CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = V186V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	186	V186V	V6638V	syn	gtC	gtT	14599	14039	0.961641	20176-20178
ORF1ab/nsp15A1-B	186	V186V	V6638V	syn	gtC	gtA	14599	497	0.0340434	20176-20178
ORF1ab/nsp15A1-B	186	V186V	V6638V	syn	gtC	gtG	14599	63	0.00431536	20176-20178

Details of the mutation V186V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14039	14599	All	0.002685
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	497	14599	All	0.000095
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	63	14599	All	0.000012
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3343	3811	B.1.1.7	0.002993
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	425	3811	B.1.1.7	0.00038
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	43	3811	B.1.1.7	0.000038
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1453	1453	B.1.177.57	0.408261
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1076	1084	AY.4	0.001675
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	8	1084	AY.4	0.000012
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	872	887	B.1.617.2	0.003283
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	15	887	B.1.617.2	0.000056
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	501	502	B.1.2	0.004411
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	502	B.1.2	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	389	389	AY.29	0.006136
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	360	360	B.1.240	0.077603
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	327	328	P.1	0.005152
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	328	P.1	0.000016
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	266	267	AY.3	0.002646
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	267	AY.3	0.00001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	266	266	AY.103	0.001652
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	266	266	B.1.177	0.003503
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	244	256	AY.43	0.001081
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	10	256	AY.43	0.000044
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	256	AY.43	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	250	255	B.1	0.00229
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	3	255	B.1	0.000027
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	2	255	B.1	0.000018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	236	236	AY.44	0.001436
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	208	208	B.1.565	0.168558
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	202	202	B.1.526	0.004748
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	153	153	AY.25	0.00092
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	139	139	B.1.243	0.009672
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	134	134	B.1.1.214	0.007431
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	131	132	AY.42	0.00527
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	132	AY.42	0.00004
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	101	101	AY.36	0.01497
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	97	97	P.1.10	0.026139
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	94	94	AY.102	0.002492
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	88	88	B.1.429	0.002071
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	84	86	B.1.1	0.001524
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	86	B.1.1	0.000036
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	80	80	AY.4.2	0.001735
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	77	78	AY.20	0.002993
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	78	AY.20	0.000039
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	76	76	B.1.1.265	0.239748
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	65	65	B.1.1.519	0.002581
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	64	64	AY.33	0.004274
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	62	62	AY.7.1	0.006987
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	60	60	AY.75	0.003361
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	53	53	B.1.351	0.001576
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	52	52	B.1.596	0.004531
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	B.1.160	0.001528
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	B.1.177.54	0.029715
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	B.1.562	0.907407
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	C.36.3	0.027794
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	47	47	B.1.587	0.089184
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	44	44	AY.3.1	0.003751
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	39	39	B.1.1.227	0.169565
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	37	37	AY.5	0.000764
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	37	37	B.1.621	0.003275
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	33	36	AY.118	0.002067
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	3	36	AY.118	0.000188
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	36	36	B.1.401	0.295082
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	32	33	AY.23	0.002232
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	33	AY.23	0.00007
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	33	33	AY.47	0.001026
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	30	30	AY.26	0.000849
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	30	30	AY.39	0.000741
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	30	30	B.1.509	0.025974
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	28	28	C.37	0.00325
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	27	27	B.1.177.17	0.022167
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	26	26	AY.100	0.001196
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	25	25	AY.46.4	0.004113
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	25	25	B.1.1.222	0.0051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	24	24	P.1.10.2	1
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	22	23	B.1.221	0.001563
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	23	B.1.221	0.000071
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	23	23	B.1.575	0.006978
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	21	AY.46.6	0.001444
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	21	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	21	21	AY.85	0.008971
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	21	21	B.1.36	0.003064
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	21	P.1.14	0.000956
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	21	P.1.14	0.000048
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	21	21	P.1.17	0.003397
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	20	AY.119	0.000706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	20	B.1.1.70	0.006821
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	19	19	AY.48	0.008837
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	15	19	AY.61	0.001572
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	19	AY.61	0.000419
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	19	19	B.1.1.462	0.163793
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.120	0.000669
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.14	0.001584
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.97	0.030612
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.99.2	0.001659
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.234	0.002375
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.258	0.001198
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.311	0.004942
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.427	0.000909
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	16	16	AY.66	0.017112
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	16	16	B.1.1.207	0.018913
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	16	16	B.1.1.37	0.003086
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	AY.117	0.001268
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	AY.34	0.001454
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	B.1.1.241	0.031056
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	B.1.1.434	0.005228
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	AY.111	0.002564
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	AY.98	0.001106
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	B.1.1.176	0.006151
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	P.1.15	0.003253
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	13	13	B.1.1.28	0.004046
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	13	13	P.2	0.002426
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	13	13	R.1	0.00117
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	12	AY.45	0.001217
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	2	12	AY.45	0.000243
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	12	12	B.1.1.33	0.005051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	12	12	B.1.258.17	0.001248
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	12	D.2	0.000825
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	12	D.2	0.000075
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	AY.9.2	0.000404
