CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = L250L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B250L250LL6702LsynCtaTta8167300.89460820368-20370
ORF1ab/nsp15A1-B250L250LL6702LsynctActG816700.085784320368-20370
ORF1ab/nsp15A1-B250L250LL6702LsynctActC81690.011029420368-20370
ORF1ab/nsp15A1-B250L250LL6702LsynctActT81670.0085784320368-20370

Details of the mutation L250L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B250L250LCtaTta730816All0.00014
ORF1ab/nsp15A1-B250L250LctActG70816All0.000013
ORF1ab/nsp15A1-B250L250LctActC9816All0.000002
ORF1ab/nsp15A1-B250L250LctActT7816All0.000001
ORF1ab/nsp15A1-B250L250LCtaTta188188AY.440.001144
ORF1ab/nsp15A1-B250L250LCtaTta133133B.1.1.2360.917241
ORF1ab/nsp15A1-B250L250LCtaTta6063B.1.617.20.000226
ORF1ab/nsp15A1-B250L250LctActG363B.1.617.20.000011
ORF1ab/nsp15A1-B250L250LCtaTta3849B.1.1.70.000034
ORF1ab/nsp15A1-B250L250LctActG1149B.1.1.70.00001
ORF1ab/nsp15A1-B250L250LCtaTta2328B.1.1770.000303
ORF1ab/nsp15A1-B250L250LctActC528B.1.1770.000066
ORF1ab/nsp15A1-B250L250LCtaTta2525B.1.5110.862069
ORF1ab/nsp15A1-B250L250LCtaTta2222AY.610.002305
ORF1ab/nsp15A1-B250L250LCtaTta2020AY.330.001336
ORF1ab/nsp15A1-B250L250LCtaTta1516AY.1030.000093
ORF1ab/nsp15A1-B250L250LctActG116AY.1030.000006
ORF1ab/nsp15A1-B250L250LCtaTta1516B.1.10.000272
ORF1ab/nsp15A1-B250L250LctActG116B.1.10.000018
ORF1ab/nsp15A1-B250L250LCtaTta814AY.430.000035
ORF1ab/nsp15A1-B250L250LctActG514AY.430.000022
ORF1ab/nsp15A1-B250L250LctActC114AY.430.000004
ORF1ab/nsp15A1-B250L250LctActG1214P.20.00224
ORF1ab/nsp15A1-B250L250LCtaTta214P.20.000373
ORF1ab/nsp15A1-B250L250LCtaTta713AY.30.00007
ORF1ab/nsp15A1-B250L250LctActG613AY.30.00006
ORF1ab/nsp15A1-B250L250LCtaTta1112AY.250.000066
ORF1ab/nsp15A1-B250L250LctActG112AY.250.000006
ORF1ab/nsp15A1-B250L250LCtaTta912AY.40.000014
ORF1ab/nsp15A1-B250L250LctActG212AY.40.000003
ORF1ab/nsp15A1-B250L250LctActT112AY.40.000002
ORF1ab/nsp15A1-B250L250LCtaTta610B.10.000055
ORF1ab/nsp15A1-B250L250LctActG210B.10.000018
ORF1ab/nsp15A1-B250L250LctActC110B.10.000009
ORF1ab/nsp15A1-B250L250LctActT110B.10.000009
ORF1ab/nsp15A1-B250L250LCtaTta99AY.540.000858
ORF1ab/nsp15A1-B250L250LCtaTta99AY.9.20.000331
ORF1ab/nsp15A1-B250L250LCtaTta79B.1.20.000062
ORF1ab/nsp15A1-B250L250LctActG29B.1.20.000018
ORF1ab/nsp15A1-B250L250LCtaTta89B.1.3510.000238
ORF1ab/nsp15A1-B250L250LctActT19B.1.3510.00003
ORF1ab/nsp15A1-B250L250LCtaTta88AY.750.000448
ORF1ab/nsp15A1-B250L250LCtaTta88B.1.2580.000532
ORF1ab/nsp15A1-B250L250LCtaTta67AY.98.10.000291
ORF1ab/nsp15A1-B250L250LctActC17AY.98.10.000048
ORF1ab/nsp15A1-B250L250LCtaTta77B.1.4290.000165
ORF1ab/nsp15A1-B250L250LctActG36AY.1020.00008
ORF1ab/nsp15A1-B250L250LCtaTta36AY.1020.00008
ORF1ab/nsp15A1-B250L250LCtaTta55AY.1180.000313
ORF1ab/nsp15A1-B250L250LCtaTta55B.1.177.770.003631
