CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 116

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16116A116SA6914SnonsynGcaTca566656590.99876521004-21006
ORF1ab/nsp16116A116SA6914SnonsynGcATcT566640.00070596521004-21006
ORF1ab/nsp16116A116SA6914SnonsynGcATcC566630.00052947421004-21006
ORF1ab/nsp16116A116VA6914VnonsyngCagTa292929240.99829321004-21006
ORF1ab/nsp16116A116VA6914VnonsyngCAgTT292940.0013656521004-21006
ORF1ab/nsp16116A116VA6914VnonsyngCAgTC292910.00034141321004-21006
ORF1ab/nsp16116A116AA6914AsyngcAgcG7696560.85305621004-21006
ORF1ab/nsp16116A116AA6914AsyngcAgcT769970.12613821004-21006
ORF1ab/nsp16116A116AA6914AsyngcAgcC769160.020806221004-21006
ORF1ab/nsp16116A116TA6914TnonsynGcaAca124124121004-21006
ORF1ab/nsp16116A116delA6914deldelGCA---5151121004-21006
ORF1ab/nsp16116A116GA6914GnonsyngCagGa51450.88235321004-21006
ORF1ab/nsp16116A116GA6914GnonsyngCAgGC5130.058823521004-21006
ORF1ab/nsp16116A116GA6914GnonsyngCAgGT5130.058823521004-21006
ORF1ab/nsp16116A116EA6914EnonsyngCagAa3535121004-21006
ORF1ab/nsp16116A116PA6914PnonsynGcaCca1717121004-21006
ORF1ab/nsp16116A116LA6914LnonsynGCaTTa66121004-21006
ORF1ab/nsp16116A116del1A6914del1delGca-ca630.521004-21006
ORF1ab/nsp16116A116del1A6914del1delgCAg-G620.33333321004-21006
ORF1ab/nsp16116A116del1A6914del1delgcAgc-610.16666721004-21006
ORF1ab/nsp16116A116XA6914XnonsynGCaTGa430.7521004-21006
ORF1ab/nsp16116A116CA6914CnonsynGCATGT420.521004-21006
ORF1ab/nsp16116A116CA6914CnonsynGCATGC420.521004-21006
ORF1ab/nsp16116A116XA6914XnonsynGCaTAa410.2521004-21006
ORF1ab/nsp16116A116KA6914KnonsynGCaAAa33121004-21006
ORF1ab/nsp16116A116FA6914FnonsynGCATTT320.66666721004-21006
ORF1ab/nsp16116A116FA6914FnonsynGCATTC310.33333321004-21006
ORF1ab/nsp16116A116YA6914YnonsynGCATAT11121004-21006
ORF1ab/nsp16116A116DA6914DnonsyngCAgAT11121004-21006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16116A116SGcaTca56595666All0.001082
ORF1ab/nsp16116A116SGcATcT45666All0.000001
ORF1ab/nsp16116A116SGcATcC35666All0.000001
ORF1ab/nsp16116A116VgCagTa29242929All0.000559
ORF1ab/nsp16116A116VgCAgTT42929All0.000001
ORF1ab/nsp16116A116VgCAgTC12929All0
ORF1ab/nsp16116A116SGcaTca11851185AZ.20.972906
ORF1ab/nsp16116A116SGcaTca11501150AZ.10.997398
ORF1ab/nsp16116A116AgcAgcG656769All0.000125
ORF1ab/nsp16116A116AgcAgcT97769All0.000019
ORF1ab/nsp16116A116AgcAgcC16769All0.000003
ORF1ab/nsp16116A116SGcaTca626626AZ.30.951368
ORF1ab/nsp16116A116VgCagTa537537B.1.1.70.000481
ORF1ab/nsp16116A116SGcaTca526526B.1.1.70.000471
ORF1ab/nsp16116A116AgcAgcG508519B.1.1.70.000455
ORF1ab/nsp16116A116AgcAgcT11519B.1.1.70.00001
ORF1ab/nsp16116A116VgCagTa406406AY.330.027112
ORF1ab/nsp16116A116VgCagTa357357AY.40.000556
ORF1ab/nsp16116A116SGcaTca223223AY.40.000347
ORF1ab/nsp16116A116SGcaTca182182B.1.20.001603
ORF1ab/nsp16116A116SGcaTca176176B.1.617.20.000663
ORF1ab/nsp16116A116SGcaTca148148B.1.1.3180.044659
ORF1ab/nsp16116A116TGcaAca124124All0.000024
ORF1ab/nsp16116A116SGcaTca123123P.1.140.00588
ORF1ab/nsp16116A116SGcaTca122122AZ.2.10.99187
ORF1ab/nsp16116A116VgCagTa119119AY.290.001877
