CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 102

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16102D102ND6900NnonsynGacAac700970080.99985720962-20964
ORF1ab/nsp16102D102ND6900NnonsynGaCAaT700910.00014267420962-20964
ORF1ab/nsp16102D102DD6900DsyngaCgaT587587120962-20964
ORF1ab/nsp16102D102YD6900YnonsynGacTac492492120962-20964
ORF1ab/nsp16102D102GD6900GnonsyngAcgGc4424400.99547520962-20964
ORF1ab/nsp16102D102GD6900GnonsyngACgGA44210.0022624420962-20964
ORF1ab/nsp16102D102GD6900GnonsyngACgGT44210.0022624420962-20964
ORF1ab/nsp16102D102ED6900EnonsyngaCgaA85830.97647120962-20964
ORF1ab/nsp16102D102ED6900EnonsyngaCgaG8520.023529420962-20964
ORF1ab/nsp16102D102AD6900AnonsyngAcgCc4545120962-20964
ORF1ab/nsp16102D102delD6900deldelGAC---2020120962-20964
ORF1ab/nsp16102D102HD6900HnonsynGacCac77120962-20964
ORF1ab/nsp16102D102KD6900KnonsynGaCAaG22120962-20964
ORF1ab/nsp16102D102SD6900SnonsynGACAGT210.520962-20964
ORF1ab/nsp16102D102SD6900SnonsynGAcAGc210.520962-20964
ORF1ab/nsp16102D102ID6900InonsynGACATT11120962-20964
ORF1ab/nsp16102D102XD6900XnonsynGACTGA11120962-20964

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16102D102NGacAac70087009All0.00134
ORF1ab/nsp16102D102NGaCAaT17009All0
ORF1ab/nsp16102D102NGacAac68916891Q.30.99942
ORF1ab/nsp16102D102DgaCgaT587587All0.000112
ORF1ab/nsp16102D102YGacTac492492All0.000094
ORF1ab/nsp16102D102GgAcgGc440442All0.000084
ORF1ab/nsp16102D102GgACgGA1442All0
ORF1ab/nsp16102D102GgACgGT1442All0
ORF1ab/nsp16102D102GgAcgGc302302AY.1180.01892
ORF1ab/nsp16102D102DgaCgaT168168B.1.1.70.00015
ORF1ab/nsp16102D102YGacTac115115B.1.1.70.000103
ORF1ab/nsp16102D102EgaCgaA8385All0.000016
ORF1ab/nsp16102D102EgaCgaG285All0
ORF1ab/nsp16102D102YGacTac7474AY.40.000115
ORF1ab/nsp16102D102GgAcgGc7373B.1.177.200.110774
ORF1ab/nsp16102D102YGacTac6868B.1.20.000599
ORF1ab/nsp16102D102YGacTac6767B.1.5580.305936
ORF1ab/nsp16102D102AgAcgCc4545All0.000009
ORF1ab/nsp16102D102DgaCgaT4040AY.40.000062
ORF1ab/nsp16102D102EgaCgaA3535AY.9.10.00293
ORF1ab/nsp16102D102DgaCgaT3434AY.430.000151
ORF1ab/nsp16102D102DgaCgaT3333A.2.50.016467
ORF1ab/nsp16102D102DgaCgaT2727B.1.617.20.000102
ORF1ab/nsp16102D102NGacAac2323AY.40.000036
ORF1ab/nsp16102D102YGacTac2323AY.4.50.002472
ORF1ab/nsp16102D102delGAC---2020All0.000004
ORF1ab/nsp16102D102YGacTac2020AY.1030.000124
ORF1ab/nsp16102D102NGacAac2020B.1.177.320.026991
ORF1ab/nsp16102D102DgaCgaT1919AY.250.000114
ORF1ab/nsp16102D102NGacAac1919B.1.1.70.000017
ORF1ab/nsp16102D102DgaCgaT1818AY.1030.000112
