CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 176 | F176F | F6628F | syn | ttC | ttT | 22220 | 22220 | 1 | 20146-20148 |
Details of the mutation F176F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 22220 | 22220 | All | 0.00425 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 10672 | 10672 | B.1.621 | 0.944676 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4381 | 4381 | B.1.1.7 | 0.003922 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1901 | 1901 | B.1.621.1 | 0.961558 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 734 | 734 | B.1.36 | 0.107091 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 390 | 390 | AY.29 | 0.006152 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 313 | 313 | AY.4 | 0.000487 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 268 | 268 | B.1.617.2 | 0.001009 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 184 | 184 | AY.44 | 0.00112 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 176 | 176 | B.1 | 0.001612 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 153 | 153 | AY.43 | 0.000678 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 141 | 141 | B.1.232 | 0.075766 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 124 | 124 | AY.98.1 | 0.006005 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 117 | 117 | B.1.1 | 0.002122 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 116 | 116 | B.1.544 | 0.698795 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 113 | 113 | AY.7.1 | 0.012735 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 102 | 102 | B.1.177.4 | 0.021528 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 101 | 101 | B.1.429 | 0.002376 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 82 | 82 | B.1.351 | 0.002438 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 78 | 78 | B.1.1.176 | 0.034271 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 74 | 74 | B.1.2 | 0.000652 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 70 | 70 | AY.103 | 0.000435 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 64 | 64 | B.1.526 | 0.001504 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 61 | 61 | AY.3 | 0.000607 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 57 | 57 | AY.118 | 0.003571 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 56 | 56 | AE.1 | 0.636364 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 54 | 54 | P.1.10 | 0.014551 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 52 | 52 | AY.25 | 0.000313 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 52 | 52 | P.1 | 0.000819 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 49 | 49 | C.1.2 | 0.208511 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 44 | 44 | B.1.78 | 0.376068 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 43 | 43 | B.1.627 | 0.086869 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 41 | 41 | B.1.1.170 | 0.051122 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 39 | 39 | AY.75 | 0.002185 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 38 | 38 | AY.26 | 0.001076 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 37 | 37 | AY.121 | 0.005007 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 36 | 36 | AY.120 | 0.001338 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 36 | 36 | B.1.1.519 | 0.00143 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 35 | 35 | AY.102 | 0.000928 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 28 | 28 | B.1.1.72 | 0.848485 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 27 | 27 | B.1.221 | 0.001918 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 26 | 26 | B.1.623 | 0.013948 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 23 | 23 | AY.5 | 0.000475 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 21 | 21 | B.1.456 | 0.068627 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 20 | 20 | B.13 | 0.909091 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 19 | 19 | AY.46.6 | 0.001372 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 19 | 19 | Q.8 | 0.003133 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 16 | 16 | B.1.324 | 0.025682 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 16 | 16 | B.1.637 | 0.001169 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 15 | 15 | B.1.214.2 | 0.008993 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 15 | 15 | B.1.416 | 0.019036 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 15 | 15 | Q.3 | 0.002175 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 14 | 14 | AY.30 | 0.00554 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 13 | 13 | AY.34.1 | 0.006629 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 13 | 13 | B.1.1.406 | 0.084416 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 13 | 13 | B.1.525 | 0.001471 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 13 | 13 | B.1.565 | 0.010535 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 12 | 12 | A.1 | 0.003382 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 12 | 12 | AY.47 | 0.000373 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 12 | 12 | P.1.12 | 0.005808 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 12 | 12 | R.1 | 0.00108 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | AY.60 | 0.010319 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | B.1.177.21 | 0.000841 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | B.1.349 | 0.007863 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 9 | 9 | A.2.5 | 0.004491 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 9 | 9 | B | 0.00115 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 9 | 9 | B.1.177.56 | 0.006008 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 7 | 7 | B.1.1.169 | 0.127273 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | AY.38 | 0.002996 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | B.1.157 | 0.01791 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | B.1.320 | 0.007472 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | C.36.3.1 | 0.016304 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.1.125 | 0.05102 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.177.63 | 0.013514 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | B.1.378 | 0.027397 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | C.35 | 0.003096 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.177.83 | 0.004444 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.225 | 0.046154 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.422 | 0.002437 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.533 | 0.028846 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.558 | 0.013699 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.31 | 0.037037 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.135 | 0.00939 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.1.99 | 0.047619 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.401 | 0.016393 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | B.1.633 | 0.083333 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AH.1 | 0.142857 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.461 | 0.012048 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | L.4 | 0.05 |
ORF1ab/nsp15A1-B | 176 | F176F | ttC | ttT | 1 | 1 | N.3 | 0.005814 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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