CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp161S1SS6799SsyntcTtcC17353173330.99884720659-20661
ORF1ab/nsp161S1SS6799SsyntcTtcA17353140.00080677720659-20661
ORF1ab/nsp161S1SS6799SsyntcTtcG1735350.00028813520659-20661
ORF1ab/nsp161S1SS6799SsynTCtAGt1735310.000057626920659-20661
ORF1ab/nsp161S1AS6799AnonsynTctGct8888120659-20661
ORF1ab/nsp161S1TS6799TnonsynTctAct63620.98412720659-20661
ORF1ab/nsp161S1TS6799TnonsynTcTAcC6310.01587320659-20661
ORF1ab/nsp161S1delS6799deldelTCT---5555120659-20661
ORF1ab/nsp161S1del1S6799del1delTct-ct49460.93877620659-20661
ORF1ab/nsp161S1del1S6799del1delTcT-cC4910.020408220659-20661
ORF1ab/nsp161S1del1S6799del1deltcTtc-4910.020408220659-20661
ORF1ab/nsp161S1del1S6799del1deltCtt-t4910.020408220659-20661
ORF1ab/nsp161S1FS6799FnonsyntCttTt28260.92857120659-20661
ORF1ab/nsp161S1FS6799FnonsyntCTtTC2820.071428620659-20661
ORF1ab/nsp161S1YS6799YnonsyntCttAt88120659-20661
ORF1ab/nsp161S1PS6799PnonsynTctCct66120659-20661
ORF1ab/nsp161S1LS6799LnonsyntCTtTA11120659-20661
ORF1ab/nsp161S1CS6799CnonsyntCttGt11120659-20661
ORF1ab/nsp161S1DS6799DnonsynTCTGAC11120659-20661

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp161S1StcTtcC1733317353All0.003315
ORF1ab/nsp161S1StcTtcA1417353All0.000003
ORF1ab/nsp161S1StcTtcG517353All0.000001
ORF1ab/nsp161S1STCtAGt117353All0
ORF1ab/nsp161S1StcTtcC65666566B.1.177.120.996056
ORF1ab/nsp161S1StcTtcC45734573B.1.1770.060215
ORF1ab/nsp161S1StcTtcC17381738B.1.177.440.90192
ORF1ab/nsp161S1StcTtcC13441344B.1.177.350.928818
ORF1ab/nsp161S1StcTtcC10741074B.1.177.420.960644
ORF1ab/nsp161S1StcTtcC643643B.1.177.430.949778
ORF1ab/nsp161S1StcTtcC398398B.1.177.410.995
ORF1ab/nsp161S1StcTtcC203203B.10.001859
ORF1ab/nsp161S1StcTtcC191191B.1.177.400.984536
ORF1ab/nsp161S1StcTtcC9595B.1.177.380.989583
ORF1ab/nsp161S1ATctGct8888All0.000017
ORF1ab/nsp161S1TTctAct6263All0.000012
ORF1ab/nsp161S1TTcTAcC163All0
ORF1ab/nsp161S1StcTtcC6262B.1.177.361
ORF1ab/nsp161S1StcTtcC6262B.1.177.390.953846
ORF1ab/nsp161S1delTCT---5555All0.000011
ORF1ab/nsp161S1del1Tct-ct4649All0.000009
ORF1ab/nsp161S1del1tcTtc-149All0
ORF1ab/nsp161S1del1tCtt-t149All0
ORF1ab/nsp161S1del1TcT-cC149All0
ORF1ab/nsp161S1StcTtcC4646B.1.160.300.136905
ORF1ab/nsp161S1StcTtcC4242B.1.2210.002983
ORF1ab/nsp161S1del1Tct-ct3637B.1.1.70.000032
ORF1ab/nsp161S1del1tCtt-t137B.1.1.70.000001
ORF1ab/nsp161S1StcTtcC3233B.1.1600.000998
ORF1ab/nsp161S1StcTtcA133B.1.1600.000031
ORF1ab/nsp161S1StcTtcC3333B.1.177.370.891892
ORF1ab/nsp161S1FtCttTt2628All0.000005
ORF1ab/nsp161S1FtCTtTC228All0
ORF1ab/nsp161S1ATctGct2525AY.40.000039
