CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 108

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16108D108DD6906DsyngaTgaC705705120980-20982
ORF1ab/nsp16108D108ND6906NnonsynGatAat6726710.99851220980-20982
ORF1ab/nsp16108D108ND6906NnonsynGaTAaC67210.001488120980-20982
ORF1ab/nsp16108D108YD6906YnonsynGatTat203203120980-20982
ORF1ab/nsp16108D108GD6906GnonsyngAtgGt51500.98039220980-20982
ORF1ab/nsp16108D108GD6906GnonsyngATgGC5110.019607820980-20982
ORF1ab/nsp16108D108delD6906deldelGAT---4242120980-20982
ORF1ab/nsp16108D108AD6906AnonsyngAtgCt2727120980-20982
ORF1ab/nsp16108D108ED6906EnonsyngaTgaG18160.88888920980-20982
ORF1ab/nsp16108D108ED6906EnonsyngaTgaA1820.11111120980-20982
ORF1ab/nsp16108D108HD6906HnonsynGatCat77120980-20982
ORF1ab/nsp16108D108VD6906VnonsyngAtgTt55120980-20982
ORF1ab/nsp16108D108del1D6906del1delGat-at530.620980-20982
ORF1ab/nsp16108D108del1D6906del1delgaTga-520.420980-20982
ORF1ab/nsp16108D108SD6906SnonsynGATAGC310.33333320980-20982
ORF1ab/nsp16108D108SD6906SnonsynGAtTCt310.33333320980-20982
ORF1ab/nsp16108D108SD6906SnonsynGAtAGt310.33333320980-20982
ORF1ab/nsp16108D108del2D6906del2delgATg--22120980-20982
ORF1ab/nsp16108D108ID6906InonsynGAtATt11120980-20982
ORF1ab/nsp16108D108TD6906TnonsynGAtACt11120980-20982
ORF1ab/nsp16108D108LD6906LnonsynGAtCTt11120980-20982

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16108D108DgaTgaC705705All0.000135
ORF1ab/nsp16108D108NGatAat671672All0.000128
ORF1ab/nsp16108D108NGaTAaC1672All0
ORF1ab/nsp16108D108DgaTgaC228228B.1.617.20.000859
ORF1ab/nsp16108D108NGatAat221221AY.750.012381
ORF1ab/nsp16108D108YGatTat203203All0.000039
ORF1ab/nsp16108D108NGatAat183183B.1.1341
ORF1ab/nsp16108D108DgaTgaC163163AY.430.000722
ORF1ab/nsp16108D108NGatAat108108B.1.617.20.000407
ORF1ab/nsp16108D108DgaTgaC6464AY.30.000637
ORF1ab/nsp16108D108YGatTat5454B.1.617.20.000203
ORF1ab/nsp16108D108GgAtgGt5051All0.00001
ORF1ab/nsp16108D108GgATgGC151All0
ORF1ab/nsp16108D108YGatTat4646AY.430.000204
ORF1ab/nsp16108D108DgaTgaC4646B.1.1.70.000041
ORF1ab/nsp16108D108delGAT---4242All0.000008
ORF1ab/nsp16108D108AgAtgCt2727All0.000005
ORF1ab/nsp16108D108GgAtgGt2222B.1.1.70.00002
ORF1ab/nsp16108D108NGatAat2121B.1.5260.000494
ORF1ab/nsp16108D108NGatAat2020AY.1190.000706
ORF1ab/nsp16108D108YGatTat1919AY.40.00003
ORF1ab/nsp16108D108EgaTgaG1618All0.000003
