CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 108 | D108D | D6906D | syn | gaT | gaC | 705 | 705 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108N | D6906N | nonsyn | Gat | Aat | 672 | 671 | 0.998512 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108N | D6906N | nonsyn | GaT | AaC | 672 | 1 | 0.0014881 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108Y | D6906Y | nonsyn | Gat | Tat | 203 | 203 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108G | D6906G | nonsyn | gAt | gGt | 51 | 50 | 0.980392 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108G | D6906G | nonsyn | gAT | gGC | 51 | 1 | 0.0196078 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108del | D6906del | del | GAT | --- | 42 | 42 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108A | D6906A | nonsyn | gAt | gCt | 27 | 27 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108E | D6906E | nonsyn | gaT | gaG | 18 | 16 | 0.888889 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108E | D6906E | nonsyn | gaT | gaA | 18 | 2 | 0.111111 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108H | D6906H | nonsyn | Gat | Cat | 7 | 7 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108V | D6906V | nonsyn | gAt | gTt | 5 | 5 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108del1 | D6906del1 | del | Gat | -at | 5 | 3 | 0.6 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108del1 | D6906del1 | del | gaT | ga- | 5 | 2 | 0.4 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108S | D6906S | nonsyn | GAT | AGC | 3 | 1 | 0.333333 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108S | D6906S | nonsyn | GAt | TCt | 3 | 1 | 0.333333 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108S | D6906S | nonsyn | GAt | AGt | 3 | 1 | 0.333333 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108del2 | D6906del2 | del | gAT | g-- | 2 | 2 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108I | D6906I | nonsyn | GAt | ATt | 1 | 1 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108T | D6906T | nonsyn | GAt | ACt | 1 | 1 | 1 | 20980-20982 |
ORF1ab/nsp16 | 108 | D108L | D6906L | nonsyn | GAt | CTt | 1 | 1 | 1 | 20980-20982 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 705 | 705 | All | 0.000135 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 671 | 672 | All | 0.000128 |
ORF1ab/nsp16 | 108 | D108N | GaT | AaC | 1 | 672 | All | 0 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 228 | 228 | B.1.617.2 | 0.000859 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 221 | 221 | AY.75 | 0.012381 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 203 | 203 | All | 0.000039 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 183 | 183 | B.1.134 | 1 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 163 | 163 | AY.43 | 0.000722 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 108 | 108 | B.1.617.2 | 0.000407 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 64 | 64 | AY.3 | 0.000637 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 54 | 54 | B.1.617.2 | 0.000203 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 50 | 51 | All | 0.00001 |
ORF1ab/nsp16 | 108 | D108G | gAT | gGC | 1 | 51 | All | 0 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 46 | 46 | AY.43 | 0.000204 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 46 | 46 | B.1.1.7 | 0.000041 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 27 | 27 | All | 0.000005 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 20 | 20 | AY.119 | 0.000706 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 16 | 18 | All | 0.000003 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaA | 2 | 18 | All | 0 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 15 | 15 | AY.4.5 | 0.001612 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 11 | 11 | B.1.480 | 0.027363 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 10 | 10 | B.1.160.20 | 0.089286 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 8 | 8 | AY.114 | 0.001849 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 7 | 7 | All | 0.000001 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 4 | 5 | 0.222222 | |
ORF1ab/nsp16 | 108 | D108N | GaT | AaC | 1 | 5 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108V | gAt | gTt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 108 | D108del1 | Gat | -at | 3 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 108 | D108del1 | gaT | ga- | 2 | 5 | All | 0 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 4 | 4 | B.1.177.17 | 0.003284 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 2 | 3 | 0.111111 | |
ORF1ab/nsp16 | 108 | D108G | gAT | gGC | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108S | GAT | AGC | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 108 | D108S | GAt | TCt | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 108 | D108S | GAt | AGt | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | B.1.124 | 0.023438 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 3 | 3 | B.1.177.80 | 0.005736 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 108 | D108del2 | gAT | g-- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 108 | D108S | GAt | AGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108S | GAT | AGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108del2 | gAT | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 108 | D108V | gAt | gTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108L | GAt | CTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108V | gAt | gTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108I | GAt | ATt | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaA | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp16 | 108 | D108L | GAt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 108 | D108T | GAt | ACt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 108 | D108I | GAt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 108 | D108del1 | Gat | -at | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp16 | 108 | D108del1 | Gat | -at | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp16 | 108 | D108del1 | Gat | -at | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 108 | D108S | GAt | TCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 108 | D108del1 | gaT | ga- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp16 | 108 | D108V | gAt | gTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 108 | D108V | gAt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp16 | 108 | D108del1 | gaT | ga- | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 108 | D108E | gaT | gaG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 108 | D108T | GAt | ACt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 108 | D108del | GAT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 108 | D108Y | Gat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 108 | D108G | gAt | gGt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 108 | D108A | gAt | gCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 108 | D108H | Gat | Cat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 108 | D108D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 108 | D108N | Gat | Aat | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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