CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = D39Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B39D39YD6491YnonsynGatTat656465630.99984819735-19737
ORF1ab/nsp15A1-B39D39YD6491YnonsynGaTTaC656410.00015234619735-19737

Details of the mutation D39Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B39D39YGatTat65636564All0.001255
ORF1ab/nsp15A1-B39D39YGaTTaC16564All0
ORF1ab/nsp15A1-B39D39YGatTat810810AY.800.914221
ORF1ab/nsp15A1-B39D39YGatTat591591AY.1030.00367
ORF1ab/nsp15A1-B39D39YGatTat581581AY.40.000904
ORF1ab/nsp15A1-B39D39YGatTat534534AY.440.00325
ORF1ab/nsp15A1-B39D39YGatTat468468B.1.617.20.001762
ORF1ab/nsp15A1-B39D39YGatTat421421B.1.5960.036685
ORF1ab/nsp15A1-B39D39YGatTat271272B.1.1.70.000243
ORF1ab/nsp15A1-B39D39YGaTTaC1272B.1.1.70.000001
ORF1ab/nsp15A1-B39D39YGatTat201201AY.430.000891
ORF1ab/nsp15A1-B39D39YGatTat199199B.1.160.280.581871
ORF1ab/nsp15A1-B39D39YGatTat162162AY.46.60.011698
ORF1ab/nsp15A1-B39D39YGatTat159159AY.5.30.053644
ORF1ab/nsp15A1-B39D39YGatTat143143B.1.1770.001883
ORF1ab/nsp15A1-B39D39YGatTat121121B.10.001108
ORF1ab/nsp15A1-B39D39YGatTat119119AY.30.001184
ORF1ab/nsp15A1-B39D39YGatTat113113AY.610.01184
ORF1ab/nsp15A1-B39D39YGatTat9898AY.250.000589
ORF1ab/nsp15A1-B39D39YGatTat9696AY.1020.002545
ORF1ab/nsp15A1-B39D39YGatTat6565AY.390.001606
ORF1ab/nsp15A1-B39D39YGatTat6262B.1.20.000546
ORF1ab/nsp15A1-B39D39YGatTat6060AY.50.001239
ORF1ab/nsp15A1-B39D39YGatTat6060B.1.5990.218978
ORF1ab/nsp15A1-B39D39YGatTat5656B.1.4290.001318
ORF1ab/nsp15A1-B39D39YGatTat4848B.1.3510.001427
ORF1ab/nsp15A1-B39D39YGatTat4747AY.460.004892
ORF1ab/nsp15A1-B39D39YGatTat4747B.1.2580.003128
ORF1ab/nsp15A1-B39D39YGatTat4242B.1.10.000762
ORF1ab/nsp15A1-B39D39YGatTat3939AY.340.003782
ORF1ab/nsp15A1-B39D39YGatTat3636AY.420.001448
ORF1ab/nsp15A1-B39D39YGatTat3535AY.1130.004984
ORF1ab/nsp15A1-B39D39YGatTat3535AY.200.00136
ORF1ab/nsp15A1-B39D39YGatTat3131B.1.4270.001565
ORF1ab/nsp15A1-B39D39YGatTat2929B.1.1.2310.089783
ORF1ab/nsp15A1-B39D39YGatTat2727P.10.000425
ORF1ab/nsp15A1-B39D39YGatTat2626AY.4.50.002795
ORF1ab/nsp15A1-B39D39YGatTat2525AY.260.000708
ORF1ab/nsp15A1-B39D39YGatTat2121AY.680.005749
ORF1ab/nsp15A1-B39D39YGatTat1919B.1.1600.000593
ORF1ab/nsp15A1-B39D39YGatTat1818AY.9.10.001507
ORF1ab/nsp15A1-B39D39YGatTat1818B.1.36.360.010837
ORF1ab/nsp15A1-B39D39YGatTat1717AY.290.000268
ORF1ab/nsp15A1-B39D39YGatTat1616AY.450.001947
ORF1ab/nsp15A1-B39D39YGatTat1414B.1.1.330.005892
ORF1ab/nsp15A1-B39D39YGatTat1414P.1.10.004447
ORF1ab/nsp15A1-B39D39YGatTat1313AY.1200.000483
ORF1ab/nsp15A1-B39D39YGatTat1313B.1.1.2220.002652
ORF1ab/nsp15A1-B39D39YGatTat1313B.1.1.5190.000516
ORF1ab/nsp15A1-B39D39YGatTat1212B.1.5820.005888
