CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = V320V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B320V320VV6772VsyngtGgtT406234740.85524420578-20580
ORF1ab/nsp15A1-B320V320VV6772VsyngtGgtA40624940.12161520578-20580
ORF1ab/nsp15A1-B320V320VV6772VsyngtGgtC4062940.023141320578-20580

Details of the mutation V320V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B320V320VgtGgtT34744062All0.000664
ORF1ab/nsp15A1-B320V320VgtGgtA4944062All0.000094
ORF1ab/nsp15A1-B320V320VgtGgtC944062All0.000018
ORF1ab/nsp15A1-B320V320VgtGgtT474939AY.40.000738
ORF1ab/nsp15A1-B320V320VgtGgtA431939AY.40.000671
ORF1ab/nsp15A1-B320V320VgtGgtC34939AY.40.000053
ORF1ab/nsp15A1-B320V320VgtGgtT357375B.1.1.70.00032
ORF1ab/nsp15A1-B320V320VgtGgtA10375B.1.1.70.000009
ORF1ab/nsp15A1-B320V320VgtGgtC8375B.1.1.70.000007
ORF1ab/nsp15A1-B320V320VgtGgtT178187AY.430.000789
ORF1ab/nsp15A1-B320V320VgtGgtA9187AY.430.00004
ORF1ab/nsp15A1-B320V320VgtGgtT177181B.1.10.003211
ORF1ab/nsp15A1-B320V320VgtGgtC4181B.1.10.000073
ORF1ab/nsp15A1-B320V320VgtGgtT160160B.1.1.2270.695652
ORF1ab/nsp15A1-B320V320VgtGgtT137144AY.50.002829
ORF1ab/nsp15A1-B320V320VgtGgtC6144AY.50.000124
ORF1ab/nsp15A1-B320V320VgtGgtA1144AY.50.000021
ORF1ab/nsp15A1-B320V320VgtGgtT132136B.10.001209
ORF1ab/nsp15A1-B320V320VgtGgtA2136B.10.000018
ORF1ab/nsp15A1-B320V320VgtGgtC2136B.10.000018
ORF1ab/nsp15A1-B320V320VgtGgtT122122AY.260.003454
ORF1ab/nsp15A1-B320V320VgtGgtT117120B.1.20.00103
ORF1ab/nsp15A1-B320V320VgtGgtA2120B.1.20.000018
ORF1ab/nsp15A1-B320V320VgtGgtC1120B.1.20.000009
ORF1ab/nsp15A1-B320V320VgtGgtT94116AY.30.000935
ORF1ab/nsp15A1-B320V320VgtGgtC22116AY.30.000219
ORF1ab/nsp15A1-B320V320VgtGgtT107108B.1.617.20.000403
ORF1ab/nsp15A1-B320V320VgtGgtC1108B.1.617.20.000004
ORF1ab/nsp15A1-B320V320VgtGgtT105107AY.250.000632
ORF1ab/nsp15A1-B320V320VgtGgtA2107AY.250.000012
ORF1ab/nsp15A1-B320V320VgtGgtT102102B.1.3380.87931
ORF1ab/nsp15A1-B320V320VgtGgtT6565B.1.1600.002027
ORF1ab/nsp15A1-B320V320VgtGgtT6464AY.1030.000397
ORF1ab/nsp15A1-B320V320VgtGgtT6163B.1.1.3060.026743
ORF1ab/nsp15A1-B320V320VgtGgtC263B.1.1.3060.000877
ORF1ab/nsp15A1-B320V320VgtGgtT6162P.10.000961
ORF1ab/nsp15A1-B320V320VgtGgtC162P.10.000016
ORF1ab/nsp15A1-B320V320VgtGgtT5858B.1.1.3381
ORF1ab/nsp15A1-B320V320VgtGgtT5355AY.440.000323
ORF1ab/nsp15A1-B320V320VgtGgtA255AY.440.000012
ORF1ab/nsp15A1-B320V320VgtGgtT5050B.1.3510.001486
ORF1ab/nsp15A1-B320V320VgtGgtT4848B.1.1.5190.001906
ORF1ab/nsp15A1-B320V320VgtGgtT3535B.1.2210.002486
ORF1ab/nsp15A1-B320V320VgtGgtT3333B.1.2340.004354
ORF1ab/nsp15A1-B320V320VgtGgtT3232AY.980.002528
ORF1ab/nsp15A1-B320V320VgtGgtT2929AY.270.001877
ORF1ab/nsp15A1-B320V320VgtGgtT2728AY.1020.000716
ORF1ab/nsp15A1-B320V320VgtGgtC128AY.1020.000027
ORF1ab/nsp15A1-B320V320VgtGgtT2323B.1.1.2220.004692
ORF1ab/nsp15A1-B320V320VgtGgtA1622AY.420.000644
ORF1ab/nsp15A1-B320V320VgtGgtT622AY.420.000241
ORF1ab/nsp15A1-B320V320VgtGgtT2222AY.98.10.001065
ORF1ab/nsp15A1-B320V320VgtGgtT1718AY.390.00042
ORF1ab/nsp15A1-B320V320VgtGgtC118AY.390.000025
ORF1ab/nsp15A1-B320V320VgtGgtT1718B.1.6210.001505
ORF1ab/nsp15A1-B320V320VgtGgtC118B.1.6210.000089
ORF1ab/nsp15A1-B320V320VgtGgtT1717B.1.1770.000224
