CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 17 | G17G | G6469G | syn | ggA | ggG | 320 | 164 | 0.5125 | 19669-19671 |
ORF1ab/nsp15A1-B | 17 | G17G | G6469G | syn | ggA | ggT | 320 | 137 | 0.428125 | 19669-19671 |
ORF1ab/nsp15A1-B | 17 | G17G | G6469G | syn | ggA | ggC | 320 | 19 | 0.059375 | 19669-19671 |
Details of the mutation G17G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 164 | 320 | All | 0.000031 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 137 | 320 | All | 0.000026 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 19 | 320 | All | 0.000004 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 43 | 43 | AY.29 | 0.000678 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 30 | 36 | B.1.2 | 0.000264 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 6 | 36 | B.1.2 | 0.000053 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 22 | 31 | B.1.429 | 0.000518 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 9 | 31 | B.1.429 | 0.000212 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 11 | 18 | AY.25 | 0.000066 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 6 | 18 | AY.25 | 0.000036 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 18 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 15 | 18 | AY.26 | 0.000425 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 3 | 18 | AY.26 | 0.000085 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 7 | 12 | AY.4 | 0.000011 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 4 | 12 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 12 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 9 | 10 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 10 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 5 | 9 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 3 | 9 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 1 | 9 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 7 | 8 | B.1.617.2 | 0.000026 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 8 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 5 | 7 | B.1.1.519 | 0.000199 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 2 | 7 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 3 | 4 | AY.39 | 0.000074 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 4 | 4 | B.1.510 | 0.105263 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 3 | B.1.427 | 0.000101 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.1.270 | 0.010309 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggT | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp15A1-B | 17 | G17G | ggA | ggG | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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