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.177.53	0.026316
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.177.60	0.002403
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.177.83	0.016296
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.623	0.005901
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.29	0.038596
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.1.306	0.004384
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.1.368	0.030864
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.527	0.037037
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.577	0.006873
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	AY.19	0.010262
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	AY.4.5	0.000967
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	AY.46	0.000937
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	B.1.1.416	0.008145
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	AY.121	0.001083
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	AY.37	0.002528
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	B.1.1.297	0.017897
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	Q.1	0.001011
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	8	Q.8	0.000989
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	8	Q.8	0.00033
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	AY.39.1	0.000277
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	B.1.1.17	0.116667
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	B.1.1.317	0.002882
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	B.1.177.25	0.104478
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.113	0.000854
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.23.1	0.002504
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.52	0.004886
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.74	0.000694
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	6	AY.75.1	0.000902
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	6	AY.75.1	0.00018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.9	0.000406
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.98.1	0.000291
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.177.48	0.01875
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.177.81	0.001136
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	6	B.1.324	0.008026
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	1	6	B.1.324	0.001605
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	4	6	B.1.525	0.000453
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	6	B.1.525	0.000226
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.567	0.02
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.619	0.005226
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.637	0.000438
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	A	0.001935
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	AY.27	0.000324
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	AY.29.1	0.001103
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	AY.53	0.001438
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B	0.000639
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.1.311	0.001791
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.1.373	0.119048
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.160.16	0.004647
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.177.86	0.000917
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.517	0.002135
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.550	0.068493
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.617.1	0.000645
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.625	0.011765
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.626	0.028571
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.31	0.018657
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	N.5	0.008834
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	A.1	0.001127
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	A.19	0.037736
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AD.2	0.000876
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.1	0.001583
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.12	0.001264
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.13	0.000644
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.28	0.007561
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.6	0.000165
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.67	0.001857
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.1	0.001307
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.157	0.003653
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	4	B.1.1.25	0.001706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	4	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.369	0.001785
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.404	0.063492
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.15	0.002524
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.51	0.018265
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.7	0.000659
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.80	0.007648
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.258.3	0.0067
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	4	B.1.369	0.000856
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	1	4	B.1.369	0.000285
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.400	0.001716
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.478	0.047059
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.560	0.018519
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.595	0.001044
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	C.35	0.003096
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.10	0.00159
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.101	0.001471
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.116.1	0.000934
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.16	0.001139
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.49	0.009585
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.5.4	0.00083
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.82	0.004071
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.9.1	0.000251
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.90	0.002053
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.1.10	0.003344
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.160.27	0.045455
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.177.21	0.000229
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.177.62	0.003576
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.270	0.016854
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	3	B.1.36.1	0.002281
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	3	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.378	0.020548
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.389	0.003006
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.438.1	0.000322
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.466.2	0.001174
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.470	0.004213
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	A.2.5	0.000998
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	A.23.1	0.001408
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	A.29	0.010638
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.110	0.000225
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.116	0.000574
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.120.2.1	0.000997
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.16.1	0.00094
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	2	AY.34.1	0.00051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	2	AY.34.1	0.00051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.35	0.000466
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.38	0.000999
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.50	0.001599
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.55	0.001835
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.64	0.00119
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.68	0.000547
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	2	AY.69	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	2	AY.69	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.7.2	0.001119
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.71	0.00095
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.89	0.009804
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.159	0.009346
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.180	0.021505
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.27	0.011299
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.284	0.000215
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.318	0.000604
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.348	0.001592
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.385	0.008929
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.389	0.012121
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.39	0.001019
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.448	0.004065
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	2	B.1.1.464	0.002946
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.521	0.010695
