CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 116 & Codon = Aca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16116A116TA6914TnonsynGcaAca124124121004-21006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16116A116TGcaAca124124All0.000024
ORF1ab/nsp16116A116TGcaAca2020AY.250.00012
ORF1ab/nsp16116A116TGcaAca1616B.1.10.00029
ORF1ab/nsp16116A116TGcaAca1515AY.40.000023
ORF1ab/nsp16116A116TGcaAca1111P.10.000173
ORF1ab/nsp16116A116TGcaAca99AY.1030.000056
ORF1ab/nsp16116A116TGcaAca77B.1.1.70.000006
ORF1ab/nsp16116A116TGcaAca66B.1.2320.003224
ORF1ab/nsp16116A116TGcaAca66B.1.617.20.000023
ORF1ab/nsp16116A116TGcaAca66P.1.20.006936
ORF1ab/nsp16116A116TGcaAca44B.1.1600.000125
ORF1ab/nsp16116A116TGcaAca33B.10.000027
ORF1ab/nsp16116A116TGcaAca22B0.000256
ORF1ab/nsp16116A116TGcaAca22B.1.3670.001585
ORF1ab/nsp16116A116TGcaAca22B.1.5170.000854
ORF1ab/nsp16116A116TGcaAca11AY.116.10.000311
ORF1ab/nsp16116A116TGcaAca11AY.120.000316
ORF1ab/nsp16116A116TGcaAca11AY.280.00189
ORF1ab/nsp16116A116TGcaAca11AY.290.000016
ORF1ab/nsp16116A116TGcaAca11AY.340.000097
ORF1ab/nsp16116A116TGcaAca11AY.420.00004
ORF1ab/nsp16116A116TGcaAca11AY.430.000004
ORF1ab/nsp16116A116TGcaAca11AY.440.000006
ORF1ab/nsp16116A116TGcaAca11AY.470.000031
ORF1ab/nsp16116A116TGcaAca11AY.530.000288
ORF1ab/nsp16116A116TGcaAca11AY.940.000443
ORF1ab/nsp16116A116TGcaAca11B.1.1.2370.005405
ORF1ab/nsp16116A116TGcaAca11B.1.177.70.000165
ORF1ab/nsp16116A116TGcaAca11B.1.177.90.001332
ORF1ab/nsp16116A116TGcaAca11B.1.20.000009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.