CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = V127F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	127	V127F	V6579F	nonsyn	Gtt	Ttt	10351	10351	1	19999-20001

Details of the mutation V127F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10351	10351	All	0.00198
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2569	2569	B.1.177.45	0.979413
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1136	1136	P.1.17.1	0.993876
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	799	799	B.1.1.7	0.000715
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	797	797	AY.4	0.00124
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	549	549	P.1	0.008649
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	446	446	AY.9.2	0.016381
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	363	363	B.1.617.2	0.001367
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	310	310	AY.43	0.001373
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	238	238	AY.25	0.001432
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	232	232	AY.44	0.001412
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	198	198	B.1.2	0.001743
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	137	137	AY.29	0.002161
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	131	131	B.1.177	0.001725
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	129	129	AY.103	0.000801
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	121	121	AY.72	0.164626
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	110	110	B.1	0.001008
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	103	103	AY.3	0.001024
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	91	91	AY.92	0.026142
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	90	90	B.1.177.60	0.019659
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	73	73	AY.102	0.001936
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	67	67	AY.33	0.004474
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	63	63	B.1.1	0.001143
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	63	63	B.1.525	0.007129
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	56	56	B.1.160.16	0.052045
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	52	52	B.1.243	0.003618
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	44	44	AY.118	0.002757
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	40	40	AY.20	0.001555
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	36	36	B.1.429	0.000847
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	34	34	AY.39	0.00084
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	31	31	AY.23	0.002162
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	30	30	AY.42	0.001207
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	29	29	AY.54	0.002765
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	28	28	B.1.561	0.011116
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	26	26	AY.116	0.007456
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	26	26	AY.84	0.011374
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	25	25	AY.26	0.000708
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	24	24	B.1.305	0.051613
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	23	23	AY.4.2.1	0.003427
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	23	23	AY.5	0.000475
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	20	20	B.1.1.317	0.008234
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	19	19	AY.34	0.001842
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	19	19	AY.4.2	0.000412
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	17	17	B.1.177.4	0.003588
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	17	17	B.1.240	0.003665
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	17	17	B.1.526	0.0004
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	17	17	P.1.14	0.000813
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	15	15	AY.4.4	0.006137
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	15	15	AY.6	0.000617
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	15	15	AY.61	0.001572
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	15	15	B.1.1.519	0.000596
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	14	14	B.1.177.62	0.016687
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	14	14	B.1.351	0.000416
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	14	14	C.37	0.001625
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	13	13	AY.46	0.001353
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	13	13	B.1.36	0.001897
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	13	13	B.1.427	0.000656
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	12	12	AY.120	0.000446
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	12	12	AY.27	0.000777
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	12	12	AY.46.6	0.000866
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	12	12	AY.60	0.011257
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	11	11	AY.46.5	0.002183
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	11	11	B.1.1.284	0.001181
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	11	11	B.1.637	0.000804
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10	10	A.23.1	0.007042
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10	10	AY.119	0.000353
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10	10	B.1.160	0.000312
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10	10	B.1.617.1	0.00129
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10	10	B.1.630	0.052356
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	10	10	B.55	0.029499
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	AY.13	0.001449
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	AY.14	0.000792
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	AY.47	0.00028
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	AY.81	0.017928
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	AY.98.1	0.000436
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	B.1.231	0.290323
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	9	9	B.1.632	0.060403
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	AY.100	0.000368
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	AY.75	0.000448
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	AY.98	0.000632
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	B.1.36.17	0.003953
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	B.1.621	0.000708
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	P.1.1	0.002541
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	P.1.12	0.003872
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	P.2	0.001493
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	Q.8	0.001319
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	8	8	R.1	0.00072
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	7	7	AY.48	0.003256
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	7	7	B.1.234	0.000924
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	7	7	B.52	0.070707
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	7	7	C.36.3	0.003971
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	7	7	P.1.7	0.002235
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.117	0.000507
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.36	0.000889
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.46.4	0.000987
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.5.3	0.002024
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.75.1	0.001082
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.9.1	0.000502
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	AY.99	0.006296
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	B.1.459	0.02449
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	6	6	B.1.575	0.00182
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	AY.1	0.001979
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	AY.38	0.002496
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	AY.39.1	0.000198
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	AY.57	0.003281
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	AY.70	0.001043
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.1.214	0.000277
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.1.220	0.009294
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.1.222	0.00102
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.1.306	0.002192
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.177.21	0.000382
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.177.86	0.000917
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.258	0.000333
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.258.17	0.00052
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	B.1.609	0.002397
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	5	5	P.1.10	0.001347
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.101	0.001962
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.121	0.000541
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.34.1	0.00204
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.4.5	0.00043
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.71	0.0019
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.73	0.002661
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.74	0.000463
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.87	0.003331
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.88	0.003537