ORF1ab/nsp16116A116VgCagTa118118P.10.001859
ORF1ab/nsp16116A116VgCagTa117117AY.440.000712
ORF1ab/nsp16116A116SGcaTca111111P.1.70.035441
ORF1ab/nsp16116A116VgCagTa106106AY.29.10.023374
ORF1ab/nsp16116A116SGcaTca9999AY.430.000439
ORF1ab/nsp16116A116SGcaTca9292AY.260.002605
ORF1ab/nsp16116A116SGcaTca9191B.1.5250.010298
ORF1ab/nsp16116A116VgCagTa9191B.1.617.20.000343
ORF1ab/nsp16116A116SGcaTca8282AY.440.000499
ORF1ab/nsp16116A116VgCagTa8080B.1.20.000704
ORF1ab/nsp16116A116SGcaTca6969AY.1030.000428
ORF1ab/nsp16116A116VgCagTa6868B.10.000623
ORF1ab/nsp16116A116VgCagTa6262AY.430.000275
ORF1ab/nsp16116A116VgCagTa5757AY.1030.000354
ORF1ab/nsp16116A116VgCagTa5757B.1.1770.000751
ORF1ab/nsp16116A116VgCagTa5353AY.420.002132
ORF1ab/nsp16116A116AgcAgcT4652AY.39.10.001822
ORF1ab/nsp16116A116AgcAgcG652AY.39.10.000238
ORF1ab/nsp16116A116delGCA---5151All0.00001
ORF1ab/nsp16116A116GgCagGa4551All0.000009
ORF1ab/nsp16116A116GgCAgGC351All0.000001
ORF1ab/nsp16116A116GgCAgGT351All0.000001
ORF1ab/nsp16116A116VgCagTa4949B.1.10.000889
ORF1ab/nsp16116A116SGcaTca4747B.1.10.000853
ORF1ab/nsp16116A116VgCagTa4545AY.1190.001589
ORF1ab/nsp16116A116AgcAgcG4445AY.390.001087
ORF1ab/nsp16116A116AgcAgcT145AY.390.000025
ORF1ab/nsp16116A116SGcaTca4040B.10.000366
ORF1ab/nsp16116A116VgCagTa4040B.1.4270.00202
ORF1ab/nsp16116A116GgCagGa3939AY.40.000061
ORF1ab/nsp16116A116SGcaTca3636AY.1180.002255
ORF1ab/nsp16116A116EgCagAa3535All0.000007
ORF1ab/nsp16116A116VgCagTa3333D.20.002476
ORF1ab/nsp16116A116SGcaTca3232AY.1020.000848
ORF1ab/nsp16116A116VgCagTa3131AY.250.000186
ORF1ab/nsp16116A116VgCagTa2929AY.30.000288
ORF1ab/nsp16116A116SGcaTca2525AY.250.00015
ORF1ab/nsp16116A116EgCagAa2424B.1.1.2770.018209
ORF1ab/nsp16116A116VgCagTa2323AY.1170.001944
ORF1ab/nsp16116A116VgCagTa2323B.1.1.5260.08156
ORF1ab/nsp16116A116SGcaTca2323B.1.1600.000717
ORF1ab/nsp16116A116SGcaTca2121AU.20.050847
ORF1ab/nsp16116A116VgCagTa2121B.1.5260.000494
ORF1ab/nsp16116A116TGcaAca2020AY.250.00012
ORF1ab/nsp16116A116SGcaTca1818AY.200.0007
ORF1ab/nsp16116A116SGcaTca1818AY.290.000284
ORF1ab/nsp16116A116AgcAgcG1818B.1.6210.001593
ORF1ab/nsp16116A116PGcaCca1717All0.000003
ORF1ab/nsp16116A116delGCA---1717B.1.1.70.000015
ORF1ab/nsp16116A116VgCagTa1717B.1.930.015873
ORF1ab/nsp16116A116TGcaAca1616B.1.10.00029
ORF1ab/nsp16116A116AgcAgcG1516P.10.000236
ORF1ab/nsp16116A116AgcAgcC116P.10.000016
ORF1ab/nsp16116A116TGcaAca1515AY.40.000023
ORF1ab/nsp16116A116SGcaTca1515AY.750.00084
ORF1ab/nsp16116A116SGcaTca1515B.1.1.5190.000596
ORF1ab/nsp16116A116VgCagTa1414AY.46.60.001011
ORF1ab/nsp16116A116SGcaTca1414B0.001789
ORF1ab/nsp16116A116SGcaTca1313B.1.4290.000306
ORF1ab/nsp16116A116SGcaTca1212B.1.1770.000158
ORF1ab/nsp16116A116SGcaTca1111A.290.058511
ORF1ab/nsp16116A116SGcaTca1111AY.390.000272
ORF1ab/nsp16116A116PGcaCca1111AY.40.000017
ORF1ab/nsp16116A116VgCagTa1111B.1.4970.003462
ORF1ab/nsp16116A116VgCagTa1111B.1.5160.021526
ORF1ab/nsp16116A116TGcaAca1111P.10.000173
ORF1ab/nsp16116A116SGcaTca1010AY.1000.00046
ORF1ab/nsp16116A116VgCagTa1010AY.270.000647