ORF1ab/nsp15A1-B320V320VgtGgtT1616B.1.1.500.010862
ORF1ab/nsp15A1-B320V320VgtGgtT1616B.1.2400.003449
ORF1ab/nsp15A1-B320V320VgtGgtT1616B.1.2580.001065
ORF1ab/nsp15A1-B320V320VgtGgtT1414A.241
ORF1ab/nsp15A1-B320V320VgtGgtT1414AY.1000.000644
ORF1ab/nsp15A1-B320V320VgtGgtT1414B.1.1.370.0027
ORF1ab/nsp15A1-B320V320VgtGgtT1213C.370.001393
ORF1ab/nsp15A1-B320V320VgtGgtA113C.370.000116
ORF1ab/nsp15A1-B320V320VgtGgtT1212AY.1180.000752
ORF1ab/nsp15A1-B320V320VgtGgtT1212B.1.177.160.007973
ORF1ab/nsp15A1-B320V320VgtGgtT1010AY.200.000389
ORF1ab/nsp15A1-B320V320VgtGgtC910AY.340.000873
ORF1ab/nsp15A1-B320V320VgtGgtT110AY.340.000097
ORF1ab/nsp15A1-B320V320VgtGgtT1010B.1.1.4190.074074
ORF1ab/nsp15A1-B320V320VgtGgtT1010B.1.617.10.00129
ORF1ab/nsp15A1-B320V320VgtGgtT99AY.230.000628
ORF1ab/nsp15A1-B320V320VgtGgtT99B.1.1.1920.020785
ORF1ab/nsp15A1-B320V320VgtGgtT88AY.450.000973
ORF1ab/nsp15A1-B320V320VgtGgtA67B.1.5250.000679
ORF1ab/nsp15A1-B320V320VgtGgtT17B.1.5250.000113
ORF1ab/nsp15A1-B320V320VgtGgtT66AE.80.002934
ORF1ab/nsp15A1-B320V320VgtGgtT66AY.4.20.00013
ORF1ab/nsp15A1-B320V320VgtGgtT56AY.690.000933
ORF1ab/nsp15A1-B320V320VgtGgtA16AY.690.000187
ORF1ab/nsp15A1-B320V320VgtGgtT56AY.75.10.000902
ORF1ab/nsp15A1-B320V320VgtGgtA16AY.75.10.00018
ORF1ab/nsp15A1-B320V320VgtGgtT66AY.850.002563
ORF1ab/nsp15A1-B320V320VgtGgtT66B.1.360.000875
ORF1ab/nsp15A1-B320V320VgtGgtT66B.1.5380.048387
ORF1ab/nsp15A1-B320V320VgtGgtT66P.1.160.002245
ORF1ab/nsp15A1-B320V320VgtGgtT45A.10.001127
ORF1ab/nsp15A1-B320V320VgtGgtA15A.10.000282
ORF1ab/nsp15A1-B320V320VgtGgtT55AY.1170.000423
ORF1ab/nsp15A1-B320V320VgtGgtT45AY.1190.000141
ORF1ab/nsp15A1-B320V320VgtGgtA15AY.1190.000035
ORF1ab/nsp15A1-B320V320VgtGgtT55AY.290.000079
ORF1ab/nsp15A1-B320V320VgtGgtT55AY.3.10.000426
ORF1ab/nsp15A1-B320V320VgtGgtT55AY.4.30.004209
ORF1ab/nsp15A1-B320V320VgtGgtT55AY.7.10.000564
ORF1ab/nsp15A1-B320V320VgtGgtT55AY.90.000338
ORF1ab/nsp15A1-B320V320VgtGgtT55B0.000639
ORF1ab/nsp15A1-B320V320VgtGgtT55B.1.230.030303
ORF1ab/nsp15A1-B320V320VgtGgtT55B.1.3770.022831
ORF1ab/nsp15A1-B320V320VgtGgtT55B.1.4290.000118
ORF1ab/nsp15A1-B320V320VgtGgtT55C.360.004554
ORF1ab/nsp15A1-B320V320VgtGgtT55P.1.20.00578
ORF1ab/nsp15A1-B320V320VgtGgtT44AY.1210.000541
ORF1ab/nsp15A1-B320V320VgtGgtT34AY.460.000312
ORF1ab/nsp15A1-B320V320VgtGgtA14AY.460.000104
ORF1ab/nsp15A1-B320V320VgtGgtT44AY.610.000419
ORF1ab/nsp15A1-B320V320VgtGgtT44AY.750.000224
ORF1ab/nsp15A1-B320V320VgtGgtT44AY.770.00451
ORF1ab/nsp15A1-B320V320VgtGgtT44B.1.177.570.001124
ORF1ab/nsp15A1-B320V320VgtGgtT44B.1.177.690.005935
ORF1ab/nsp15A1-B320V320VgtGgtT44B.1.2430.000278
ORF1ab/nsp15A1-B320V320VgtGgtT44B.1.3910.00451
ORF1ab/nsp15A1-B320V320VgtGgtT44B.1.4000.001716
ORF1ab/nsp15A1-B320V320VgtGgtT44B.1.438.10.000429
ORF1ab/nsp15A1-B320V320VgtGgtT44P.1.140.000191
ORF1ab/nsp15A1-B320V320VgtGgtT33A.2.50.001497
ORF1ab/nsp15A1-B320V320VgtGgtT33AY.1060.001005
ORF1ab/nsp15A1-B320V320VgtGgtT33AY.550.002752
ORF1ab/nsp15A1-B320V320VgtGgtT33AY.960.006224
ORF1ab/nsp15A1-B320V320VgtGgtT33B.1.1.3510.00838
ORF1ab/nsp15A1-B320V320VgtGgtT33B.1.1.3690.001339
ORF1ab/nsp15A1-B320V320VgtGgtT33B.1.177.210.000229