ORF1ab/nsp16108D108EgaTgaA218All0
ORF1ab/nsp16108D108DgaTgaC1616AY.40.000025
ORF1ab/nsp16108D108NGatAat1616B.1.1.70.000014
ORF1ab/nsp16108D108DgaTgaC1515AY.390.000371
ORF1ab/nsp16108D108DgaTgaC1515AY.4.50.001612
ORF1ab/nsp16108D108DgaTgaC1414AY.440.000085
ORF1ab/nsp16108D108DgaTgaC1414AY.470.000435
ORF1ab/nsp16108D108YGatTat1313AY.440.000079
ORF1ab/nsp16108D108DgaTgaC1212AY.1030.000075
ORF1ab/nsp16108D108delGAT---1212B.1.1.70.000011
ORF1ab/nsp16108D108YGatTat1111AY.460.001145
ORF1ab/nsp16108D108NGatAat1111B.10.000101
ORF1ab/nsp16108D108DgaTgaC1111B.1.4800.027363
ORF1ab/nsp16108D108GgAtgGt1010AY.430.000044
ORF1ab/nsp16108D108DgaTgaC1010B.1.160.200.089286
ORF1ab/nsp16108D108NGatAat1010B.1.3110.002746
ORF1ab/nsp16108D108NGatAat88AY.1140.001849
ORF1ab/nsp16108D108NGatAat88AY.440.000049
ORF1ab/nsp16108D108HGatCat77All0.000001
ORF1ab/nsp16108D108YGatTat77AY.50.000145
ORF1ab/nsp16108D108DgaTgaC66AY.1190.000212
ORF1ab/nsp16108D108NGatAat66AY.250.000036
ORF1ab/nsp16108D108NGatAat450.222222
ORF1ab/nsp16108D108NGaTAaC150.055556
ORF1ab/nsp16108D108VgAtgTt55All0.000001
ORF1ab/nsp16108D108del1Gat-at35All0.000001
ORF1ab/nsp16108D108del1gaTga-25All0
ORF1ab/nsp16108D108DgaTgaC55AY.1130.000712
ORF1ab/nsp16108D108DgaTgaC55AY.230.000349
ORF1ab/nsp16108D108DgaTgaC55AY.250.00003
ORF1ab/nsp16108D108DgaTgaC55AY.460.00052
ORF1ab/nsp16108D108EgaTgaG55B.1.1.70.000004
ORF1ab/nsp16108D108DgaTgaC55B.1.20.000044
ORF1ab/nsp16108D108DgaTgaC55B.1.3510.000149
ORF1ab/nsp16108D108NGatAat44AY.290.000063
ORF1ab/nsp16108D108GgAtgGt44AY.440.000024
ORF1ab/nsp16108D108YGatTat44AY.46.60.000289
ORF1ab/nsp16108D108DgaTgaC44AY.5.40.001107
ORF1ab/nsp16108D108YGatTat44B.10.000037
ORF1ab/nsp16108D108AgAtgCt44B.10.000037
ORF1ab/nsp16108D108AgAtgCt44B.1.1.70.000004
ORF1ab/nsp16108D108NGatAat44B.1.177.170.003284
ORF1ab/nsp16108D108AgAtgCt44B.1.2210.000284
ORF1ab/nsp16108D108YGatTat44B.1.6210.000354
ORF1ab/nsp16108D108GgAtgGt230.111111
ORF1ab/nsp16108D108GgATgGC130.055556
ORF1ab/nsp16108D108SGATAGC13All0
ORF1ab/nsp16108D108SGAtTCt13All0
ORF1ab/nsp16108D108SGAtAGt13All0
ORF1ab/nsp16108D108DgaTgaC33AY.1050.001929
ORF1ab/nsp16108D108DgaTgaC33AY.120.10.000963
ORF1ab/nsp16108D108YGatTat33AY.200.000117
ORF1ab/nsp16108D108DgaTgaC33AY.340.000291
ORF1ab/nsp16108D108GgAtgGt33AY.40.000005
ORF1ab/nsp16108D108EgaTgaG33AY.40.000005