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	AY.9	0.00027
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.1.263	0.006231
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.1.41	0.025316
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.1.432	0.005063
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.222	0.006768
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.36.27	0.003053
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.595	0.001044
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	4	4	B.1.602	0.026144
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	A.2.5	0.001497
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.104	0.005952
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.113	0.000427
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.114	0.000693
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.12	0.000948
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.29.1	0.000662
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.45	0.000365
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.52	0.002443
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.53	0.000863
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.68	0.000821
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.7.1	0.000338
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.86	0.00249
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	AY.99.2	0.000276
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.1.318	0.000905
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.1.351	0.00838
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.111	0.003525
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.22	0.003953
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.311	0.000824
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.369	0.000856
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.397	0.014563
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.448	0.007874
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	3	3	B.1.599	0.010949
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AD.2	0.000438
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.111	0.000366
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.115	0.010417
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.41	0.000588
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.51	0.001818
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.65	0.001066
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.7.2	0.001119
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	AY.91	0.001461
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.1.121	0.004854
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.1.228	0.006098
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.1.28	0.000622
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.1.302	0.004149
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.1.37	0.000386
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.1.372	0.001377
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.177.32	0.002699
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.177.75	0.002081
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.177.77	0.001452
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.219	0.018868
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.336	0.004878
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.36.8	0.002
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.436	0.002058
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.441	0.019231
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.466.2	0.000782
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.499	0.002101
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.621.1	0.001012
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.1.631	0.006734
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.40	0.000729
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	B.6.6	0.001778
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	2	2	P.1.17	0.000324
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	A	0.000387
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	A.11	0.058824
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	A.18	0.05
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AH.3	0.003802
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.106	0.000335
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.108	0.001103
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.110	0.000113
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.30	0.000396
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.35	0.000233
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.46.2	0.000635
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.46.3	0.000934
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.5.2	0.002463
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.66	0.00107
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.77	0.001127
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.78	0.001541
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B	0.000128
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.142	0.017544
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.159	0.004673
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.161	0.003534
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.192	0.002309
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.221	0.010101
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.232	0.001815
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.254	0.011236
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.265	0.003155
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.291	0.000742
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.305	0.003861
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.311	0.000358
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.322	0.008772
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.329	0.003846
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.354	0.004386
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.369	0.000446
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.370	0.012658
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.406	0.006494
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.412	0.007634
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.464	0.001473
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.1.82	0.038462
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.110.3	0.000718
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.131	0.008772
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.160.12	0.00641
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.3	0.007634
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.33	0.001645
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.35	0.000691
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.42	0.000894
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.44	0.000519
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.57	0.000281
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.177.84	0.006667
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.189	0.004292
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.221.1	0.002907
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.237	0.004975
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.239	0.001221
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.241	0.000812
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.258.11	0.000396
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.313	0.006579
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.335	0.010309
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.340	0.004292
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.351.5	0.0006
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.354	0.043478
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.36.7	0.004
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.389	0.001002
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.393	0.028571
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.398	0.002976
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.437	0.020833
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.506	0.02381
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.509	0.000866
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.538	0.008065
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.548	0.035714
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.570	0.002941
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.590	0.004545
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.596.1	0.009346
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.619.1	0.000641
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.625	0.002353
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.627	0.00202
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.1.628	0.000352
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	B.39	0.002331
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	C.1	0.002392
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	C.16	0.00106
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	P.1.8	0.004785
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	P.3	0.001595
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	Q.4	0.000455
ORF1ab/nsp15A1-B	127	V127F	Gtt	Ttt	1	1	Q.6	0.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.