ORF1ab/nsp15A1-B320V320VgtGgtT33B.1.214.20.001799
ORF1ab/nsp15A1-B320V320VgtGgtT23B.1.6370.000146
ORF1ab/nsp15A1-B320V320VgtGgtC13B.1.6370.000073
ORF1ab/nsp15A1-B320V320VgtGgtT33C.36.30.001702
ORF1ab/nsp15A1-B320V320VgtGgtT33P.1.170.000485
ORF1ab/nsp15A1-B320V320VgtGgtT220.111111
ORF1ab/nsp15A1-B320V320VgtGgtT22A.210.00554
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.330.000134
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.360.000296
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.39.10.000079
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.4.10.001475
ORF1ab/nsp15A1-B320V320VgtGgtA22AY.700.000417
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.860.00166
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.9.20.000073
ORF1ab/nsp15A1-B320V320VgtGgtT22AY.950.001522
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.1.2090.017857
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.1.2140.000111
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.1.270.011299
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.1.280.000622
ORF1ab/nsp15A1-B320V320VgtGgtA22B.1.177.170.001642
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.177.810.000379
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.177.820.000955
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.36.160.002849
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.3670.001585
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.4560.006536
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.4590.008163
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.5880.00182
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.5960.000174
ORF1ab/nsp15A1-B320V320VgtGgtT22B.1.6090.000959
ORF1ab/nsp15A1-B320V320VgtGgtT22P.1.70.000639
ORF1ab/nsp15A1-B320V320VgtGgtT11A.2.20.001689
ORF1ab/nsp15A1-B320V320VgtGgtT11A.2.5.20.001572
ORF1ab/nsp15A1-B320V320VgtGgtT11A.23.10.000704
ORF1ab/nsp15A1-B320V320VgtGgtT11AE.50.018519
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.1050.000643
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.1160.000287
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.120.000316
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.1200.000037
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.240.000431
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.34.10.00051
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.4.40.000409
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.4.50.000107
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.410.000294
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.530.000288
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.590.00053
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.60.000041
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.620.000436
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.650.000533
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.70.000196
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.730.000665
ORF1ab/nsp15A1-B320V320VgtGgtT11AY.9.10.000084
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.1740.003378
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.1760.000439
