CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 270 | P270S | P6722S | nonsyn | Cct | Tct | 1302 | 1298 | 0.996928 | 20428-20430 |
ORF1ab/nsp15A1-B | 270 | P270S | P6722S | nonsyn | CcT | TcG | 1302 | 2 | 0.0015361 | 20428-20430 |
ORF1ab/nsp15A1-B | 270 | P270S | P6722S | nonsyn | CcT | TcC | 1302 | 2 | 0.0015361 | 20428-20430 |
Details of the mutation P270S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1298 | 1302 | All | 0.000248 |
ORF1ab/nsp15A1-B | 270 | P270S | CcT | TcG | 2 | 1302 | All | 0 |
ORF1ab/nsp15A1-B | 270 | P270S | CcT | TcC | 2 | 1302 | All | 0 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 229 | 229 | B.1.1.7 | 0.000205 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 156 | 156 | AY.4 | 0.000243 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 45 | 45 | B.1.1.277 | 0.034143 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 39 | 39 | B.1.177.86 | 0.007155 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 33 | 33 | B.1.2 | 0.000291 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 31 | 31 | AY.116 | 0.00889 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 27 | 28 | AY.25 | 0.000162 |
ORF1ab/nsp15A1-B | 270 | P270S | CcT | TcC | 1 | 28 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 28 | 28 | B.1.1.153 | 0.030668 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 26 | 26 | AY.118 | 0.001629 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 25 | 25 | P.1 | 0.000394 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 23 | 23 | Q.3 | 0.003336 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 22 | 22 | B.1.1 | 0.000399 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 20 | 20 | B.1.1.518 | 0.126582 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 15 | 15 | AY.9.1 | 0.001256 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 15 | 15 | P.1.12 | 0.00726 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 12 | 12 | AY.46.6 | 0.000866 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 12 | 12 | B.1.177.18 | 0.013921 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 12 | 12 | B.1.177.6 | 0.011719 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 11 | 11 | AY.74 | 0.001272 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 10 | 10 | AY.4.4 | 0.004092 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 10 | 10 | B.1.1.317 | 0.004117 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 7 | 7 | B.1.1.225 | 0.05036 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | AT.1 | 0.025641 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | B | 0.000639 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | B.1.1.525 | 0.027322 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp15A1-B | 270 | P270S | CcT | TcG | 2 | 4 | 0.111111 | |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 4 | 0.055556 | |
ORF1ab/nsp15A1-B | 270 | P270S | CcT | TcC | 1 | 4 | 0.055556 | |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | B.6.6 | 0.003556 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | A.2.4 | 0.010101 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | AY.115 | 0.015625 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | B.1.127 | 0.006593 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | B.1.177.59 | 0.048387 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | A.2.2 | 0.003378 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.1.194 | 0.009901 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.177.88 | 0.024691 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.382 | 0.017857 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp15A1-B | 270 | P270S | Cct | Tct | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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