CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 1 | S1S | S6799S | syn | tcT | tcC | 17353 | 17333 | 0.998847 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1S | S6799S | syn | tcT | tcA | 17353 | 14 | 0.000806777 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1S | S6799S | syn | tcT | tcG | 17353 | 5 | 0.000288135 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1S | S6799S | syn | TCt | AGt | 17353 | 1 | 0.0000576269 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1A | S6799A | nonsyn | Tct | Gct | 88 | 88 | 1 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1T | S6799T | nonsyn | Tct | Act | 63 | 62 | 0.984127 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1T | S6799T | nonsyn | TcT | AcC | 63 | 1 | 0.015873 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1del | S6799del | del | TCT | --- | 55 | 55 | 1 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1del1 | S6799del1 | del | Tct | -ct | 49 | 46 | 0.938776 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1del1 | S6799del1 | del | TcT | -cC | 49 | 1 | 0.0204082 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1del1 | S6799del1 | del | tcT | tc- | 49 | 1 | 0.0204082 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1del1 | S6799del1 | del | tCt | t-t | 49 | 1 | 0.0204082 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1F | S6799F | nonsyn | tCt | tTt | 28 | 26 | 0.928571 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1F | S6799F | nonsyn | tCT | tTC | 28 | 2 | 0.0714286 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1Y | S6799Y | nonsyn | tCt | tAt | 8 | 8 | 1 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1P | S6799P | nonsyn | Tct | Cct | 6 | 6 | 1 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1L | S6799L | nonsyn | tCT | tTA | 1 | 1 | 1 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1C | S6799C | nonsyn | tCt | tGt | 1 | 1 | 1 | 20659-20661 |
ORF1ab/nsp16 | 1 | S1D | S6799D | nonsyn | TCT | GAC | 1 | 1 | 1 | 20659-20661 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 17333 | 17353 | All | 0.003315 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 14 | 17353 | All | 0.000003 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcG | 5 | 17353 | All | 0.000001 |
ORF1ab/nsp16 | 1 | S1S | TCt | AGt | 1 | 17353 | All | 0 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 6566 | 6566 | B.1.177.12 | 0.996056 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 4573 | 4573 | B.1.177 | 0.060215 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1738 | 1738 | B.1.177.44 | 0.90192 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1344 | 1344 | B.1.177.35 | 0.928818 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1074 | 1074 | B.1.177.42 | 0.960644 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 643 | 643 | B.1.177.43 | 0.949778 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 398 | 398 | B.1.177.41 | 0.995 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 203 | 203 | B.1 | 0.001859 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 191 | 191 | B.1.177.40 | 0.984536 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 95 | 95 | B.1.177.38 | 0.989583 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 88 | 88 | All | 0.000017 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 62 | 63 | All | 0.000012 |
ORF1ab/nsp16 | 1 | S1T | TcT | AcC | 1 | 63 | All | 0 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 62 | 62 | B.1.177.36 | 1 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 62 | 62 | B.1.177.39 | 0.953846 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 55 | 55 | All | 0.000011 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 46 | 49 | All | 0.000009 |
ORF1ab/nsp16 | 1 | S1del1 | tcT | tc- | 1 | 49 | All | 0 |
ORF1ab/nsp16 | 1 | S1del1 | tCt | t-t | 1 | 49 | All | 0 |
ORF1ab/nsp16 | 1 | S1del1 | TcT | -cC | 1 | 49 | All | 0 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 46 | 46 | B.1.160.30 | 0.136905 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 42 | 42 | B.1.221 | 0.002983 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 36 | 37 | B.1.1.7 | 0.000032 |
ORF1ab/nsp16 | 1 | S1del1 | tCt | t-t | 1 | 37 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 32 | 33 | B.1.160 | 0.000998 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 1 | 33 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 33 | 33 | B.1.177.37 | 0.891892 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 26 | 28 | All | 0.000005 |
ORF1ab/nsp16 | 1 | S1F | tCT | tTC | 2 | 28 | All | 0 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 19 | 19 | B.1.36 | 0.002772 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 12 | 17 | B.1.258 | 0.000799 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 5 | 17 | B.1.258 | 0.000333 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 15 | 15 | B.1.177.31 | 0.172414 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 14 | 14 | AY.14 | 0.001232 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 7 | 11 | B.1.1.7 | 0.000006 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 2 | 11 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 1 | S1S | TCt | AGt | 1 | 11 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcG | 1 | 11 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 10 | 10 | B.1.177.6 | 0.009766 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 7 | 8 | AY.4 | 0.000011 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 8 | 8 | AY.88 | 0.007073 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 7 | 7 | B.1.1.39 | 0.003568 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 7 | 7 | B.1.177.9 | 0.009321 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 6 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 6 | 6 | B | 0.000767 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 6 | 6 | B.1.160.32 | 0.025751 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 5 | 5 | B.1.416.1 | 0.007812 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 3 | 3 | A | 0.001161 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 3 | 3 | B.1.177.45 | 0.001144 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 1 | S1F | tCT | tTC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp16 | 1 | S1F | tCT | tTC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 1 | S1L | tCT | tTA | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 1 | S1C | tCt | tGt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 1 | S1D | TCT | GAC | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 1 | S1del1 | tcT | tc- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 1 | S1D | TCT | GAC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 1 | S1T | TcT | AcC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcG | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp16 | 1 | S1del1 | TcT | -cC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp16 | 1 | S1C | tCt | tGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 1 | S1A | Tct | Gct | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp16 | 1 | S1L | tCT | tTA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 1 | S1Y | tCt | tAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 1 | S1T | Tct | Act | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp16 | 1 | S1P | Tct | Cct | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp16 | 1 | S1F | tCt | tTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 1 | S1del | TCT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp16 | 1 | S1del1 | Tct | -ct | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp16 | 1 | S1S | tcT | tcC | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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