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.525	0.010929
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.63	0.000772
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.111	0.00235
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.160.24	0.00885
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.177.12	0.000303
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.177.16	0.001329
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.192	0.018519
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.258.24	0.021505
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.279	0.001027
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.346	0.002621
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.349	0.00143
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.36.31	0.003503
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.408	0.00738
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.426	0.002018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.459	0.008163
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.499	0.002101
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.535	0.057143
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.574	0.004301
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.586	0.021978
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.621.1	0.001012
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.628	0.000705
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.1.1	0.000635
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.1.12	0.000968
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.1.4	0.001953
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.4	0.007605
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	Q.3	0.00029
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	A.2.5.2	0.001572
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	A.5	0.001923
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AE.8	0.000489
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AH.2	0.012048
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AU.1	0.001266
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.106	0.000335
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.108	0.001103
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.109	0.00074
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.21	0.001898
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.46.2	0.000635
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.46.3	0.000934
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.5.1	0.003759
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.76	0.004831
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.81	0.001992
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.87	0.000833
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.95	0.000761
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.96	0.002075
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.115	0.008929
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.117	0.009709
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.148	0.008772
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.153	0.001095
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.216	0.00089
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.218	0.007692
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.231	0.003096
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.269	0.001353
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.270	0.010309
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.274	0.005051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.282	0.011628
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.303	0.002762
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.304	0.002809
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.309	0.005848
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.312	0.001912
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.315	0.008475
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.316	0.000925
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.344	0.010753
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.351	0.002793
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.356	0.008547
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.367	0.055556
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.397	0.002252
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.411	0.014706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.432	0.001266
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.440	0.011765
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.507	0.008696
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.517	0.006803
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.528	0.004808
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.110.3	0.000718
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.118	0.006711
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.139	0.000733
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.146	0.004237
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.147	0.000756
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.153	0.018868
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.160.10	0.008065
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.160.18	0.007299
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.160.28	0.002924
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.160.31	0.008065
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.167	0.007812
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.20	0.001517
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.42	0.000894
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.56	0.000668
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.6	0.000977
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.65	0.000665
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.75	0.001041
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.77	0.000726
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.79	0.002342
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.199	0.004132
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.206	0.000816
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.22	0.001318
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.223	0.002778
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.241	0.000812
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.252	0.006623
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.258.19	0.007092
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.260	0.003344
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.265	0.001271
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.287	0.030303
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.315	0.006061
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.320	0.001245
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.332	0.003497
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.336	0.002439
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.16	0.001425
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.17	0.000494
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.25	0.002208
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.38	0.001642
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.7	0.004
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.361	0.001289
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.362.2	0.004717
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.366	0.004878
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.367	0.000792
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.398	0.002976
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.453	0.003236
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.467	0.04
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.468	0.005714
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.471	0.002732
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.503	0.002488
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.523	0.002451
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.532	0.006211
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.540	0.009709
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.568	0.001111
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.28	0.003279
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.3	0.000831
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.3.1	0.001658
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.45	0.003831
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.1.2	0.004255
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.11	0.010638
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.16	0.00106
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.36	0.000911
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.8	0.004464
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	N.1	0.016949
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	N.10	0.029412
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.13	0.000898
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.2	0.001156
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.3	0.001595
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	Q.4	0.000455
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.