CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 19 | Q19H | Q6471H | nonsyn | caG | caT | 8239 | 8178 | 0.992596 | 19675-19677 |
ORF1ab/nsp15A1-B | 19 | Q19H | Q6471H | nonsyn | caG | caC | 8239 | 61 | 0.00740381 | 19675-19677 |
Details of the mutation Q19H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 8178 | 8239 | All | 0.001564 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 61 | 8239 | All | 0.000012 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4233 | 4233 | AY.114 | 0.978276 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1371 | 1374 | B.1.1.7 | 0.001227 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 3 | 1374 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 819 | 819 | B.1.139 | 0.60044 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 281 | 281 | AY.4 | 0.000437 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 233 | 233 | AY.25 | 0.001401 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 208 | 208 | AY.47 | 0.00647 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 177 | 180 | B.1.617.2 | 0.000666 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 3 | 180 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 85 | 85 | B.1.1 | 0.001542 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 73 | 74 | B.1 | 0.000669 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 74 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 53 | 53 | B.1.2 | 0.000467 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 43 | 43 | AY.44 | 0.000262 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 40 | 42 | B.1.526 | 0.00094 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 42 | B.1.526 | 0.000047 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 37 | 38 | AY.103 | 0.00023 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 38 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 35 | 36 | P.1 | 0.000551 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 36 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 34 | 34 | B.1.509 | 0.029437 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 30 | 30 | AY.65 | 0.015991 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 27 | 29 | B.1.177 | 0.000356 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 2 | 29 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 28 | 28 | AY.118 | 0.001754 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 21 | 25 | AY.43 | 0.000093 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 4 | 25 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 19 | 19 | A.2.5 | 0.009481 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 19 | 19 | B.1.351 | 0.000565 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 17 | 17 | AY.46.6 | 0.001228 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 13 | 13 | AY.46.2 | 0.008259 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 11 | 11 | B.1.469 | 0.039711 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 6 | AY.98.1 | 0.000194 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 2 | 6 | AY.98.1 | 0.000097 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 6 | 6 | B.1.438.2 | 0.115385 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 4 | P.2 | 0.00056 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 4 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | B.1.221.4 | 0.0125 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.262 | 0.015152 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caC | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp15A1-B | 19 | Q19H | caG | caT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|