ORF1ab/nsp15A1-B250L250LCtaTta44AY.1000.000184
ORF1ab/nsp15A1-B250L250LctActG44AY.1040.007937
ORF1ab/nsp15A1-B250L250LCtaTta44B.1.1.1890.006051
ORF1ab/nsp15A1-B250L250LCtaTta44B.1.438.10.000429
ORF1ab/nsp15A1-B250L250LCtaTta44P.1.140.000191
ORF1ab/nsp15A1-B250L250LctActT330.166667
ORF1ab/nsp15A1-B250L250LCtaTta23AY.1190.000071
ORF1ab/nsp15A1-B250L250LctActG13AY.1190.000035
ORF1ab/nsp15A1-B250L250LCtaTta33AY.130.000483
ORF1ab/nsp15A1-B250L250LctActG23AY.470.000062
ORF1ab/nsp15A1-B250L250LCtaTta13AY.470.000031
ORF1ab/nsp15A1-B250L250LCtaTta33AY.980.000237
ORF1ab/nsp15A1-B250L250LCtaTta33B.1.177.40.000633
ORF1ab/nsp15A1-B250L250LCtaTta33C.370.000348
ORF1ab/nsp15A1-B250L250LCtaTta33P.1.10.000953
ORF1ab/nsp15A1-B250L250LCtaTta22AY.1200.000074
ORF1ab/nsp15A1-B250L250LCtaTta22AY.140.000176
ORF1ab/nsp15A1-B250L250LCtaTta22AY.16.10.00094
ORF1ab/nsp15A1-B250L250LctActG12AY.230.00007
ORF1ab/nsp15A1-B250L250LCtaTta12AY.230.00007
ORF1ab/nsp15A1-B250L250LCtaTta22AY.260.000057
ORF1ab/nsp15A1-B250L250LCtaTta22AY.290.000032
ORF1ab/nsp15A1-B250L250LCtaTta22AY.390.000049
ORF1ab/nsp15A1-B250L250LCtaTta22AY.39.10.000079
ORF1ab/nsp15A1-B250L250LCtaTta22B.1.1.2030.033898
ORF1ab/nsp15A1-B250L250LctActG22B.1.1.250.001137
ORF1ab/nsp15A1-B250L250LctActG22B.1.1.3680.006173
ORF1ab/nsp15A1-B250L250LCtaTta22B.1.1.630.000772
ORF1ab/nsp15A1-B250L250LCtaTta22B.1.177.720.00678
ORF1ab/nsp15A1-B250L250LctActG22B.1.2360.004107
ORF1ab/nsp15A1-B250L250LctActG22B.1.617.10.000258
ORF1ab/nsp15A1-B250L250LCtaTta22P.10.000032
ORF1ab/nsp15A1-B250L250LctActG11AY.1170.000085
ORF1ab/nsp15A1-B250L250LCtaTta11AY.370.000316
ORF1ab/nsp15A1-B250L250LctActG11AY.380.000499
ORF1ab/nsp15A1-B250L250LCtaTta11AY.4.20.000022
ORF1ab/nsp15A1-B250L250LCtaTta11AY.46.50.000198
ORF1ab/nsp15A1-B250L250LctActG11AY.5.30.000337
ORF1ab/nsp15A1-B250L250LCtaTta11AY.650.000533
ORF1ab/nsp15A1-B250L250LCtaTta11AY.75.10.00018
ORF1ab/nsp15A1-B250L250LCtaTta11AY.99.20.000092
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.2220.000204
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.3060.000438
ORF1ab/nsp15A1-B250L250LctActT11B.1.1.3720.000689
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.3890.006061
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.4200.001006
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.510.001718
ORF1ab/nsp15A1-B250L250LctActG11B.1.1.5190.00004
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.2340.000132
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.258.170.000104
ORF1ab/nsp15A1-B250L250LctActG11B.1.4970.000315
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.595.10.005848
ORF1ab/nsp15A1-B250L250LctActC11B.1.5960.000087
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.6210.000089
ORF1ab/nsp15A1-B250L250LCtaTta11D.20.000075