CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 205 | P205L | P6657L | nonsyn | cCc | cTc | 10417 | 10406 | 0.998944 | 20233-20235 |
ORF1ab/nsp15A1-B | 205 | P205L | P6657L | nonsyn | CCC | TTA | 10417 | 9 | 0.000863972 | 20233-20235 |
ORF1ab/nsp15A1-B | 205 | P205L | P6657L | nonsyn | cCC | cTA | 10417 | 1 | 0.0000959969 | 20233-20235 |
ORF1ab/nsp15A1-B | 205 | P205L | P6657L | nonsyn | cCC | cTG | 10417 | 1 | 0.0000959969 | 20233-20235 |
Details of the mutation P205L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 10406 | 10417 | All | 0.00199 |
ORF1ab/nsp15A1-B | 205 | P205L | CCC | TTA | 9 | 10417 | All | 0.000002 |
ORF1ab/nsp15A1-B | 205 | P205L | cCC | cTA | 1 | 10417 | All | 0 |
ORF1ab/nsp15A1-B | 205 | P205L | cCC | cTG | 1 | 10417 | All | 0 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 8371 | 8371 | AY.25 | 0.05035 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 313 | 313 | AY.4 | 0.000487 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 254 | 262 | B.1.1.7 | 0.000227 |
ORF1ab/nsp15A1-B | 205 | P205L | CCC | TTA | 8 | 262 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 167 | 167 | AY.33 | 0.011152 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 144 | 144 | B.1.617.2 | 0.000542 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 96 | 96 | P.2 | 0.017917 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 84 | 84 | B.1.1.57 | 0.965517 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 82 | 82 | AY.43 | 0.000363 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 80 | 80 | B.1.2 | 0.000704 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 52 | 55 | B.1.1 | 0.000943 |
ORF1ab/nsp15A1-B | 205 | P205L | CCC | TTA | 1 | 55 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 205 | P205L | cCC | cTG | 1 | 55 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 205 | P205L | cCC | cTA | 1 | 55 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 48 | 48 | B.1.177 | 0.000632 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 43 | 43 | AY.3 | 0.000428 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 36 | 36 | AY.44 | 0.000219 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 31 | 31 | AY.46.4 | 0.0051 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 27 | 27 | AY.102 | 0.000716 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 22 | 22 | B.1 | 0.000202 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 21 | 21 | AY.13 | 0.003381 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 18 | 18 | AY.100 | 0.000828 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 17 | 17 | B.1.621 | 0.001505 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 15 | 15 | B.1.177.75 | 0.015609 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 15 | 15 | W.3 | 0.078947 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 14 | 14 | B.1.258.22 | 0.037333 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 13 | 13 | B.1.609 | 0.006232 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 11 | 11 | AY.23.1 | 0.004591 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 6 | 6 | B.1.375 | 0.004918 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.1.163 | 0.015267 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.1.98 | 0.037037 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.160.18 | 0.014599 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 205 | P205L | cCc | cTc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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