118delGTA---11B.1.177.70.000165
ORF1ab/nsp16118V118GgTagGa11B.1.177.810.000189
ORF1ab/nsp16118V118delGTA---11B.1.177.90.001332
ORF1ab/nsp16118V118VgtAgtT11B.1.2210.000071
ORF1ab/nsp16118V118LGtaTta11B.1.2430.00007
ORF1ab/nsp16118V118VgtAgtG11B.1.2430.00007
ORF1ab/nsp16118V118delGTA---11B.1.2580.000067
ORF1ab/nsp16118V118LGtaTta11B.1.258.170.000104
ORF1ab/nsp16118V118VgtAgtG11B.1.3260.007576
ORF1ab/nsp16118V118AgTagCa11B.1.360.000146
ORF1ab/nsp16118V118LGtaTta11B.1.360.000146
ORF1ab/nsp16118V118delGTA---11B.1.36.290.000517
ORF1ab/nsp16118V118LGtaTta11B.1.3610.001289
ORF1ab/nsp16118V118LGtaTta11B.1.4220.000812
ORF1ab/nsp16118V118LGtaTta11B.1.4530.003236
ORF1ab/nsp16118V118LGtaTta11B.1.4560.003268
ORF1ab/nsp16118V118LGtaTta11B.1.4990.00105
ORF1ab/nsp16118V118LGtaTta11B.1.5030.002488
ORF1ab/nsp16118V118delGTA---11B.1.5250.000113
ORF1ab/nsp16118V118IGtaAta11B.1.5260.000024
ORF1ab/nsp16118V118LGtaTta11B.1.5950.000261
ORF1ab/nsp16118V118delGTA---11B.1.6200.000946
ORF1ab/nsp16118V118LGtaTta11B.1.6210.000089
ORF1ab/nsp16118V118IGtaAta11B.1.6370.000073
ORF1ab/nsp16118V118LGtaTta11B.400.000364
ORF1ab/nsp16118V118LGtaTta11C.10.002392
ORF1ab/nsp16118V118LGtaTta11C.20.016129
ORF1ab/nsp16118V118IGtaAta11D.20.000075
ORF1ab/nsp16118V118LGtaTta11P.1.17.10.000875
ORF1ab/nsp16118V118IGtaAta11Q.10.000126
ORF1ab/nsp16118V118delGTA---11Q.20.000613
ORF1ab/nsp16118V118IGtaAta11R.10.00009
ORF1ab/nsp16118V118VgtAgtG11R.10.00009
ORF1ab/nsp16118V118VgtAgtG11U.10.012821
ORF1ab/nsp16118V118VgtAgtG11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.