ORF1ab/nsp16116A116AgcAgcG910AY.30.00009
ORF1ab/nsp16116A116AgcAgcT110AY.30.00001
ORF1ab/nsp16116A116VgCagTa1010AY.470.000311
ORF1ab/nsp16116A116VgCagTa910B.1.2210.000639
ORF1ab/nsp16116A116VgCAgTC110B.1.2210.000071
ORF1ab/nsp16116A116SGcaTca490.222222
ORF1ab/nsp16116A116SGcATcT390.166667
ORF1ab/nsp16116A116SGcATcC290.111111
ORF1ab/nsp16116A116VgCagTa99AY.1000.000414
ORF1ab/nsp16116A116AgcAgcG89AY.1020.000212
ORF1ab/nsp16116A116AgcAgcT19AY.1020.000027
ORF1ab/nsp16116A116TGcaAca99AY.1030.000056
ORF1ab/nsp16116A116SGcaTca99AY.1190.000318
ORF1ab/nsp16116A116SGcaTca99AY.330.000601
ORF1ab/nsp16116A116AgcAgcG69AY.40.000009
ORF1ab/nsp16116A116AgcAgcT39AY.40.000005
ORF1ab/nsp16116A116SGcaTca99B.1.160.260.021792
ORF1ab/nsp16116A116VgCagTa99B.1.5960.000784
ORF1ab/nsp16116A116VgCagTa88B.1.2430.000557
ORF1ab/nsp16116A116SGcaTca88B.1.3110.002197
ORF1ab/nsp16116A116SGcaTca88B.1.4270.000404
ORF1ab/nsp16116A116SGcaTca88B.1.6300.041885
ORF1ab/nsp16116A116AgcAgcT88B.6.80.066116
ORF1ab/nsp16116A116GgCagGa370.166667
ORF1ab/nsp16116A116GgCAgGC370.166667
ORF1ab/nsp16116A116GgCAgGT170.055556
ORF1ab/nsp16116A116AgcAgcG67AY.1030.000037
ORF1ab/nsp16116A116AgcAgcC17AY.1030.000006
ORF1ab/nsp16116A116SGcaTca77AY.120.002212
ORF1ab/nsp16116A116VgCagTa77AY.390.000173
ORF1ab/nsp16116A116AgcAgcT47AY.440.000024
ORF1ab/nsp16116A116AgcAgcG37AY.440.000018
ORF1ab/nsp16116A116VgCagTa77AY.610.000733
ORF1ab/nsp16116A116TGcaAca77B.1.1.70.000006
ORF1ab/nsp16116A116SGcaTca77C.140.030303
ORF1ab/nsp16116A116SGcaTca77P.10.00011
ORF1ab/nsp16116A116VgCAgTT460.222222
ORF1ab/nsp16116A116AgcAgcT360.166667
ORF1ab/nsp16116A116AgcAgcC360.166667
ORF1ab/nsp16116A116VgCagTa260.111111
ORF1ab/nsp16116A116LGCaTTa66All0.000001
ORF1ab/nsp16116A116del1Gca-ca36All0.000001
ORF1ab/nsp16116A116del1gCAg-G26All0
ORF1ab/nsp16116A116del1gcAgc-16All0
ORF1ab/nsp16116A116SGcaTca66AY.30.00006
ORF1ab/nsp16116A116VgCagTa66AY.3.10.000512
ORF1ab/nsp16116A116SGcaTca66AY.4.20.00013
ORF1ab/nsp16116A116VgCagTa66AY.4.20.00013
ORF1ab/nsp16116A116VgCagTa66AY.450.00073
ORF1ab/nsp16116A116VgCagTa66AY.460.000624
ORF1ab/nsp16116A116VgCagTa66AY.50.000124
ORF1ab/nsp16116A116VgCagTa66B0.000767
ORF1ab/nsp16116A116SGcaTca66B.1.1.2910.004454
ORF1ab/nsp16116A116VgCagTa66B.1.1.630.002315
ORF1ab/nsp16116A116TGcaAca66B.1.2320.003224
ORF1ab/nsp16116A116VgCagTa66B.1.438.10.000644
ORF1ab/nsp16116A116SGcaTca66B.1.5260.000141
ORF1ab/nsp16116A116SGcaTca66B.1.5960.000523
ORF1ab/nsp16116A116TGcaAca66B.1.617.20.000023
ORF1ab/nsp16116A116AgcAgcG66C.370.000696
ORF1ab/nsp16116A116SGcaTca66N.50.010601
ORF1ab/nsp16116A116TGcaAca66P.1.20.006936
ORF1ab/nsp16116A116VgCagTa66Q.40.002729
ORF1ab/nsp16116A116VgCagTa55AY.1020.000133
ORF1ab/nsp16116A116VgCagTa55AY.1180.000313
ORF1ab/nsp16116A116SGcaTca55AY.120.10.001605
ORF1ab/nsp16116A116delGCA---55AY.250.00003
ORF1ab/nsp16116A116VgCagTa55AY.260.000142
ORF1ab/nsp16116A116SGcaTca55AY.420.000201
ORF1ab/nsp16116A116SGcaTca55AY.470.000156
ORF1ab/nsp16116A116SGcaTca55AY.540.000477
ORF1ab/nsp16116A116VgCagTa55AY.90.000338
ORF1ab/nsp16116A116VgCagTa55B.1.177.120.000758
