CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 88 | Y88Y | Y6540Y | syn | taC | taT | 5594 | 5594 | 1 | 19882-19884 |
Details of the mutation Y88Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5594 | 5594 | All | 0.00107 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1649 | 1649 | B.1.1.7 | 0.001476 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 575 | 575 | AY.4 | 0.000895 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 316 | 316 | B.1.2 | 0.002782 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 234 | 234 | AY.6 | 0.009624 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 177 | 177 | AY.44 | 0.001077 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 155 | 155 | AY.103 | 0.000962 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 153 | 153 | B.1.617.2 | 0.000576 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 141 | 141 | B.1.1.420 | 0.141851 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 125 | 125 | AY.43 | 0.000554 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 104 | 104 | B.1.177.60 | 0.022717 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 92 | 92 | P.1 | 0.001449 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 88 | 88 | B.1 | 0.000806 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 86 | 86 | B.1.177.21 | 0.006576 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 85 | 85 | AY.109 | 0.06287 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 69 | 69 | B.1.1 | 0.001252 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 69 | 69 | B.1.582 | 0.033857 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 61 | 61 | B.1.526 | 0.001434 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 60 | 60 | AY.3 | 0.000597 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 52 | 52 | AY.25 | 0.000313 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 49 | 49 | AY.102 | 0.001299 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 42 | 42 | B.1.277 | 1 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 41 | 41 | AY.26 | 0.001161 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 38 | 38 | AW.1 | 0.115854 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 37 | 37 | C.37 | 0.004294 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 35 | 35 | B.1.351 | 0.00104 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 32 | 32 | AY.119 | 0.00113 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 28 | 28 | B.1.177.7 | 0.004616 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 28 | 28 | B.1.234 | 0.003694 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 27 | 27 | B.1.177 | 0.000356 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 27 | 27 | B.1.36.29 | 0.013968 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 26 | 26 | B.1.160 | 0.000811 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 26 | 26 | B.1.177.44 | 0.013492 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 25 | 25 | B.1.617.1 | 0.003224 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 24 | 24 | R.1 | 0.00216 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 21 | 21 | AY.46 | 0.002186 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 19 | 19 | B.1.621 | 0.001682 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 17 | 17 | B.1.36.17 | 0.008399 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 17 | 17 | B.1.588 | 0.015469 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 16 | 16 | AY.118 | 0.001002 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 16 | 16 | AY.35 | 0.003729 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 16 | 16 | B.1.239 | 0.019536 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 14 | 14 | P.2 | 0.002613 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 11 | 11 | P.1.7 | 0.003512 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 10 | 10 | B.1.517 | 0.00427 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 9 | 9 | B.1.1.317 | 0.003705 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | AY.83 | 0.013793 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | B.1.1.207 | 0.009456 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | B.1.1.219 | 0.04 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 8 | 8 | B.1.232 | 0.004299 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | AY.3.1 | 0.000597 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | AY.62 | 0.002614 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | AY.63 | 0.002321 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | B.1.1.389 | 0.036364 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 6 | 6 | P.1.13 | 0.005391 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5 | 5 | AY.69 | 0.000933 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | B.1.108 | 0.023256 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | B.1.243.1 | 0.088889 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | B.1.1.88 | 0.214286 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | B.1.36.35 | 0.007812 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | B.1.602 | 0.019608 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | B.1.632 | 0.020134 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | B.4.5 | 0.02381 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | A.30 | 0.142857 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AM.1 | 0.111111 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.422 | 0.045455 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp15A1-B | 88 | Y88Y | taC | taT | 1 | 1 | U.2 | 0.008772 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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