CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 116 | A116S | A6914S | nonsyn | Gca | Tca | 5666 | 5659 | 0.998765 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116S | A6914S | nonsyn | GcA | TcT | 5666 | 4 | 0.000705965 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116S | A6914S | nonsyn | GcA | TcC | 5666 | 3 | 0.000529474 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116V | A6914V | nonsyn | gCa | gTa | 2929 | 2924 | 0.998293 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116V | A6914V | nonsyn | gCA | gTT | 2929 | 4 | 0.00136565 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116V | A6914V | nonsyn | gCA | gTC | 2929 | 1 | 0.000341413 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116A | A6914A | syn | gcA | gcG | 769 | 656 | 0.853056 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116A | A6914A | syn | gcA | gcT | 769 | 97 | 0.126138 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116A | A6914A | syn | gcA | gcC | 769 | 16 | 0.0208062 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116T | A6914T | nonsyn | Gca | Aca | 124 | 124 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116del | A6914del | del | GCA | --- | 51 | 51 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116G | A6914G | nonsyn | gCa | gGa | 51 | 45 | 0.882353 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116G | A6914G | nonsyn | gCA | gGC | 51 | 3 | 0.0588235 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116G | A6914G | nonsyn | gCA | gGT | 51 | 3 | 0.0588235 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116E | A6914E | nonsyn | gCa | gAa | 35 | 35 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116P | A6914P | nonsyn | Gca | Cca | 17 | 17 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116L | A6914L | nonsyn | GCa | TTa | 6 | 6 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116del1 | A6914del1 | del | Gca | -ca | 6 | 3 | 0.5 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116del1 | A6914del1 | del | gCA | g-G | 6 | 2 | 0.333333 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116del1 | A6914del1 | del | gcA | gc- | 6 | 1 | 0.166667 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116X | A6914X | nonsyn | GCa | TGa | 4 | 3 | 0.75 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116C | A6914C | nonsyn | GCA | TGT | 4 | 2 | 0.5 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116C | A6914C | nonsyn | GCA | TGC | 4 | 2 | 0.5 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116X | A6914X | nonsyn | GCa | TAa | 4 | 1 | 0.25 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116K | A6914K | nonsyn | GCa | AAa | 3 | 3 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116F | A6914F | nonsyn | GCA | TTT | 3 | 2 | 0.666667 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116F | A6914F | nonsyn | GCA | TTC | 3 | 1 | 0.333333 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116Y | A6914Y | nonsyn | GCA | TAT | 1 | 1 | 1 | 21004-21006 |
ORF1ab/nsp16 | 116 | A116D | A6914D | nonsyn | gCA | gAT | 1 | 1 | 1 | 21004-21006 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 5659 | 5666 | All | 0.001082 |
ORF1ab/nsp16 | 116 | A116S | GcA | TcT | 4 | 5666 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116S | GcA | TcC | 3 | 5666 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2924 | 2929 | All | 0.000559 |
ORF1ab/nsp16 | 116 | A116V | gCA | gTT | 4 | 2929 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116V | gCA | gTC | 1 | 2929 | All | 0 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1185 | 1185 | AZ.2 | 0.972906 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1150 | 1150 | AZ.1 | 0.997398 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 656 | 769 | All | 0.000125 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 97 | 769 | All | 0.000019 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 16 | 769 | All | 0.000003 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 626 | 626 | AZ.3 | 0.951368 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 537 | 537 | B.1.1.7 | 0.000481 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 526 | 526 | B.1.1.7 | 0.000471 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 508 | 519 | B.1.1.7 | 0.000455 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 11 | 519 | B.1.1.7 | 0.00001 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 406 | 406 | AY.33 | 0.027112 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 357 | 357 | AY.4 | 0.000556 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 223 | 223 | AY.4 | 0.000347 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 182 | 182 | B.1.2 | 0.001603 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 176 | 176 | B.1.617.2 | 0.000663 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 148 | 148 | B.1.1.318 | 0.044659 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 124 | 124 | All | 0.000024 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 123 | 123 | P.1.14 | 0.00588 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 122 | 122 | AZ.2.1 | 0.99187 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 119 | 119 | AY.29 | 0.001877 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 118 | 118 | P.1 | 0.001859 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 117 | 117 | AY.44 | 0.000712 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 111 | 111 | P.1.7 | 0.035441 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 106 | 106 | AY.29.1 | 0.023374 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 99 | 99 | AY.43 | 0.000439 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 92 | 92 | AY.26 | 0.002605 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 91 | 91 | B.1.525 | 0.010298 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 91 | 91 | B.1.617.2 | 0.000343 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 82 | 82 | AY.44 | 0.000499 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 80 | 80 | B.1.2 | 0.000704 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 69 | 69 | AY.103 | 0.000428 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 68 | 68 | B.1 | 0.000623 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 62 | 62 | AY.43 | 0.000275 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 57 | 57 | AY.103 | 0.000354 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 57 | 57 | B.1.177 | 0.000751 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 53 | 53 | AY.42 | 0.002132 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 46 | 52 | AY.39.1 | 0.001822 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 6 | 52 | AY.39.1 | 0.000238 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 51 | 51 | All | 0.00001 |
ORF1ab/nsp16 | 116 | A116G | gCa | gGa | 45 | 51 | All | 0.000009 |
ORF1ab/nsp16 | 116 | A116G | gCA | gGC | 3 | 51 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116G | gCA | gGT | 3 | 51 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 49 | 49 | B.1.1 | 0.000889 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 47 | 47 | B.1.1 | 0.000853 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 45 | 45 | AY.119 | 0.001589 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 44 | 45 | AY.39 | 0.001087 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 45 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 40 | 40 | B.1.427 | 0.00202 |