ORF1ab/nsp16102D102DgaCgaT1717AY.1100.001916
ORF1ab/nsp16102D102DgaCgaT1717B.1.3510.000505
ORF1ab/nsp16102D102YGacTac1616B.10.000147
ORF1ab/nsp16102D102DgaCgaT1616B.1.1.3060.007014
ORF1ab/nsp16102D102GgAcgGc1414B.1.1.70.000013
ORF1ab/nsp16102D102DgaCgaT1313AY.750.000728
ORF1ab/nsp16102D102EgaCgaA1313B.1.1.70.000012
ORF1ab/nsp16102D102DgaCgaT1212B.1.20.000106
ORF1ab/nsp16102D102DgaCgaT1111AY.440.000067
ORF1ab/nsp16102D102DgaCgaT1111B.10.000101
ORF1ab/nsp16102D102GgAcgGc1111B.1.617.20.000041
ORF1ab/nsp16102D102YGacTac1010AY.98.10.000484
ORF1ab/nsp16102D102DgaCgaT1010B.1.1.3850.044643
ORF1ab/nsp16102D102DgaCgaT1010B.1.4270.000505
ORF1ab/nsp16102D102DgaCgaT99AY.1020.000239
ORF1ab/nsp16102D102AgAcgCc99AY.40.000014
ORF1ab/nsp16102D102DgaCgaT99AY.60.00037
ORF1ab/nsp16102D102YGacTac88AY.46.60.000578
ORF1ab/nsp16102D102AgAcgCc88B.1.5260.000188
ORF1ab/nsp16102D102YGacTac88B.1.617.20.00003
ORF1ab/nsp16102D102HGacCac77All0.000001
ORF1ab/nsp16102D102YGacTac77B.1.3960.00494
ORF1ab/nsp16102D102DgaCgaT66AY.30.00006
ORF1ab/nsp16102D102EgaCgaA66AY.39.10.000238
ORF1ab/nsp16102D102YGacTac66AY.430.000027
ORF1ab/nsp16102D102YGacTac66AY.440.000037
ORF1ab/nsp16102D102AgAcgCc66AY.46.60.000433
ORF1ab/nsp16102D102NGacAac66B.10.000055
ORF1ab/nsp16102D102YGacTac66B.1.3510.000178
ORF1ab/nsp16102D102NGacAac66B.1.4290.000141
ORF1ab/nsp16102D102EgaCgaA55AY.1130.000712
ORF1ab/nsp16102D102DgaCgaT55AY.1170.000423
ORF1ab/nsp16102D102EgaCgaA55AY.250.00003
ORF1ab/nsp16102D102GgAcgGc55AY.30.00005
ORF1ab/nsp16102D102AgAcgCc55AY.370.00158
ORF1ab/nsp16102D102GgAcgGc55AY.430.000022
ORF1ab/nsp16102D102YGacTac55AY.90.000338
ORF1ab/nsp16102D102NGacAac55B.1.10.000091
ORF1ab/nsp16102D102delGAC---55B.1.1.70.000004
ORF1ab/nsp16102D102NGacAac55B.1.2180.025773
ORF1ab/nsp16102D102DgaCgaT55B.1.4290.000118
ORF1ab/nsp16102D102NGacAac340.166667
ORF1ab/nsp16102D102GgAcgGc240.111111
ORF1ab/nsp16102D102GgACgGT140.055556
ORF1ab/nsp16102D102NGaCAaT140.055556
ORF1ab/nsp16102D102GgACgGA140.055556
ORF1ab/nsp16102D102YGacTac44A.2.5.10.019231
ORF1ab/nsp16102D102YGacTac44AY.80.002424
ORF1ab/nsp16102D102AgAcgCc44B.1.1.1920.009238
ORF1ab/nsp16102D102DgaCgaT44B.1.1.3440.043011
ORF1ab/nsp16102D102GgAcgGc44B.1.20.000035
ORF1ab/nsp16102D102NGacAac44B.1.20.000035
ORF1ab/nsp16102D102GgAcgGc44B.1.6280.001409
ORF1ab/nsp16102D102GgAcgGc33AY.1020.00008
ORF1ab/nsp16102D102DgaCgaT33AY.1210.000406
ORF1ab/nsp16102D102EgaCgaA33AY.200.000117
ORF1ab/nsp16102D102DgaCgaT33AY.230.000209
ORF1ab/nsp16102D102YGacTac33AY.250.000018
ORF1ab/nsp16102D102NGacAac33AY.260.000085
