CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 102 | D102N | D6900N | nonsyn | Gac | Aac | 7009 | 7008 | 0.999857 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102N | D6900N | nonsyn | GaC | AaT | 7009 | 1 | 0.000142674 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102D | D6900D | syn | gaC | gaT | 587 | 587 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102Y | D6900Y | nonsyn | Gac | Tac | 492 | 492 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102G | D6900G | nonsyn | gAc | gGc | 442 | 440 | 0.995475 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102G | D6900G | nonsyn | gAC | gGA | 442 | 1 | 0.00226244 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102G | D6900G | nonsyn | gAC | gGT | 442 | 1 | 0.00226244 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102E | D6900E | nonsyn | gaC | gaA | 85 | 83 | 0.976471 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102E | D6900E | nonsyn | gaC | gaG | 85 | 2 | 0.0235294 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102A | D6900A | nonsyn | gAc | gCc | 45 | 45 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102del | D6900del | del | GAC | --- | 20 | 20 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102H | D6900H | nonsyn | Gac | Cac | 7 | 7 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102K | D6900K | nonsyn | GaC | AaG | 2 | 2 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102S | D6900S | nonsyn | GAC | AGT | 2 | 1 | 0.5 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102S | D6900S | nonsyn | GAc | AGc | 2 | 1 | 0.5 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102I | D6900I | nonsyn | GAC | ATT | 1 | 1 | 1 | 20962-20964 |
ORF1ab/nsp16 | 102 | D102X | D6900X | nonsyn | GAC | TGA | 1 | 1 | 1 | 20962-20964 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 7008 | 7009 | All | 0.00134 |
ORF1ab/nsp16 | 102 | D102N | GaC | AaT | 1 | 7009 | All | 0 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 6891 | 6891 | Q.3 | 0.99942 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 587 | 587 | All | 0.000112 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 492 | 492 | All | 0.000094 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 440 | 442 | All | 0.000084 |
ORF1ab/nsp16 | 102 | D102G | gAC | gGA | 1 | 442 | All | 0 |
ORF1ab/nsp16 | 102 | D102G | gAC | gGT | 1 | 442 | All | 0 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 302 | 302 | AY.118 | 0.01892 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 168 | 168 | B.1.1.7 | 0.00015 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 115 | 115 | B.1.1.7 | 0.000103 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 83 | 85 | All | 0.000016 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaG | 2 | 85 | All | 0 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 74 | 74 | AY.4 | 0.000115 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 73 | 73 | B.1.177.20 | 0.110774 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 68 | 68 | B.1.2 | 0.000599 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 67 | 67 | B.1.558 | 0.305936 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 45 | 45 | All | 0.000009 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 35 | 35 | AY.9.1 | 0.00293 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 34 | 34 | AY.43 | 0.000151 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 33 | 33 | A.2.5 | 0.016467 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 23 | 23 | AY.4.5 | 0.002472 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 20 | 20 | All | 0.000004 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 20 | 20 | AY.103 | 0.000124 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 20 | 20 | B.1.177.32 | 0.026991 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 17 | 17 | AY.110 | 0.001916 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 16 | 16 | B.1.1.306 | 0.007014 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 10 | 10 | B.1.1.385 | 0.044643 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp16 | 102 | D102H | Gac | Cac | 7 | 7 | All | 0.000001 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 7 | 7 | B.1.396 | 0.00494 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 5 | 5 | B.1.218 | 0.025773 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 3 | 4 | 0.166667 | |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 2 | 4 | 0.111111 | |
ORF1ab/nsp16 | 102 | D102G | gAC | gGT | 1 | 4 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102N | GaC | AaT | 1 | 4 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102G | gAC | gGA | 1 | 4 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 4 | 4 | A.2.5.1 | 0.019231 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 4 | 4 | B.1.1.192 | 0.009238 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 4 | 4 | B.1.1.344 | 0.043011 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 102 | D102H | Gac | Cac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 102 | D102H | Gac | Cac | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp16 | 102 | D102K | GaC | AaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 102 | D102S | GAC | AGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102S | GAc | AGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102K | GaC | AaG | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 102 | D102S | GAc | AGc | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 102 | D102S | GAC | AGT | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaG | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 102 | D102X | GAC | TGA | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 102 | D102I | GAC | ATT | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaG | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 102 | D102H | Gac | Cac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 102 | D102I | GAC | ATT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.386 | 0.066667 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp16 | 102 | D102E | gaC | gaA | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 102 | D102X | GAC | TGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp16 | 102 | D102Y | Gac | Tac | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 102 | D102G | gAc | gGc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 102 | D102A | gAc | gCc | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp16 | 102 | D102N | Gac | Aac | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp16 | 102 | D102del | GAC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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