ORF1ab/nsp161S1TTctAct2525AY.40.000039
ORF1ab/nsp161S1ATctGct2424B.1.1.70.000021
ORF1ab/nsp161S1TTctAct1919AY.4.50.002042
ORF1ab/nsp161S1delTCT---1919B.1.1.70.000017
ORF1ab/nsp161S1StcTtcC1919B.1.360.002772
ORF1ab/nsp161S1StcTtcC1717B.1.10.000308
ORF1ab/nsp161S1StcTtcC1217B.1.2580.000799
ORF1ab/nsp161S1StcTtcA517B.1.2580.000333
ORF1ab/nsp161S1StcTtcC1515B.1.177.310.172414
ORF1ab/nsp161S1StcTtcC1414AY.140.001232
ORF1ab/nsp161S1StcTtcC711B.1.1.70.000006
ORF1ab/nsp161S1StcTtcA211B.1.1.70.000002
ORF1ab/nsp161S1STCtAGt111B.1.1.70.000001
ORF1ab/nsp161S1StcTtcG111B.1.1.70.000001
ORF1ab/nsp161S1StcTtcC1010B.1.177.60.009766
ORF1ab/nsp161S1delTCT---880.444444
ORF1ab/nsp161S1YtCttAt88All0.000002
ORF1ab/nsp161S1StcTtcC88AY.200.000311
ORF1ab/nsp161S1StcTtcC78AY.40.000011
ORF1ab/nsp161S1StcTtcA18AY.40.000002
ORF1ab/nsp161S1StcTtcC88AY.880.007073
ORF1ab/nsp161S1StcTtcC88B.1.4290.000188
ORF1ab/nsp161S1StcTtcC77B.1.1.390.003568
ORF1ab/nsp161S1StcTtcC77B.1.177.90.009321
ORF1ab/nsp161S1ATctGct77B.1.617.20.000026
ORF1ab/nsp161S1PTctCct66All0.000001
ORF1ab/nsp161S1StcTtcC66B0.000767
ORF1ab/nsp161S1StcTtcC66B.1.160.320.025751
ORF1ab/nsp161S1TTctAct55AY.90.000338
ORF1ab/nsp161S1StcTtcC55B.1.416.10.007812
ORF1ab/nsp161S1ATctGct44AY.440.000024
ORF1ab/nsp161S1TTctAct44AY.80.002424
ORF1ab/nsp161S1FtCttTt44B.1.1.70.000004
ORF1ab/nsp161S1StcTtcC44B.1.177.730.002265
ORF1ab/nsp161S1ATctGct33A0.001161
ORF1ab/nsp161S1ATctGct33AY.430.000013
ORF1ab/nsp161S1StcTtcA23AY.430.000009
ORF1ab/nsp161S1StcTtcC13AY.430.000004
ORF1ab/nsp161S1StcTtcC33AY.440.000018
ORF1ab/nsp161S1StcTtcC33B.1.1.700.001023
ORF1ab/nsp161S1StcTtcC33B.1.177.450.001144
ORF1ab/nsp161S1ATctGct33B.1.177.70.000495
ORF1ab/nsp161S1del1Tct-ct33B.1.177.820.001432
ORF1ab/nsp161S1StcTtcC33B.1.177.860.00055
ORF1ab/nsp161S1StcTtcC33B.1.2600.010033
ORF1ab/nsp161S1delTCT---33B.1.617.20.000011
ORF1ab/nsp161S1StcTtcC12AY.1030.000006
ORF1ab/nsp161S1StcTtcA12AY.1030.000006
ORF1ab/nsp161S1TTctAct22AY.1200.000074
ORF1ab/nsp161S1ATctGct22AY.39.10.000079
ORF1ab/nsp161S1delTCT---22AY.4.50.000215
ORF1ab/nsp161S1TTctAct22AY.580.001815
ORF1ab/nsp161S1StcTtcC22AY.840.000875
ORF1ab/nsp161S1YtCttAt22B.10.000018
ORF1ab/nsp161S1ATctGct22B.10.000018
ORF1ab/nsp161S1FtCttTt22B.10.000018
ORF1ab/nsp161S1FtCTtTC12B.1.10.000018
ORF1ab/nsp161S1FtCttTt12B.1.10.000018
ORF1ab/nsp161S1YtCttAt22B.1.1.70.000002
ORF1ab/nsp161S1del1Tct-ct22B.1.1600.000062
ORF1ab/nsp161S1StcTtcC22B.1.160.100.016129
ORF1ab/nsp161S1FtCTtTC12B.1.1770.000013
ORF1ab/nsp161S1FtCttTt12B.1.1770.000013
ORF1ab/nsp161S1StcTtcC22B.1.177.520.003515