ORF1ab/nsp16102D102EgaCgaA33AY.390.000074
ORF1ab/nsp16102D102NGacAac33AY.440.000018
ORF1ab/nsp16102D102DgaCgaT33AY.50.000062
ORF1ab/nsp16102D102DgaCgaT33AY.610.000314
ORF1ab/nsp16102D102EgaCgaA33B.10.000027
ORF1ab/nsp16102D102DgaCgaT33B.1.10.000054
ORF1ab/nsp16102D102HGacCac33B.1.1.70.000003
ORF1ab/nsp16102D102AgAcgCc33B.1.1.70.000003
ORF1ab/nsp16102D102DgaCgaT33B.1.1600.000094
ORF1ab/nsp16102D102YGacTac33B.1.177.860.00055
ORF1ab/nsp16102D102DgaCgaT33B.1.5260.000071
ORF1ab/nsp16102D102AgAcgCc33B.1.617.20.000011
ORF1ab/nsp16102D102delGAC---33P.1.150.000697
ORF1ab/nsp16102D102HGacCac33R.10.00027
ORF1ab/nsp16102D102KGaCAaG220.111111
ORF1ab/nsp16102D102SGACAGT120.055556
ORF1ab/nsp16102D102SGAcAGc120.055556
ORF1ab/nsp16102D102KGaCAaG22All0
ORF1ab/nsp16102D102SGAcAGc12All0
ORF1ab/nsp16102D102SGACAGT12All0
ORF1ab/nsp16102D102DgaCgaT22AY.1000.000092
ORF1ab/nsp16102D102delGAC---22AY.1200.000074
ORF1ab/nsp16102D102YGacTac22AY.1200.000074
ORF1ab/nsp16102D102DgaCgaT22AY.130.000322
ORF1ab/nsp16102D102DgaCgaT22AY.200.000078
ORF1ab/nsp16102D102NGacAac22AY.250.000012
ORF1ab/nsp16102D102DgaCgaT22AY.290.000032
ORF1ab/nsp16102D102YGacTac22AY.360.000296
ORF1ab/nsp16102D102DgaCgaT22AY.39.10.000079
ORF1ab/nsp16102D102EgaCgaA22AY.40.000003
ORF1ab/nsp16102D102DgaCgaT22AY.780.003082
ORF1ab/nsp16102D102YGacTac22AY.930.000546
ORF1ab/nsp16102D102DgaCgaT22AY.980.000158
ORF1ab/nsp16102D102DgaCgaT22B0.000256
ORF1ab/nsp16102D102DgaCgaT22B.1.1.5190.000079
ORF1ab/nsp16102D102NGacAac22B.1.1770.000026
ORF1ab/nsp16102D102GgAcgGc22B.1.2390.002442
ORF1ab/nsp16102D102YGacTac22B.1.4270.000101
ORF1ab/nsp16102D102GgAcgGc22B.1.5230.004902
ORF1ab/nsp16102D102YGacTac22B.1.5760.001813
ORF1ab/nsp16102D102DgaCgaT22B.1.617.10.000258
ORF1ab/nsp16102D102EgaCgaA22B.1.617.20.000008
ORF1ab/nsp16102D102DgaCgaT22B.1.6370.000146
ORF1ab/nsp16102D102DgaCgaT22B.6.60.001778
ORF1ab/nsp16102D102YGacTac22D.20.00015
ORF1ab/nsp16102D102DgaCgaT22D.20.00015
ORF1ab/nsp16102D102NGacAac22P.10.000032
ORF1ab/nsp16102D102DgaCgaT22P.10.000032
ORF1ab/nsp16102D102NGacAac22P.1.100.000539
ORF1ab/nsp16102D102DgaCgaT110.055556
ORF1ab/nsp16102D102EgaCgaA110.055556
ORF1ab/nsp16102D102YGacTac11A0.000387
ORF1ab/nsp16102D102DgaCgaT11A.10.000282
ORF1ab/nsp16102D102EgaCgaG11A.2.40.003367
ORF1ab/nsp16102D102XGACTGA11All0
ORF1ab/nsp16102D102IGACATT11All0
ORF1ab/nsp16102D102YGacTac11AY.1000.000046
ORF1ab/nsp16102D102NGacAac11AY.1030.000006
ORF1ab/nsp16102D102AgAcgCc11AY.1030.000006
ORF1ab/nsp16102D102GgAcgGc11AY.1040.001984
