CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 193 | Y193Y | Y6645Y | syn | taC | taT | 13380 | 13380 | 1 | 20197-20199 |
Details of the mutation Y193Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 13380 | 13380 | All | 0.002559 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 11384 | 11384 | AY.3.1 | 0.970586 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 283 | 283 | B.1.1.7 | 0.000253 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 186 | 186 | B.1.523 | 0.455882 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 161 | 161 | A.23.1 | 0.11338 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 124 | 124 | AY.25 | 0.000746 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 115 | 115 | AY.92 | 0.033036 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 111 | 111 | B.1.617.2 | 0.000418 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 96 | 96 | AY.3 | 0.000955 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 62 | 62 | AY.44 | 0.000377 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 57 | 57 | AY.4 | 0.000089 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 56 | 56 | B.1.637 | 0.004092 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 55 | 55 | AY.84 | 0.024059 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 53 | 53 | AY.117 | 0.004479 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 38 | 38 | AY.102 | 0.001008 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 31 | 31 | P.1.7 | 0.009898 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 30 | 30 | AY.103 | 0.000186 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 19 | 19 | AY.105 | 0.012219 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 17 | 17 | AY.5 | 0.000351 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 12 | 12 | AY.79 | 0.014528 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 11 | 11 | AY.55 | 0.010092 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 10 | 10 | B.1.177.73 | 0.005663 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 9 | 9 | AY.111 | 0.001648 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 9 | 9 | B.1.1.221 | 0.090909 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | AY.5.3 | 0.002699 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 6 | 6 | AY.99 | 0.006296 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 5 | 5 | AY.86 | 0.004149 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 5 | 5 | B.1.1.157 | 0.004566 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 4 | 4 | AY.82 | 0.005427 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | B.1.544 | 0.012048 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 193 | Y193Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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