ORF1ab/nsp15A1-B39D39YGatTat1212R.10.00108
ORF1ab/nsp15A1-B39D39YGatTat1111AY.4.20.000239
ORF1ab/nsp15A1-B39D39YGatTat1111B.1.1.2570.106796
ORF1ab/nsp15A1-B39D39YGatTat1111B.1.1.3060.004822
ORF1ab/nsp15A1-B39D39YGatTat1010AY.410.002939
ORF1ab/nsp15A1-B39D39YGatTat99AY.116.10.002803
ORF1ab/nsp15A1-B39D39YGatTat99AY.160.003417
ORF1ab/nsp15A1-B39D39YGatTat99AY.330.000601
ORF1ab/nsp15A1-B39D39YGatTat99AY.75.10.001623
ORF1ab/nsp15A1-B39D39YGatTat99B.1.1.2790.01009
ORF1ab/nsp15A1-B39D39YGatTat99B.1.360.001313
ORF1ab/nsp15A1-B39D39YGatTat88B.1.1.440.019277
ORF1ab/nsp15A1-B39D39YGatTat88B.1.2210.000568
ORF1ab/nsp15A1-B39D39YGatTat88B.1.4710.021858
ORF1ab/nsp15A1-B39D39YGatTat88B.1.5260.000188
ORF1ab/nsp15A1-B39D39YGatTat88B.1.5650.006483
ORF1ab/nsp15A1-B39D39YGatTat77AY.170.057377
ORF1ab/nsp15A1-B39D39YGatTat77AY.9.20.000257
ORF1ab/nsp15A1-B39D39YGatTat77B.1.1.2140.000388
ORF1ab/nsp15A1-B39D39YGatTat66AY.1000.000276
ORF1ab/nsp15A1-B39D39YGatTat66AY.1060.002009
ORF1ab/nsp15A1-B39D39YGatTat66AY.5.40.00166
ORF1ab/nsp15A1-B39D39YGatTat66B.1.4000.002574
ORF1ab/nsp15A1-B39D39YGatTat66B.1.617.10.000774
ORF1ab/nsp15A1-B39D39YGatTat66B.1.6210.000531
ORF1ab/nsp15A1-B39D39YGatTat55AY.1190.000177
ORF1ab/nsp15A1-B39D39YGatTat55AY.120.10.001605
ORF1ab/nsp15A1-B39D39YGatTat55AY.230.000349
ORF1ab/nsp15A1-B39D39YGatTat55AY.4.40.002046
ORF1ab/nsp15A1-B39D39YGatTat55B.1.2080.2
ORF1ab/nsp15A1-B39D39YGatTat55B.1.3110.001373
ORF1ab/nsp15A1-B39D39YGatTat55B.1.438.10.000536
ORF1ab/nsp15A1-B39D39YGatTat55B.1.5250.000566
ORF1ab/nsp15A1-B39D39YGatTat55B.1.5950.001305
ORF1ab/nsp15A1-B39D39YGatTat55B.1.6120.013263
ORF1ab/nsp15A1-B39D39YGatTat44AY.190.004561
ORF1ab/nsp15A1-B39D39YGatTat44AY.350.000932
ORF1ab/nsp15A1-B39D39YGatTat44AY.470.000124
ORF1ab/nsp15A1-B39D39YGatTat44AY.670.001857
ORF1ab/nsp15A1-B39D39YGatTat44B.1.1.100.004459
ORF1ab/nsp15A1-B39D39YGatTat44B.1.1.250.002274
ORF1ab/nsp15A1-B39D39YGatTat44B.1.36.10.004561
ORF1ab/nsp15A1-B39D39YGatTat44B.1.5610.001588
ORF1ab/nsp15A1-B39D39YGatTat44C.140.017316
ORF1ab/nsp15A1-B39D39YGatTat33AY.100.00159
ORF1ab/nsp15A1-B39D39YGatTat33AY.1170.000254
ORF1ab/nsp15A1-B39D39YGatTat33AY.1210.000406
ORF1ab/nsp15A1-B39D39YGatTat33AY.16.10.00141
ORF1ab/nsp15A1-B39D39YGatTat33AY.270.000194
ORF1ab/nsp15A1-B39D39YGatTat33AY.550.002752
ORF1ab/nsp15A1-B39D39YGatTat33AY.60.000123
ORF1ab/nsp15A1-B39D39YGatTat33AY.750.000168
ORF1ab/nsp15A1-B39D39YGatTat33AY.870.002498
ORF1ab/nsp15A1-B39D39YGatTat33AY.98.10.000145
ORF1ab/nsp15A1-B39D39YGatTat33AY.99.20.000276
ORF1ab/nsp15A1-B39D39YGatTat33B.1.1.1890.004539
ORF1ab/nsp15A1-B39D39YGatTat33B.1.1.3180.000905
ORF1ab/nsp15A1-B39D39YGatTat33B.1.1.4580.125