ORF1ab/nsp161S1StcTtcC22B.1.177.570.000562
ORF1ab/nsp161S1StcTtcC22B.1.20.000018
ORF1ab/nsp161S1StcTtcC22B.1.2220.003384
ORF1ab/nsp161S1FtCttTt22B.1.2340.000264
ORF1ab/nsp161S1StcTtcC22B.1.2400.000431
ORF1ab/nsp161S1del1Tct-ct22B.1.3510.000059
ORF1ab/nsp161S1StcTtcC22B.1.6090.000959
ORF1ab/nsp161S1StcTtcC22B.1.617.20.000008
ORF1ab/nsp161S1FtCttTt22D.20.00015
ORF1ab/nsp161S1ATctGct22P.10.000032
ORF1ab/nsp161S1FtCttTt11A.20.000662
ORF1ab/nsp161S1LtCTtTA11All0
ORF1ab/nsp161S1CtCttGt11All0
ORF1ab/nsp161S1DTCTGAC11All0
ORF1ab/nsp161S1ATctGct11AY.1030.000006
ORF1ab/nsp161S1del1tcTtc-11AY.1130.000142
ORF1ab/nsp161S1PTctCct11AY.1170.000085
ORF1ab/nsp161S1StcTtcG11AY.1200.000037
ORF1ab/nsp161S1FtCttTt11AY.16.10.00047
ORF1ab/nsp161S1TTctAct11AY.170.008197
ORF1ab/nsp161S1delTCT---11AY.250.000006
ORF1ab/nsp161S1FtCttTt11AY.250.000006
ORF1ab/nsp161S1ATctGct11AY.250.000006
ORF1ab/nsp161S1del1Tct-ct11AY.250.000006
ORF1ab/nsp161S1ATctGct11AY.270.000065
ORF1ab/nsp161S1ATctGct11AY.34.10.00051
ORF1ab/nsp161S1YtCttAt11AY.390.000025
ORF1ab/nsp161S1FtCttTt11AY.40.000002
ORF1ab/nsp161S1delTCT---11AY.40.000002
ORF1ab/nsp161S1YtCttAt11AY.40.000002
ORF1ab/nsp161S1StcTtcA11AY.4.50.000107
ORF1ab/nsp161S1DTCTGAC11AY.430.000004
ORF1ab/nsp161S1delTCT---11AY.440.000006
ORF1ab/nsp161S1FtCttTt11AY.440.000006
ORF1ab/nsp161S1ATctGct11AY.450.000122
ORF1ab/nsp161S1StcTtcG11AY.450.000122
ORF1ab/nsp161S1ATctGct11AY.470.000031
ORF1ab/nsp161S1ATctGct11AY.50.000021
ORF1ab/nsp161S1del1Tct-ct11AY.520.000814
ORF1ab/nsp161S1delTCT---11AY.670.000464
ORF1ab/nsp161S1delTCT---11AY.840.000437
ORF1ab/nsp161S1TTctAct11AY.870.000833
ORF1ab/nsp161S1StcTtcA11AY.9.20.000037
ORF1ab/nsp161S1StcTtcC11AY.940.000443
ORF1ab/nsp161S1FtCttTt11AY.980.000079
ORF1ab/nsp161S1StcTtcC11AY.98.10.000048
ORF1ab/nsp161S1delTCT---11AY.990.001049
ORF1ab/nsp161S1ATctGct11AY.99.10.001553
ORF1ab/nsp161S1YtCttAt11B0.000128
ORF1ab/nsp161S1TTcTAcC11B.10.000009
ORF1ab/nsp161S1delTCT---11B.1.10.000018
ORF1ab/nsp161S1StcTtcC11B.1.1.10.000327
ORF1ab/nsp161S1StcTtcC11B.1.1.1410.002012
ORF1ab/nsp161S1StcTtcC11B.1.1.1700.001247
ORF1ab/nsp161S1delTCT---11B.1.1.1700.001247
ORF1ab/nsp161S1StcTtcC11B.1.1.1890.001513
ORF1ab/nsp161S1ATctGct11B.1.1.330.000421
ORF1ab/nsp161S1StcTtcC11B.1.1.3430.020833
ORF1ab/nsp161S1StcTtcC11B.1.1.370.000193
ORF1ab/nsp161S1StcTtcC11B.1.1.3720.000689
ORF1ab/nsp161S1StcTtcC11B.1.1.5210.005348
ORF1ab/nsp161S1FtCttTt11B.1.1.590.006494
ORF1ab/nsp161S1TTctAct11B.1.1.70.000001
ORF1ab/nsp161S1delTCT---11B.1.1.700.000341
ORF1ab/nsp161S1StcTtcC11B.1.1040.00369
ORF1ab/nsp161S1ATctGct11B.1.1390.000733