ORF1ab/nsp16116A116SGcaTca55B.1.360.00073
ORF1ab/nsp16116A116VgCagTa55B.1.36.10.005701
ORF1ab/nsp16116A116VgCagTa55B.1.6370.000365
ORF1ab/nsp16116A116VgCagTa55Q.10.000632
ORF1ab/nsp16116A116XGCaTGa34All0.000001
ORF1ab/nsp16116A116CGCATGC24All0
ORF1ab/nsp16116A116CGCATGT24All0
ORF1ab/nsp16116A116XGCaTAa14All0
ORF1ab/nsp16116A116VgCagTa44AY.1200.000149
ORF1ab/nsp16116A116AgcAgcC34AY.1200.000112
ORF1ab/nsp16116A116AgcAgcG14AY.1200.000037
ORF1ab/nsp16116A116SGcaTca44AY.1210.000541
ORF1ab/nsp16116A116SGcaTca44AY.140.000352
ORF1ab/nsp16116A116SGcaTca44AY.46.40.000658
ORF1ab/nsp16116A116SGcaTca44AY.9.20.000147
ORF1ab/nsp16116A116VgCagTa44AY.9.20.000147
ORF1ab/nsp16116A116SGcaTca44AY.920.001149
ORF1ab/nsp16116A116SGcaTca44B.1.1.2840.00043
ORF1ab/nsp16116A116VgCagTa44B.1.1.3170.001647
ORF1ab/nsp16116A116TGcaAca44B.1.1600.000125
ORF1ab/nsp16116A116VgCagTa44B.1.160.290.016878
ORF1ab/nsp16116A116VgCagTa44B.1.177.860.000734
ORF1ab/nsp16116A116VgCagTa44B.1.1950.020101
ORF1ab/nsp16116A116SGcaTca24B.1.2210.000142
ORF1ab/nsp16116A116SGcATcT14B.1.2210.000071
ORF1ab/nsp16116A116SGcATcC14B.1.2210.000071
ORF1ab/nsp16116A116SGcaTca44B.1.2340.000528
ORF1ab/nsp16116A116SGcaTca44B.1.2580.000266
ORF1ab/nsp16116A116AgcAgcG44B.1.4710.010929
ORF1ab/nsp16116A116AgcAgcT24B.1.617.20.000008
ORF1ab/nsp16116A116AgcAgcG14B.1.617.20.000004
ORF1ab/nsp16116A116AgcAgcC14B.1.617.20.000004
ORF1ab/nsp16116A116SGcaTca44B.1.6210.000354
ORF1ab/nsp16116A116CGCATGC230.111111
ORF1ab/nsp16116A116XGCaTGa230.111111
ORF1ab/nsp16116A116CGCATGT130.055556
ORF1ab/nsp16116A116XGCaTAa130.055556
ORF1ab/nsp16116A116KGCaAAa33All0.000001
ORF1ab/nsp16116A116FGCATTT23All0
ORF1ab/nsp16116A116FGCATTC13All0
ORF1ab/nsp16116A116SGcaTca33AY.1080.003308
ORF1ab/nsp16116A116SGcaTca33AY.1170.000254
ORF1ab/nsp16116A116SGcaTca33AY.1200.000112
ORF1ab/nsp16116A116VgCagTa33AY.1210.000406
ORF1ab/nsp16116A116LGCaTTa33AY.200.000117
ORF1ab/nsp16116A116SGcaTca33AY.370.000948
ORF1ab/nsp16116A116delGCA---33AY.40.000005
ORF1ab/nsp16116A116SGcaTca33AY.4.50.000322
ORF1ab/nsp16116A116VgCagTa33AY.46.30.002801
ORF1ab/nsp16116A116SGcaTca33AY.720.004082
ORF1ab/nsp16116A116SGcaTca33AY.90.000203
ORF1ab/nsp16116A116VgCagTa33AY.99.20.000276
ORF1ab/nsp16116A116TGcaAca33B.10.000027
ORF1ab/nsp16116A116VgCagTa33B.1.1.280.000934
ORF1ab/nsp16116A116VgCagTa33B.1.1.2850.019608
ORF1ab/nsp16116A116SGcaTca33B.1.1.3260.005282
ORF1ab/nsp16116A116VgCagTa33B.1.1.390.001529
ORF1ab/nsp16116A116EgCagAa33B.1.1.70.000003
ORF1ab/nsp16116A116VgCagTa33B.1.1600.000094
ORF1ab/nsp16116A116VgCagTa33B.1.177.210.000229
ORF1ab/nsp16116A116VgCagTa33B.1.3510.000089
ORF1ab/nsp16116A116VgCagTa33B.1.4290.000071
ORF1ab/nsp16116A116VgCagTa33B.30.002492
ORF1ab/nsp16116A116SGcaTca33P.1.100.000808
ORF1ab/nsp16116A116delGCA---33P.1.150.000697
ORF1ab/nsp16116A116VgCagTa33P.1.70.000958
ORF1ab/nsp16116A116delGCA---220.111111
ORF1ab/nsp16116A116del1gCAg-G220.111111
ORF1ab/nsp16116A116FGCATTT220.111111
ORF1ab/nsp16116A116LGCaTTa220.111111
ORF1ab/nsp16116A116SGcaTca22A.300.285714
ORF1ab/nsp16116A116VgCagTa22AY.200.000078