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.2160.00089
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.250.000569
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.2630.001558
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.2650.003155
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.2690.001353
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.2910.000742
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.3120.001912
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.3170.000412
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.3480.000796
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.3720.000689
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.3760.005952
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.3970.002252
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.4480.002033
ORF1ab/nsp15A1-B320V320VgtGgtA11B.1.1.5230.001563
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1.670.004566
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1660.008475
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.177.70.000165
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.177.730.000566
ORF1ab/nsp15A1-B320V320VgtGgtA11B.1.177.770.000726
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.177.890.02439
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.1790.003759
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.2060.000816
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.258.110.000396
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.3290.000608
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.3490.000715
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.36.290.000517
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.3660.004878
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.3690.000285
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.3720.010989
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.3990.001934
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.4130.004255
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.4270.00005
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.466.20.000391
ORF1ab/nsp15A1-B320V320VgtGgtA11B.1.5200.021739
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.5400.009709
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.5760.000907
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.5820.000491
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.617.30.002985
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.6190.000871
ORF1ab/nsp15A1-B320V320VgtGgtT11B.1.6270.00202
ORF1ab/nsp15A1-B320V320VgtGgtT11B.400.000364
ORF1ab/nsp15A1-B320V320VgtGgtT11B.550.00295
ORF1ab/nsp15A1-B320V320VgtGgtT11B.570.015152
ORF1ab/nsp15A1-B320V320VgtGgtT11B.60.00091
ORF1ab/nsp15A1-B320V320VgtGgtT11B.600.015873
ORF1ab/nsp15A1-B320V320VgtGgtT11C.37.10.002618
ORF1ab/nsp15A1-B320V320VgtGgtT11D.20.000075
ORF1ab/nsp15A1-B320V320VgtGgtT11L.30.003546
ORF1ab/nsp15A1-B320V320VgtGgtT11N.40.004255
ORF1ab/nsp15A1-B320V320VgtGgtT11P.20.000187
ORF1ab/nsp15A1-B320V320VgtGgtT11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.