ORF1ab/nsp16102D102DgaCgaT11AY.116.10.000311
ORF1ab/nsp16102D102DgaCgaT11AY.1180.000063
ORF1ab/nsp16102D102DgaCgaT11AY.1200.000037
ORF1ab/nsp16102D102YGacTac11AY.1210.000135
ORF1ab/nsp16102D102EgaCgaG11AY.130.000161
ORF1ab/nsp16102D102YGacTac11AY.140.000088
ORF1ab/nsp16102D102YGacTac11AY.170.008197
ORF1ab/nsp16102D102AgAcgCc11AY.200.000039
ORF1ab/nsp16102D102NGacAac11AY.240.000431
ORF1ab/nsp16102D102HGacCac11AY.250.000006
ORF1ab/nsp16102D102delGAC---11AY.250.000006
ORF1ab/nsp16102D102YGacTac11AY.30.00001
ORF1ab/nsp16102D102DgaCgaT11AY.320.000532
ORF1ab/nsp16102D102delGAC---11AY.330.000067
ORF1ab/nsp16102D102YGacTac11AY.330.000067
ORF1ab/nsp16102D102GgAcgGc11AY.390.000025
ORF1ab/nsp16102D102YGacTac11AY.390.000025
ORF1ab/nsp16102D102DgaCgaT11AY.390.000025
ORF1ab/nsp16102D102GgAcgGc11AY.40.000002
ORF1ab/nsp16102D102delGAC---11AY.4.50.000107
ORF1ab/nsp16102D102YGacTac11AY.410.000294
ORF1ab/nsp16102D102YGacTac11AY.420.00004
ORF1ab/nsp16102D102DgaCgaT11AY.420.00004
ORF1ab/nsp16102D102AgAcgCc11AY.430.000004
ORF1ab/nsp16102D102EgaCgaA11AY.430.000004
ORF1ab/nsp16102D102DgaCgaT11AY.450.000122
ORF1ab/nsp16102D102DgaCgaT11AY.460.000104
ORF1ab/nsp16102D102IGACATT11AY.46.20.000635
ORF1ab/nsp16102D102DgaCgaT11AY.46.50.000198
ORF1ab/nsp16102D102DgaCgaT11AY.46.60.000072
ORF1ab/nsp16102D102DgaCgaT11AY.470.000031
ORF1ab/nsp16102D102EgaCgaA11AY.470.000031
ORF1ab/nsp16102D102YGacTac11AY.50.000021
ORF1ab/nsp16102D102DgaCgaT11AY.5.40.000277
ORF1ab/nsp16102D102YGacTac11AY.520.000814
ORF1ab/nsp16102D102DgaCgaT11AY.530.000288
ORF1ab/nsp16102D102YGacTac11AY.580.000907
ORF1ab/nsp16102D102NGacAac11AY.7.10.000113
ORF1ab/nsp16102D102EgaCgaA11AY.700.000209
ORF1ab/nsp16102D102DgaCgaT11AY.710.000475
ORF1ab/nsp16102D102YGacTac11AY.870.000833
ORF1ab/nsp16102D102AgAcgCc11AY.930.000273
ORF1ab/nsp16102D102GgAcgGc11AY.99.20.000092
ORF1ab/nsp16102D102AgAcgCc11AY.99.20.000092
ORF1ab/nsp16102D102NGacAac11B0.000128
ORF1ab/nsp16102D102YGacTac11B0.000128
ORF1ab/nsp16102D102GgAcgGc11B.10.000009
ORF1ab/nsp16102D102delGAC---11B.10.000009
ORF1ab/nsp16102D102GgAcgGc11B.1.10.000018
ORF1ab/nsp16102D102NGacAac11B.1.1.1590.004673
ORF1ab/nsp16102D102DgaCgaT11B.1.1.1690.018182
ORF1ab/nsp16102D102DgaCgaT11B.1.1.2050.003717
ORF1ab/nsp16102D102DgaCgaT11B.1.1.250.000569
ORF1ab/nsp16102D102GgAcgGc11B.1.1.250.000569
ORF1ab/nsp16102D102EgaCgaA11B.1.1.280.000311
ORF1ab/nsp16102D102DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp16102D102YGacTac11B.1.1.3340.016393
ORF1ab/nsp16102D102DgaCgaT11B.1.1.3860.066667
