CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 287 | S287L | S6739L | nonsyn | tCa | tTa | 5548 | 5545 | 0.999459 | 20479-20481 |
ORF1ab/nsp15A1-B | 287 | S287L | S6739L | nonsyn | TCa | CTa | 5548 | 1 | 0.000180245 | 20479-20481 |
ORF1ab/nsp15A1-B | 287 | S287L | S6739L | nonsyn | tCA | tTG | 5548 | 1 | 0.000180245 | 20479-20481 |
ORF1ab/nsp15A1-B | 287 | S287L | S6739L | nonsyn | TCA | CTT | 5548 | 1 | 0.000180245 | 20479-20481 |
Details of the mutation S287L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5545 | 5548 | All | 0.001061 |
ORF1ab/nsp15A1-B | 287 | S287L | TCA | CTT | 1 | 5548 | All | 0 |
ORF1ab/nsp15A1-B | 287 | S287L | TCa | CTa | 1 | 5548 | All | 0 |
ORF1ab/nsp15A1-B | 287 | S287L | tCA | tTG | 1 | 5548 | All | 0 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1407 | 1409 | B.1.1.7 | 0.00126 |
ORF1ab/nsp15A1-B | 287 | S287L | tCA | tTG | 1 | 1409 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 287 | S287L | TCa | CTa | 1 | 1409 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 663 | 663 | B.1.617.2 | 0.002496 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 660 | 660 | AY.4 | 0.001027 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 244 | 244 | AY.25 | 0.001468 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 238 | 238 | AY.103 | 0.001478 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 175 | 175 | AY.27 | 0.011326 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 161 | 161 | AY.102 | 0.004269 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 107 | 108 | AY.44 | 0.000651 |
ORF1ab/nsp15A1-B | 287 | S287L | TCA | CTT | 1 | 108 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 100 | 100 | AY.29 | 0.001577 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 92 | 92 | AY.43 | 0.000408 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 66 | 66 | B.1.177 | 0.000869 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 65 | 65 | B.1 | 0.000595 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 63 | 63 | AY.39 | 0.001557 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 55 | 55 | P.1 | 0.000866 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 54 | 54 | AY.3 | 0.000537 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 50 | 50 | B.1.1.519 | 0.001986 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 47 | 47 | B.1.118 | 0.315436 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 47 | 47 | B.1.2 | 0.000414 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 42 | 42 | B.1.444 | 0.666667 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 39 | 39 | B.1.160 | 0.001216 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 37 | 37 | B.1.1 | 0.000671 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 34 | 34 | B.1.240 | 0.007329 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 34 | 34 | B.1.596 | 0.002963 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 32 | 32 | AY.111 | 0.005861 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 30 | 30 | AY.39.1 | 0.001188 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 28 | 28 | AY.104 | 0.055556 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 28 | 28 | B.1.429 | 0.000659 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 27 | 27 | AY.4.2 | 0.000586 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 23 | 23 | B.1.526 | 0.000541 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 20 | 20 | B.1.628 | 0.007047 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 19 | 19 | AY.98.1 | 0.00092 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 17 | 17 | B.1.177.8 | 0.012792 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 16 | 16 | AY.23 | 0.001116 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 16 | 16 | AY.9 | 0.001082 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 16 | 16 | B.1.637 | 0.001169 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 15 | 15 | AY.46.4 | 0.002468 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 13 | 13 | AY.116 | 0.003728 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 10 | 10 | B.1.160.31 | 0.080645 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 10 | 10 | D.2 | 0.00075 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 9 | 9 | B.1.1.333 | 0.009688 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 9 | 9 | B.1.1.433 | 0.012821 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 9 | 9 | B.1.568 | 0.01 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 8 | 8 | B.1.474 | 0.015209 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 8 | 8 | B.1.527 | 0.02963 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | AY.109 | 0.004438 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | AY.2 | 0.002137 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | Q.2 | 0.003681 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.1.344 | 0.043011 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.177.18 | 0.00464 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.282 | 0.023256 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.119 | 0.021053 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.381 | 0.04 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.493 | 0.025641 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | B.1.83 | 0.015385 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp15A1-B | 287 | S287L | tCa | tTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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