ORF1ab/nsp16108D108delGAT---33AY.40.000005
ORF1ab/nsp16108D108NGatAat33AY.40.000005
ORF1ab/nsp16108D108NGatAat33AY.50.000062
ORF1ab/nsp16108D108DgaTgaC33AY.50.000062
ORF1ab/nsp16108D108NGatAat33AY.9.20.00011
ORF1ab/nsp16108D108DgaTgaC33AY.990.003148
ORF1ab/nsp16108D108NGatAat33B.1.10.000054
ORF1ab/nsp16108D108YGatTat33B.1.1.70.000003
ORF1ab/nsp16108D108DgaTgaC33B.1.1240.023438
ORF1ab/nsp16108D108DgaTgaC33B.1.1770.00004
ORF1ab/nsp16108D108AgAtgCt33B.1.1770.00004
ORF1ab/nsp16108D108NGatAat33B.1.177.800.005736
ORF1ab/nsp16108D108NGatAat33B.1.5510.003871
ORF1ab/nsp16108D108YGatTat33B.1.5950.000783
ORF1ab/nsp16108D108DgaTgaC33P.10.000047
ORF1ab/nsp16108D108delGAT---33P.1.150.000697
ORF1ab/nsp16108D108delGAT---220.111111
ORF1ab/nsp16108D108del2gATg--220.111111
ORF1ab/nsp16108D108SGAtAGt120.055556
ORF1ab/nsp16108D108SGATAGC120.055556
ORF1ab/nsp16108D108del2gATg--22All0
ORF1ab/nsp16108D108DgaTgaC22AY.1020.000053
ORF1ab/nsp16108D108delGAT---22AY.1200.000074
ORF1ab/nsp16108D108delGAT---22AY.250.000012
ORF1ab/nsp16108D108YGatTat22AY.290.000032
ORF1ab/nsp16108D108YGatTat22AY.30.00002
ORF1ab/nsp16108D108YGatTat22AY.3.10.000171
ORF1ab/nsp16108D108NGatAat22AY.390.000049
ORF1ab/nsp16108D108AgAtgCt22AY.40.000003
ORF1ab/nsp16108D108delGAT---22AY.4.50.000215
ORF1ab/nsp16108D108YGatTat22AY.420.00008
ORF1ab/nsp16108D108EgaTgaG22AY.440.000012
ORF1ab/nsp16108D108DgaTgaC22AY.670.000929
ORF1ab/nsp16108D108NGatAat22AY.860.00166
ORF1ab/nsp16108D108DgaTgaC22AY.950.001522
ORF1ab/nsp16108D108GgAtgGt22B.10.000018
ORF1ab/nsp16108D108DgaTgaC22B.10.000018
ORF1ab/nsp16108D108YGatTat22B.1.10.000036
ORF1ab/nsp16108D108DgaTgaC22B.1.10.000036
ORF1ab/nsp16108D108VgAtgTt22B.1.1.70.000002
ORF1ab/nsp16108D108delGAT---22B.1.1770.000026
ORF1ab/nsp16108D108YGatTat22B.1.177.40.000422
ORF1ab/nsp16108D108NGatAat22B.1.20.000018
ORF1ab/nsp16108D108DgaTgaC22B.1.2580.000133
ORF1ab/nsp16108D108AgAtgCt22B.1.258.170.000208
ORF1ab/nsp16108D108DgaTgaC22B.1.5260.000047
ORF1ab/nsp16108D108GgAtgGt22B.1.617.20.000008
ORF1ab/nsp16108D108DgaTgaC22B.1.6230.001073
ORF1ab/nsp16108D108NGatAat22P.10.000032
ORF1ab/nsp16108D108NGatAat22P.1.140.000096
ORF1ab/nsp16108D108HGatCat110.055556
ORF1ab/nsp16108D108DgaTgaC110.055556
ORF1ab/nsp16108D108LGAtCTt110.055556
ORF1ab/nsp16108D108VgAtgTt110.055556
ORF1ab/nsp16108D108IGAtATt110.055556
ORF1ab/nsp16108D108HGatCat11A0.000387