ORF1ab/nsp161S1StcTtcC11B.1.160.160.000929
ORF1ab/nsp161S1StcTtcC11B.1.160.260.002421
ORF1ab/nsp161S1StcTtcG11B.1.160.290.004219
ORF1ab/nsp161S1delTCT---11B.1.177.170.000821
ORF1ab/nsp161S1StcTtcC11B.1.177.170.000821
ORF1ab/nsp161S1StcTtcC11B.1.177.210.000076
ORF1ab/nsp161S1StcTtcC11B.1.177.230.003236
ORF1ab/nsp161S1StcTtcC11B.1.177.500.004695
ORF1ab/nsp161S1del1TcT-cC11B.1.177.60.000977
ORF1ab/nsp161S1StcTtcC11B.1.177.650.000665
ORF1ab/nsp161S1delTCT---11B.1.177.730.000566
ORF1ab/nsp161S1StcTtcC11B.1.177.770.000726
ORF1ab/nsp161S1FtCttTt11B.1.177.800.001912
ORF1ab/nsp161S1delTCT---11B.1.177.830.001481
ORF1ab/nsp161S1StcTtcC11B.1.177.870.000728
ORF1ab/nsp161S1delTCT---11B.1.177.870.000728
ORF1ab/nsp161S1StcTtcC11B.1.177.890.02439
ORF1ab/nsp161S1CtCttGt11B.1.20.000009
ORF1ab/nsp161S1FtCttTt11B.1.20.000009
ORF1ab/nsp161S1delTCT---11B.1.20.000009
ORF1ab/nsp161S1ATctGct11B.1.20.000009
ORF1ab/nsp161S1FtCttTt11B.1.2060.000816
ORF1ab/nsp161S1StcTtcC11B.1.214.30.007143
ORF1ab/nsp161S1StcTtcC11B.1.2330.014085
ORF1ab/nsp161S1StcTtcC11B.1.2370.004975
ORF1ab/nsp161S1ATctGct11B.1.2430.00007
ORF1ab/nsp161S1delTCT---11B.1.2580.000067
ORF1ab/nsp161S1StcTtcC11B.1.2840.013158
ORF1ab/nsp161S1FtCttTt11B.1.3360.002439
ORF1ab/nsp161S1PTctCct11B.1.3510.00003
ORF1ab/nsp161S1ATctGct11B.1.36.250.002208
ORF1ab/nsp161S1StcTtcC11B.1.36.90.003215
ORF1ab/nsp161S1LtCTtTA11B.1.4160.001269
ORF1ab/nsp161S1FtCttTt11B.1.4290.000024
ORF1ab/nsp161S1StcTtcC11B.1.4730.019231
ORF1ab/nsp161S1StcTtcC11B.1.5250.000113
ORF1ab/nsp161S1delTCT---11B.1.5250.000113
ORF1ab/nsp161S1PTctCct11B.1.5260.000024
ORF1ab/nsp161S1delTCT---11B.1.5260.000024
ORF1ab/nsp161S1StcTtcG11B.1.5260.000024
ORF1ab/nsp161S1StcTtcC11B.1.5330.009615
ORF1ab/nsp161S1StcTtcC11B.1.5610.000397
ORF1ab/nsp161S1delTCT---11B.1.5610.000397
ORF1ab/nsp161S1delTCT---11B.1.5960.000087
ORF1ab/nsp161S1TTctAct11B.1.5990.00365
ORF1ab/nsp161S1StcTtcC11B.1.617.10.000129
ORF1ab/nsp161S1YtCttAt11B.1.617.20.000004
ORF1ab/nsp161S1TTctAct11B.1.617.20.000004
ORF1ab/nsp161S1PTctCct11B.1.617.20.000004
ORF1ab/nsp161S1delTCT---11B.1.6200.000946
ORF1ab/nsp161S1StcTtcC11B.1.780.008547
ORF1ab/nsp161S1FtCttTt11B.200.023256
ORF1ab/nsp161S1PTctCct11B.30.000831
ORF1ab/nsp161S1delTCT---11B.340.013699
ORF1ab/nsp161S1PTctCct11B.4.50.011905
ORF1ab/nsp161S1FtCttTt11B.60.00091
ORF1ab/nsp161S1StcTtcC11K.10.02381
ORF1ab/nsp161S1StcTtcC11P.10.000016
ORF1ab/nsp161S1delTCT---11P.1.150.000232
ORF1ab/nsp161S1delTCT---11P.1.70.000319
ORF1ab/nsp161S1StcTtcC11P.30.001595
ORF1ab/nsp161S1del1Tct-ct11R.10.00009
ORF1ab/nsp161S1StcTtcC11Z.10.00289