ORF1ab/nsp16102D102NGacAac11B.1.1.4160.000905
ORF1ab/nsp16102D102YGacTac11B.1.1.4340.000349
ORF1ab/nsp16102D102NGacAac11B.1.1.4670.019231
ORF1ab/nsp16102D102DgaCgaT11B.1.1.5180.006329
ORF1ab/nsp16102D102NGacAac11B.1.1.5190.00004
ORF1ab/nsp16102D102YGacTac11B.1.1.5190.00004
ORF1ab/nsp16102D102delGAC---11B.1.1610.017241
ORF1ab/nsp16102D102YGacTac11B.1.1690.014925
ORF1ab/nsp16102D102DgaCgaT11B.1.1770.000013
ORF1ab/nsp16102D102DgaCgaT11B.1.177.120.000152
ORF1ab/nsp16102D102delGAC---11B.1.177.620.001192
ORF1ab/nsp16102D102DgaCgaT11B.1.177.620.001192
ORF1ab/nsp16102D102YGacTac11B.1.177.770.000726
ORF1ab/nsp16102D102DgaCgaT11B.1.2060.000816
ORF1ab/nsp16102D102DgaCgaT11B.1.2320.000537
ORF1ab/nsp16102D102DgaCgaT11B.1.2430.00007
ORF1ab/nsp16102D102YGacTac11B.1.2470.014925
ORF1ab/nsp16102D102delGAC---11B.1.2580.000067
ORF1ab/nsp16102D102DgaCgaT11B.1.258.110.000396
ORF1ab/nsp16102D102YGacTac11B.1.3010.005917
ORF1ab/nsp16102D102DgaCgaT11B.1.350.008475
ORF1ab/nsp16102D102NGacAac11B.1.3510.00003
ORF1ab/nsp16102D102DgaCgaT11B.1.3560.001727
ORF1ab/nsp16102D102NGacAac11B.1.3560.001727
ORF1ab/nsp16102D102GgAcgGc11B.1.360.000146
ORF1ab/nsp16102D102DgaCgaT11B.1.36.10.00114
ORF1ab/nsp16102D102DgaCgaT11B.1.36.260.002857
ORF1ab/nsp16102D102EgaCgaA11B.1.36.360.000602
ORF1ab/nsp16102D102AgAcgCc11B.1.3970.004854
ORF1ab/nsp16102D102DgaCgaT11B.1.4110.003704
ORF1ab/nsp16102D102GgAcgGc11B.1.4290.000024
ORF1ab/nsp16102D102YGacTac11B.1.4320.011236
ORF1ab/nsp16102D102DgaCgaT11B.1.4560.003268
ORF1ab/nsp16102D102DgaCgaT11B.1.4690.00361
ORF1ab/nsp16102D102DgaCgaT11B.1.5250.000113
ORF1ab/nsp16102D102DgaCgaT11B.1.5640.000426
ORF1ab/nsp16102D102DgaCgaT11B.1.5770.000687
ORF1ab/nsp16102D102YGacTac11B.1.5960.000087
ORF1ab/nsp16102D102DgaCgaT11B.1.5960.000087
ORF1ab/nsp16102D102YGacTac11B.1.5990.00365
ORF1ab/nsp16102D102DgaCgaT11B.1.6090.000479
ORF1ab/nsp16102D102NGacAac11B.1.617.20.000004
ORF1ab/nsp16102D102XGACTGA11B.1.617.20.000004
ORF1ab/nsp16102D102delGAC---11B.1.6200.000946
ORF1ab/nsp16102D102YGacTac11B.1.6230.000536
ORF1ab/nsp16102D102GgAcgGc11B.1.6320.006711
ORF1ab/nsp16102D102GgAcgGc11B.1.6370.000073
ORF1ab/nsp16102D102delGAC---11B.340.013699
ORF1ab/nsp16102D102YGacTac11B.60.00091
ORF1ab/nsp16102D102DgaCgaT11C.370.000116
ORF1ab/nsp16102D102GgAcgGc11C.370.000116
ORF1ab/nsp16102D102GgAcgGc11P.1.120.000484
ORF1ab/nsp16102D102DgaCgaT11P.1.140.000048
ORF1ab/nsp16102D102DgaCgaT11Q.10.000126
ORF1ab/nsp16102D102AgAcgCc11Q.20.000613
ORF1ab/nsp16102D102NGacAac11Q.40.000455
ORF1ab/nsp16102D102delGAC---11U.30.003861