ORF1ab/nsp16108D108EgaTgaA11A.270.001656
ORF1ab/nsp16108D108LGAtCTt11All0
ORF1ab/nsp16108D108TGAtACt11All0
ORF1ab/nsp16108D108IGAtATt11All0
ORF1ab/nsp16108D108GgAtgGt11AY.1000.000046
ORF1ab/nsp16108D108YGatTat11AY.1020.000027
ORF1ab/nsp16108D108NGatAat11AY.1060.000335
ORF1ab/nsp16108D108NGatAat11AY.1130.000142
ORF1ab/nsp16108D108DgaTgaC11AY.1170.000085
ORF1ab/nsp16108D108NGatAat11AY.1170.000085
ORF1ab/nsp16108D108EgaTgaG11AY.1190.000035
ORF1ab/nsp16108D108NGatAat11AY.120.000316
ORF1ab/nsp16108D108GgAtgGt11AY.120.10.000321
ORF1ab/nsp16108D108NGatAat11AY.16.10.00047
ORF1ab/nsp16108D108NGatAat11AY.200.000039
ORF1ab/nsp16108D108YGatTat11AY.230.00007
ORF1ab/nsp16108D108NGatAat11AY.23.10.000417
ORF1ab/nsp16108D108YGatTat11AY.29.10.000221
ORF1ab/nsp16108D108NGatAat11AY.30.00001
ORF1ab/nsp16108D108DgaTgaC11AY.3.10.000085
ORF1ab/nsp16108D108delGAT---11AY.330.000067
ORF1ab/nsp16108D108YGatTat11AY.330.000067
ORF1ab/nsp16108D108DgaTgaC11AY.330.000067
ORF1ab/nsp16108D108delGAT---11AY.360.000148
ORF1ab/nsp16108D108GgAtgGt11AY.4.20.000022
ORF1ab/nsp16108D108YGatTat11AY.4.20.000022
ORF1ab/nsp16108D108DgaTgaC11AY.4.30.000842
ORF1ab/nsp16108D108delGAT---11AY.430.000004
ORF1ab/nsp16108D108DgaTgaC11AY.450.000122
ORF1ab/nsp16108D108HGatCat11AY.50.000021
ORF1ab/nsp16108D108YGatTat11AY.5.30.000337
ORF1ab/nsp16108D108YGatTat11AY.520.000814
ORF1ab/nsp16108D108YGatTat11AY.530.000288
ORF1ab/nsp16108D108DgaTgaC11AY.60.000041
ORF1ab/nsp16108D108DgaTgaC11AY.7.10.000113
ORF1ab/nsp16108D108DgaTgaC11AY.7.20.000559
ORF1ab/nsp16108D108NGatAat11AY.75.10.00018
ORF1ab/nsp16108D108YGatTat11AY.75.10.00018
ORF1ab/nsp16108D108NGatAat11AY.850.000427
ORF1ab/nsp16108D108EgaTgaG11AY.880.000884
ORF1ab/nsp16108D108NGatAat11AY.930.000273
ORF1ab/nsp16108D108YGatTat11AY.940.000443
ORF1ab/nsp16108D108YGatTat11AY.980.000079
ORF1ab/nsp16108D108GgAtgGt11AY.980.000079
ORF1ab/nsp16108D108NGatAat11B0.000128
ORF1ab/nsp16108D108del1Gat-at11B.10.000009
ORF1ab/nsp16108D108EgaTgaA11B.10.000009
ORF1ab/nsp16108D108delGAT---11B.10.000009
ORF1ab/nsp16108D108AgAtgCt11B.1.10.000018
ORF1ab/nsp16108D108delGAT---11B.1.1.1590.004673
ORF1ab/nsp16108D108del1Gat-at11B.1.1.2220.000204
ORF1ab/nsp16108D108AgAtgCt11B.1.1.2370.005405
ORF1ab/nsp16108D108AgAtgCt11B.1.1.3710.010417
ORF1ab/nsp16108D108NGatAat11B.1.1.5190.00004
ORF1ab/nsp16108D108YGatTat11B.1.1.5190.00004