ORF1ab/nsp16116A116SGcaTca22AY.230.000139
ORF1ab/nsp16116A116AgcAgcG22AY.260.000057
ORF1ab/nsp16116A116VgCagTa22AY.350.000466
ORF1ab/nsp16116A116VgCagTa22AY.370.000632
ORF1ab/nsp16116A116delGCA---22AY.4.50.000215
ORF1ab/nsp16116A116delGCA---22AY.430.000009
ORF1ab/nsp16116A116SGcaTca22AY.46.60.000144
ORF1ab/nsp16116A116VgCagTa22AY.480.00093
ORF1ab/nsp16116A116AgcAgcG12AY.50.000021
ORF1ab/nsp16116A116AgcAgcC12AY.50.000021
ORF1ab/nsp16116A116SGcaTca22AY.550.001835
ORF1ab/nsp16116A116VgCagTa22AY.590.001059
ORF1ab/nsp16116A116SGcaTca22AY.75.10.000361
ORF1ab/nsp16116A116VgCagTa22AY.850.000854
ORF1ab/nsp16116A116SGcaTca22AY.9.10.000167
ORF1ab/nsp16116A116VgCagTa22AY.920.000575
ORF1ab/nsp16116A116VgCagTa22AY.940.000885
ORF1ab/nsp16116A116VgCagTa22AY.98.10.000097
ORF1ab/nsp16116A116VgCagTa22AZ.50.007018
ORF1ab/nsp16116A116TGcaAca22B0.000256
ORF1ab/nsp16116A116AgcAgcG22B.10.000018
ORF1ab/nsp16116A116GgCAgGT12B.1.10.000018
ORF1ab/nsp16116A116GgCagGa12B.1.10.000018
ORF1ab/nsp16116A116SGcaTca22B.1.1.2070.002364
ORF1ab/nsp16116A116AgcAgcT22B.1.1.2310.006192
ORF1ab/nsp16116A116VgCagTa22B.1.1.2770.001517
ORF1ab/nsp16116A116VgCagTa22B.1.1.3120.003824
ORF1ab/nsp16116A116SGcaTca22B.1.1.3170.000823
ORF1ab/nsp16116A116SGcaTca22B.1.1.330.000842
ORF1ab/nsp16116A116SGcaTca22B.1.1.3370.007194
ORF1ab/nsp16116A116AgcAgcG22B.1.1.3890.012121
ORF1ab/nsp16116A116VgCagTa22B.1.1.5190.000079
ORF1ab/nsp16116A116SGcaTca22B.1.177.440.001038
ORF1ab/nsp16116A116VgCagTa22B.1.177.690.002967
ORF1ab/nsp16116A116VgCagTa22B.1.177.810.000379
ORF1ab/nsp16116A116GgCagGa12B.1.2210.000071
ORF1ab/nsp16116A116AgcAgcC12B.1.2210.000071
ORF1ab/nsp16116A116GgCAgGT12B.1.2210.000071
ORF1ab/nsp16116A116AgcAgcT12B.1.2210.000071
ORF1ab/nsp16116A116SGcaTca22B.1.3510.000059
ORF1ab/nsp16116A116AgcAgcC22B.1.3510.000059
ORF1ab/nsp16116A116VgCagTa22B.1.360.000292
ORF1ab/nsp16116A116TGcaAca22B.1.3670.001585
ORF1ab/nsp16116A116VgCagTa22B.1.3800.013245
ORF1ab/nsp16116A116AgcAgcG22B.1.4260.002018
ORF1ab/nsp16116A116TGcaAca22B.1.5170.000854
ORF1ab/nsp16116A116AgcAgcG22B.1.5260.000047
ORF1ab/nsp16116A116VgCagTa22B.1.5510.002581
ORF1ab/nsp16116A116delGCA---22B.1.617.20.000008
ORF1ab/nsp16116A116del1Gca-ca22B.1.6270.00404
ORF1ab/nsp16116A116VgCagTa22B.1.6280.000705
ORF1ab/nsp16116A116SGcaTca22C.160.002121
ORF1ab/nsp16116A116SGcaTca22C.370.000232
ORF1ab/nsp16116A116VgCagTa22C.370.000232
ORF1ab/nsp16116A116SGcaTca22C.380.016129
ORF1ab/nsp16116A116SGcaTca22D.20.00015
ORF1ab/nsp16116A116VgCagTa22P.1.10.000635
ORF1ab/nsp16116A116VgCagTa22P.1.100.000539
ORF1ab/nsp16116A116VgCagTa22P.1.120.000968
ORF1ab/nsp16116A116VgCagTa22P.1.140.000096
ORF1ab/nsp16116A116VgCagTa22R.10.00018
ORF1ab/nsp16116A116YGCATAT110.055556
ORF1ab/nsp16116A116DgCAgAT110.055556
ORF1ab/nsp16116A116EgCagAa110.055556
ORF1ab/nsp16116A116VgCagTa11A0.000387
ORF1ab/nsp16116A116VgCagTa11A.10.000282
ORF1ab/nsp16116A116SGcaTca11A.10.000282
ORF1ab/nsp16116A116AgcAgcC11A.2.40.003367
ORF1ab/nsp16116A116VgCagTa11A.2.50.000499
ORF1ab/nsp16116A116VgCagTa11A.210.00277
ORF1ab/nsp16116A116VgCagTa11A.23.10.000704