ORF1ab/nsp16 | 116 | A116G | gCa | gGa | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 36 | 36 | AY.118 | 0.002255 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 35 | 35 | All | 0.000007 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 33 | 33 | D.2 | 0.002476 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 32 | 32 | AY.102 | 0.000848 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 31 | 31 | AY.25 | 0.000186 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 24 | 24 | B.1.1.277 | 0.018209 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 23 | 23 | AY.117 | 0.001944 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 23 | 23 | B.1.1.526 | 0.08156 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 21 | 21 | AU.2 | 0.050847 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 17 | 17 | All | 0.000003 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 17 | 17 | B.1.93 | 0.015873 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 15 | 16 | P.1 | 0.000236 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 16 | P.1 | 0.000016 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 14 | 14 | AY.46.6 | 0.001011 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 14 | 14 | B | 0.001789 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 11 | 11 | A.29 | 0.058511 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 11 | 11 | B.1.497 | 0.003462 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 11 | 11 | B.1.516 | 0.021526 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 9 | 10 | AY.3 | 0.00009 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 10 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 9 | 10 | B.1.221 | 0.000639 |
ORF1ab/nsp16 | 116 | A116V | gCA | gTC | 1 | 10 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 9 | 0.222222 | |
ORF1ab/nsp16 | 116 | A116S | GcA | TcT | 3 | 9 | 0.166667 | |
ORF1ab/nsp16 | 116 | A116S | GcA | TcC | 2 | 9 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 8 | 9 | AY.102 | 0.000212 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 9 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 6 | 9 | AY.4 | 0.000009 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 3 | 9 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 9 | 9 | B.1.160.26 | 0.021792 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 8 | 8 | B.1.630 | 0.041885 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 8 | 8 | B.6.8 | 0.066116 |
ORF1ab/nsp16 | 116 | A116G | gCa | gGa | 3 | 7 | 0.166667 | |
ORF1ab/nsp16 | 116 | A116G | gCA | gGC | 3 | 7 | 0.166667 | |
ORF1ab/nsp16 | 116 | A116G | gCA | gGT | 1 | 7 | 0.055556 | |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 6 | 7 | AY.103 | 0.000037 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 7 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 4 | 7 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 3 | 7 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 7 | 7 | C.14 | 0.030303 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp16 | 116 | A116V | gCA | gTT | 4 | 6 | 0.222222 | |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 3 | 6 | 0.166667 | |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 3 | 6 | 0.166667 | |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 6 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116L | GCa | TTa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116del1 | Gca | -ca | 3 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116del1 | gCA | g-G | 2 | 6 | All | 0 |
ORF1ab/nsp16 | 116 | A116del1 | gcA | gc- | 1 | 6 | All | 0 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | B | 0.000767 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 6 | 6 | B.1.1.291 | 0.004454 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 6 | 6 | N.5 | 0.010601 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 6 | 6 | P.1.2 | 0.006936 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 5 | 5 | AY.120.1 | 0.001605 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | B.1.36.1 | 0.005701 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp16 | 116 | A116X | GCa | TGa | 3 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116C | GCA | TGC | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 116 | A116C | GCA | TGT | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 116 | A116X | GCa | TAa | 1 | 4 | All | 0 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 3 | 4 | AY.120 | 0.000112 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 4 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 4 | 4 | B.1.160.29 | 0.016878 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 4 | 4 | B.1.195 | 0.020101 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 4 | B.1.221 | 0.000142 |
ORF1ab/nsp16 | 116 | A116S | GcA | TcT | 1 | 4 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116S | GcA | TcC | 1 | 4 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 4 | 4 | B.1.471 | 0.010929 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp16 | 116 | A116C | GCA | TGC | 2 | 3 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116X | GCa | TGa | 2 | 3 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116C | GCA | TGT | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 116 | A116X | GCa | TAa | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 116 | A116K | GCa | AAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp16 | 116 | A116F | GCA | TTT | 2 | 3 | All | 0 |
ORF1ab/nsp16 | 116 | A116F | GCA | TTC | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp16 | 116 | A116L | GCa | TTa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.72 | 0.004082 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.1.285 | 0.019608 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116del1 | gCA | g-G | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116F | GCA | TTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116L | GCa | TTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | A.30 | 0.285714 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | AZ.5 | 0.007018 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 2 | 2 | B | 0.000256 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 116 | A116G | gCA | gGT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 116 | A116G | gCa | gGa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.177.69 | 0.002967 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp16 | 116 | A116G | gCa | gGa | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116G | gCA | gGT | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.380 | 0.013245 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 116 | A116del1 | Gca | -ca | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | C.38 | 0.016129 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp16 | 116 | A116Y | GCA | TAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 116 | A116D | gCA | gAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 116 | A116Y | GCA | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 116 | A116D | gCA | gAT | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 116 | A116K | GCa | AAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 116 | A116K | GCa | AAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 116 | A116G | gCa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 116 | A116P | Gca | Cca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 116 | A116T | Gca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp16 | 116 | A116L | GCa | TTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116X | GCa | TGa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116C | GCA | TGT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116F | GCA | TTC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.251 | 0.021739 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 116 | A116del1 | Gca | -ca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 116 | A116del1 | gcA | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 116 | A116E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 116 | A116K | GCa | AAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp16 | 116 | A116A | gcA | gcT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp16 | 116 | A116del | GCA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp16 | 116 | A116S | Gca | Tca | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp16 | 116 | A116V | gCa | gTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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