ORF1ab/nsp16108D108EgaTgaG11B.1.1.520.012195
ORF1ab/nsp16108D108NGatAat11B.1.1.5230.001563
ORF1ab/nsp16108D108del1Gat-at11B.1.1.70.000001
ORF1ab/nsp16108D108HGatCat11B.1.1.70.000001
ORF1ab/nsp16108D108SGAtTCt11B.1.1.70.000001
ORF1ab/nsp16108D108delGAT---11B.1.1.700.000341
ORF1ab/nsp16108D108YGatTat11B.1.1050.009615
ORF1ab/nsp16108D108DgaTgaC11B.1.1310.008772
ORF1ab/nsp16108D108NGatAat11B.1.1390.000733
ORF1ab/nsp16108D108AgAtgCt11B.1.1600.000031
ORF1ab/nsp16108D108delGAT---11B.1.160.70.002079
ORF1ab/nsp16108D108delGAT---11B.1.1610.017241
ORF1ab/nsp16108D108NGatAat11B.1.1770.000013
ORF1ab/nsp16108D108del1gaTga-11B.1.1770.000013
ORF1ab/nsp16108D108delGAT---11B.1.177.620.001192
ORF1ab/nsp16108D108YGatTat11B.1.177.730.000566
ORF1ab/nsp16108D108delGAT---11B.1.177.810.000189
ORF1ab/nsp16108D108AgAtgCt11B.1.177.810.000189
ORF1ab/nsp16108D108delGAT---11B.1.177.90.001332
ORF1ab/nsp16108D108VgAtgTt11B.1.20.000009
ORF1ab/nsp16108D108YGatTat11B.1.214.20.0006
ORF1ab/nsp16108D108DgaTgaC11B.1.2210.000071
ORF1ab/nsp16108D108VgAtgTt11B.1.2340.000132
ORF1ab/nsp16108D108YGatTat11B.1.2360.002053
ORF1ab/nsp16108D108NGatAat11B.1.2430.00007
ORF1ab/nsp16108D108delGAT---11B.1.2580.000067
ORF1ab/nsp16108D108delGAT---11B.1.258.110.000396
ORF1ab/nsp16108D108DgaTgaC11B.1.2650.001271
ORF1ab/nsp16108D108del1gaTga-11B.1.3290.000608
ORF1ab/nsp16108D108EgaTgaG11B.1.360.000146
ORF1ab/nsp16108D108YGatTat11B.1.3670.000792
ORF1ab/nsp16108D108EgaTgaG11B.1.3710.001122
ORF1ab/nsp16108D108DgaTgaC11B.1.3960.000706
ORF1ab/nsp16108D108YGatTat11B.1.4000.000429
ORF1ab/nsp16108D108HGatCat11B.1.4000.000429
ORF1ab/nsp16108D108DgaTgaC11B.1.4270.00005
ORF1ab/nsp16108D108DgaTgaC11B.1.4600.017857
ORF1ab/nsp16108D108DgaTgaC11B.1.5250.000113
ORF1ab/nsp16108D108AgAtgCt11B.1.5610.000397
ORF1ab/nsp16108D108EgaTgaG11B.1.5960.000087
ORF1ab/nsp16108D108YGatTat11B.1.5960.000087
ORF1ab/nsp16108D108AgAtgCt11B.1.617.20.000004
ORF1ab/nsp16108D108TGAtACt11B.1.617.20.000004
ORF1ab/nsp16108D108delGAT---11B.1.6200.000946
ORF1ab/nsp16108D108NGatAat11B.1.6210.000089
ORF1ab/nsp16108D108YGatTat11B.1.6230.000536
ORF1ab/nsp16108D108GgAtgGt11C.350.000774
ORF1ab/nsp16108D108HGatCat11D.20.000075
ORF1ab/nsp16108D108AgAtgCt11P.10.000016
ORF1ab/nsp16108D108HGatCat11P.1.10.000318
ORF1ab/nsp16108D108DgaTgaC11P.1.140.000048
ORF1ab/nsp16108D108NGatAat11P.20.000187