ORF1ab/nsp16116A116VgCagTa11A.270.001656
ORF1ab/nsp16116A116SGcaTca11A.280.002646
ORF1ab/nsp16116A116delGCA---11AD.20.000219
ORF1ab/nsp16116A116YGCATAT11All0
ORF1ab/nsp16116A116DgCAgAT11All0
ORF1ab/nsp16116A116SGcaTca11AT.10.005128
ORF1ab/nsp16116A116VgCagTa11AU.10.001266
ORF1ab/nsp16116A116VgCagTa11AY.1050.000643
ORF1ab/nsp16116A116SGcaTca11AY.1050.000643
ORF1ab/nsp16116A116VgCagTa11AY.1090.00074
ORF1ab/nsp16116A116SGcaTca11AY.1100.000113
ORF1ab/nsp16116A116VgCagTa11AY.1110.000183
ORF1ab/nsp16116A116SGcaTca11AY.1130.000142
ORF1ab/nsp16116A116VgCagTa11AY.1130.000142
ORF1ab/nsp16116A116VgCagTa11AY.116.10.000311
ORF1ab/nsp16116A116TGcaAca11AY.116.10.000311
ORF1ab/nsp16116A116TGcaAca11AY.120.000316
ORF1ab/nsp16116A116delGCA---11AY.1200.000037
ORF1ab/nsp16116A116SGcaTca11AY.120.2.10.000498
ORF1ab/nsp16116A116SGcaTca11AY.160.00038
ORF1ab/nsp16116A116AgcAgcG11AY.16.10.00047
ORF1ab/nsp16116A116AgcAgcT11AY.20.000356
ORF1ab/nsp16116A116AgcAgcG11AY.230.00007
ORF1ab/nsp16116A116SGcaTca11AY.23.10.000417
ORF1ab/nsp16116A116AgcAgcT11AY.250.000006
ORF1ab/nsp16116A116TGcaAca11AY.280.00189
ORF1ab/nsp16116A116TGcaAca11AY.290.000016
ORF1ab/nsp16116A116PGcaCca11AY.30.00001
ORF1ab/nsp16116A116VgCagTa11AY.300.000396
ORF1ab/nsp16116A116delGCA---11AY.330.000067
ORF1ab/nsp16116A116AgcAgcG11AY.330.000067
ORF1ab/nsp16116A116TGcaAca11AY.340.000097
ORF1ab/nsp16116A116SGcaTca11AY.34.10.00051
ORF1ab/nsp16116A116VgCagTa11AY.34.10.00051
ORF1ab/nsp16116A116SGcaTca11AY.350.000233
ORF1ab/nsp16116A116EgCagAa11AY.360.000148
ORF1ab/nsp16116A116delGCA---11AY.360.000148
ORF1ab/nsp16116A116VgCagTa11AY.360.000148
ORF1ab/nsp16116A116VgCagTa11AY.380.000499
ORF1ab/nsp16116A116EgCagAa11AY.40.000002
ORF1ab/nsp16116A116SGcaTca11AY.4.10.000737
ORF1ab/nsp16116A116PGcaCca11AY.4.10.000737
ORF1ab/nsp16116A116AgcAgcT11AY.4.20.000022
ORF1ab/nsp16116A116PGcaCca11AY.4.20.000022
ORF1ab/nsp16116A116VgCagTa11AY.4.2.10.000149
ORF1ab/nsp16116A116VgCagTa11AY.400.000964
ORF1ab/nsp16116A116SGcaTca11AY.410.000294
ORF1ab/nsp16116A116TGcaAca11AY.420.00004
ORF1ab/nsp16116A116AgcAgcT11AY.430.000004
ORF1ab/nsp16116A116TGcaAca11AY.430.000004
ORF1ab/nsp16116A116PGcaCca11AY.440.000006
ORF1ab/nsp16116A116TGcaAca11AY.440.000006
ORF1ab/nsp16116A116KGCaAAa11AY.440.000006
ORF1ab/nsp16116A116SGcaTca11AY.450.000122
ORF1ab/nsp16116A116AgcAgcG11AY.450.000122
ORF1ab/nsp16116A116AgcAgcG11AY.460.000104
ORF1ab/nsp16116A116SGcaTca11AY.460.000104
ORF1ab/nsp16116A116AgcAgcG11AY.46.60.000072
ORF1ab/nsp16116A116TGcaAca11AY.470.000031
ORF1ab/nsp16116A116SGcaTca11AY.50.000021
ORF1ab/nsp16116A116SGcaTca11AY.5.20.002463
ORF1ab/nsp16116A116SGcaTca11AY.5.40.000277
ORF1ab/nsp16116A116SGcaTca11AY.530.000288
ORF1ab/nsp16116A116TGcaAca11AY.530.000288
ORF1ab/nsp16116A116VgCagTa11AY.530.000288
ORF1ab/nsp16116A116SGcaTca11AY.560.001605
ORF1ab/nsp16116A116VgCagTa11AY.60.000041
ORF1ab/nsp16116A116VgCagTa11AY.620.000436
ORF1ab/nsp16116A116VgCagTa11AY.710.000475
ORF1ab/nsp16116A116SGcaTca11AY.740.000116
ORF1ab/nsp16116A116VgCagTa11AY.750.000056
ORF1ab/nsp16116A116VgCagTa11AY.820.001357
ORF1ab/nsp16116A116VgCagTa11AY.840.000437
ORF1ab/nsp16116A116AgcAgcG11AY.9.2.10.001976
ORF1ab/nsp16116A116TGcaAca11AY.940.000443
ORF1ab/nsp16116A116SGcaTca11AY.980.000079
ORF1ab/nsp16116A116SGcaTca11AY.98.10.000048
ORF1ab/nsp16116A116delGCA---11B.10.000009
ORF1ab/nsp16116A116AgcAgcT11B.1.10.000018
ORF1ab/nsp16116A116SGcaTca11B.1.1.10.000327
ORF1ab/nsp16116A116SGcaTca11B.1.1.1290.009174
ORF1ab/nsp16116A116VgCagTa11B.1.1.130.035714
ORF1ab/nsp16116A116VgCagTa11B.1.1.1640.005155
ORF1ab/nsp16116A116VgCagTa11B.1.1.1980.001468
ORF1ab/nsp16116A116VgCagTa11B.1.1.2070.001182
ORF1ab/nsp16116A116VgCagTa11B.1.1.2140.000055
ORF1ab/nsp16116A116SGcaTca11B.1.1.2160.00089
ORF1ab/nsp16116A116VgCagTa11B.1.1.2220.000204
ORF1ab/nsp16116A116TGcaAca11B.1.1.2370.005405
ORF1ab/nsp16116A116VgCagTa11B.1.1.2790.001121
ORF1ab/nsp16116A116SGcaTca11B.1.1.280.000311
ORF1ab/nsp16116A116VgCagTa11B.1.1.2840.000107
ORF1ab/nsp16116A116VgCagTa11B.1.1.3060.000438
ORF1ab/nsp16116A116VgCagTa11B.1.1.3220.008772
ORF1ab/nsp16116A116VgCagTa11B.1.1.3260.001761
ORF1ab/nsp16116A116VgCagTa11B.1.1.330.000421
ORF1ab/nsp16116A116VgCagTa11B.1.1.3480.000796
ORF1ab/nsp16116A116VgCagTa11B.1.1.370.000193
ORF1ab/nsp16116A116SGcaTca11B.1.1.3970.002252
ORF1ab/nsp16116A116VgCagTa11B.1.1.4030.025641
ORF1ab/nsp16116A116VgCagTa11B.1.1.4340.000349
ORF1ab/nsp16116A116VgCagTa11B.1.1.500.000679
ORF1ab/nsp16116A116KGCaAAa11B.1.1.70.000001
ORF1ab/nsp16116A116GgCagGa11B.1.1.70.000001
ORF1ab/nsp16116A116delGCA---11B.1.1.700.000341
ORF1ab/nsp16116A116VgCagTa11B.1.110.30.000718
ORF1ab/nsp16116A116SGcaTca11B.1.1470.000756
ORF1ab/nsp16116A116VgCagTa11B.1.1570.002985
ORF1ab/nsp16116A116AgcAgcT11B.1.1600.000031
ORF1ab/nsp16116A116PGcaCca11B.1.1600.000031
ORF1ab/nsp16116A116SGcaTca11B.1.160.300.002976
ORF1ab/nsp16116A116SGcaTca11B.1.160.330.004425
ORF1ab/nsp16116A116EgCagAa11B.1.1770.000013
ORF1ab/nsp16116A116PGcaCca11B.1.1770.000013
ORF1ab/nsp16116A116SGcaTca11B.1.177.170.000821
ORF1ab/nsp16116A116SGcaTca11B.1.177.210.000076
ORF1ab/nsp16116A116SGcaTca11B.1.177.40.000211
ORF1ab/nsp16116A116AgcAgcT11B.1.177.440.000519
ORF1ab/nsp16116A116VgCagTa11B.1.177.440.000519
ORF1ab/nsp16116A116AgcAgcG11B.1.177.520.001757
ORF1ab/nsp16116A116SGcaTca11B.1.177.530.002392
ORF1ab/nsp16116A116EgCagAa11B.1.177.600.000218
ORF1ab/nsp16116A116delGCA---11B.1.177.620.001192
ORF1ab/nsp16116A116delGCA---11B.1.177.70.000165
ORF1ab/nsp16116A116VgCagTa11B.1.177.70.000165
ORF1ab/nsp16116A116TGcaAca11B.1.177.70.000165
ORF1ab/nsp16116A116VgCagTa11B.1.177.730.000566
ORF1ab/nsp16116A116delGCA---11B.1.177.90.001332
ORF1ab/nsp16116A116TGcaAca11B.1.177.90.001332
ORF1ab/nsp16116A116VgCagTa11B.1.1890.004292
ORF1ab/nsp16116A116AgcAgcC11B.1.20.000009
ORF1ab/nsp16116A116TGcaAca11B.1.20.000009
ORF1ab/nsp16116A116EgCagAa11B.1.20.000009
ORF1ab/nsp16116A116VgCagTa11B.1.2060.000816
ORF1ab/nsp16116A116AgcAgcT11B.1.2100.002132
ORF1ab/nsp16116A116VgCagTa11B.1.214.10.02
ORF1ab/nsp16116A116VgCagTa11B.1.214.20.0006
ORF1ab/nsp16116A116LGCaTTa11B.1.2210.000071
ORF1ab/nsp16116A116XGCaTGa11B.1.2210.000071
ORF1ab/nsp16116A116CGCATGT11B.1.2210.000071
ORF1ab/nsp16116A116FGCATTC11B.1.2210.000071
ORF1ab/nsp16116A116VgCagTa11B.1.2340.000132
ORF1ab/nsp16116A116SGcaTca11B.1.2370.004975
ORF1ab/nsp16116A116AgcAgcT11B.1.2430.00007
ORF1ab/nsp16116A116SGcaTca11B.1.2430.00007
ORF1ab/nsp16116A116SGcaTca11B.1.2510.021739
ORF1ab/nsp16116A116delGCA---11B.1.2580.000067
ORF1ab/nsp16116A116delGCA---11B.1.258.110.000396
ORF1ab/nsp16116A116AgcAgcG11B.1.258.70.001912
ORF1ab/nsp16116A116SGcaTca11B.1.3060.005714
ORF1ab/nsp16116A116VgCagTa11B.1.3360.002439
ORF1ab/nsp16116A116EgCagAa11B.1.3510.00003
ORF1ab/nsp16116A116VgCagTa11B.1.3560.001727
ORF1ab/nsp16116A116VgCagTa11B.1.36.20.010753
ORF1ab/nsp16116A116delGCA---11B.1.36.290.000517
ORF1ab/nsp16116A116SGcaTca11B.1.36.290.000517
ORF1ab/nsp16116A116SGcaTca11B.1.36.80.001
ORF1ab/nsp16116A116AgcAgcC11B.1.3670.000792
ORF1ab/nsp16116A116VgCagTa11B.1.3690.000285
ORF1ab/nsp16116A116VgCagTa11B.1.3770.004566
ORF1ab/nsp16116A116VgCagTa11B.1.3810.007812
ORF1ab/nsp16116A116VgCagTa11B.1.3960.000706
ORF1ab/nsp16116A116SGcaTca11B.1.3960.000706
ORF1ab/nsp16116A116VgCagTa11B.1.4220.000812
ORF1ab/nsp16116A116AgcAgcT11B.1.4270.00005
ORF1ab/nsp16116A116AgcAgcT11B.1.4290.000024
ORF1ab/nsp16116A116AgcAgcT11B.1.438.10.000107
ORF1ab/nsp16116A116VgCagTa11B.1.4410.009615
ORF1ab/nsp16116A116VgCagTa11B.1.4620.007246
ORF1ab/nsp16116A116SGcaTca11B.1.466.20.000391
ORF1ab/nsp16116A116delGCA---11B.1.5250.000113
ORF1ab/nsp16116A116VgCagTa11B.1.5250.000113
ORF1ab/nsp16116A116AgcAgcG11B.1.5250.000113
ORF1ab/nsp16116A116del1Gca-ca11B.1.5260.000024
ORF1ab/nsp16116A116SGcaTca11B.1.5300.007143
ORF1ab/nsp16116A116SGcaTca11B.1.5430.01
ORF1ab/nsp16116A116SGcaTca11B.1.5600.00463
ORF1ab/nsp16116A116SGcaTca11B.1.5610.000397
ORF1ab/nsp16116A116VgCagTa11B.1.5650.00081
ORF1ab/nsp16116A116SGcaTca11B.1.5650.00081
ORF1ab/nsp16116A116SGcaTca11B.1.5730.006098
ORF1ab/nsp16116A116SGcaTca11B.1.5760.000907
ORF1ab/nsp16116A116VgCagTa11B.1.5800.004065
ORF1ab/nsp16116A116SGcaTca11B.1.5970.00463
ORF1ab/nsp16116A116SGcaTca11B.1.6030.010638
ORF1ab/nsp16116A116SGcaTca11B.1.617.10.000129
ORF1ab/nsp16116A116VgCagTa11B.1.617.10.000129
ORF1ab/nsp16116A116del1gcAgc-11B.1.617.20.000004
ORF1ab/nsp16116A116EgCagAa11B.1.617.20.000004
ORF1ab/nsp16116A116KGCaAAa11B.1.617.20.000004
ORF1ab/nsp16116A116SGcaTca11B.1.6180.004032
ORF1ab/nsp16116A116SGcaTca11B.1.6200.000946
ORF1ab/nsp16116A116delGCA---11B.1.6200.000946
ORF1ab/nsp16116A116AgcAgcT11B.1.930.000934
ORF1ab/nsp16116A116VgCagTa11B.290.003509
ORF1ab/nsp16116A116VgCagTa11B.400.000364
ORF1ab/nsp16116A116VgCagTa11B.60.00091
ORF1ab/nsp16116A116VgCagTa11C.110.010638
ORF1ab/nsp16116A116VgCagTa11C.270.018519
ORF1ab/nsp16116A116AgcAgcT11P.1.140.000048
ORF1ab/nsp16116A116VgCagTa11P.1.150.000232
ORF1ab/nsp16116A116SGcaTca11P.1.160.000374
ORF1ab/nsp16116A116SGcaTca11P.1.80.004785
ORF1ab/nsp16116A116SGcaTca11Q.20.000613
ORF1ab/nsp16116A116delGCA---11Q.20.000613
ORF1ab/nsp16116A116VgCagTa11Q.70.001111
ORF1ab/nsp16116A116SGcaTca11Q.80.000165
ORF1ab/nsp16116A116VgCagTa11Q.80.000165