ORF1ab/nsp15A1-B39D39YGatTat33B.1.1.540.009063
ORF1ab/nsp15A1-B39D39YGatTat33B.1.177.860.00055
ORF1ab/nsp15A1-B39D39YGatTat33B.1.2430.000209
ORF1ab/nsp15A1-B39D39YGatTat33B.1.3160.333333
ORF1ab/nsp15A1-B39D39YGatTat33B.1.36.220.003623
ORF1ab/nsp15A1-B39D39YGatTat33B.1.428.20.1
ORF1ab/nsp15A1-B39D39YGatTat33B.1.6090.001438
ORF1ab/nsp15A1-B39D39YGatTat33B.1.9.40.018405
ORF1ab/nsp15A1-B39D39YGatTat33P.1.140.000143
ORF1ab/nsp15A1-B39D39YGatTat22AY.1180.000125
ORF1ab/nsp15A1-B39D39YGatTat22AY.120.20.002571
ORF1ab/nsp15A1-B39D39YGatTat22AY.130.000322
ORF1ab/nsp15A1-B39D39YGatTat22AY.39.10.000079
ORF1ab/nsp15A1-B39D39YGatTat22AY.690.000373
ORF1ab/nsp15A1-B39D39YGatTat22AY.710.00095
ORF1ab/nsp15A1-B39D39YGatTat22AY.980.000158
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.10.000653
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.3170.000823
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.3980.006452
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.4640.002946
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.500.001358
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.630.000772
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1.700.000682
ORF1ab/nsp15A1-B39D39YGatTat22B.1.177.210.000153
ORF1ab/nsp15A1-B39D39YGatTat22B.1.177.520.003515
ORF1ab/nsp15A1-B39D39YGatTat22B.1.1950.01005
ORF1ab/nsp15A1-B39D39YGatTat22B.1.2100.004264
ORF1ab/nsp15A1-B39D39YGatTat22B.1.3060.011429
ORF1ab/nsp15A1-B39D39YGatTat22B.1.4090.001563
ORF1ab/nsp15A1-B39D39YGatTat22B.1.4480.005249
ORF1ab/nsp15A1-B39D39YGatTat22B.1.6370.000146
ORF1ab/nsp15A1-B39D39YGatTat22D.20.00015
ORF1ab/nsp15A1-B39D39YGatTat22P.1.70.000639
ORF1ab/nsp15A1-B39D39YGatTat22P.20.000373
ORF1ab/nsp15A1-B39D39YGatTat22P.50.027397
ORF1ab/nsp15A1-B39D39YGatTat22Q.80.00033
ORF1ab/nsp15A1-B39D39YGatTat22U.20.017544
ORF1ab/nsp15A1-B39D39YGatTat110.055556
ORF1ab/nsp15A1-B39D39YGatTat11A.10.000282
ORF1ab/nsp15A1-B39D39YGatTat11A.120.166667
ORF1ab/nsp15A1-B39D39YGatTat11A.50.001923
ORF1ab/nsp15A1-B39D39YGatTat11AD.20.000219
ORF1ab/nsp15A1-B39D39YGatTat11AT.10.005128
ORF1ab/nsp15A1-B39D39YGatTat11AY.1070.000466
ORF1ab/nsp15A1-B39D39YGatTat11AY.1100.000113
ORF1ab/nsp15A1-B39D39YGatTat11AY.1140.000231
ORF1ab/nsp15A1-B39D39YGatTat11AY.1160.000287
ORF1ab/nsp15A1-B39D39YGatTat11AY.120.2.10.000498
ORF1ab/nsp15A1-B39D39YGatTat11AY.20.000356
ORF1ab/nsp15A1-B39D39YGatTat11AY.34.10.00051
ORF1ab/nsp15A1-B39D39YGatTat11AY.360.000148
ORF1ab/nsp15A1-B39D39YGatTat11AY.370.000316
ORF1ab/nsp15A1-B39D39YGatTat11AY.4.2.10.000149
ORF1ab/nsp15A1-B39D39YGatTat11AY.4.30.000842
ORF1ab/nsp15A1-B39D39YGatTat11AY.400.000964
ORF1ab/nsp15A1-B39D39YGatTat11AY.510.000909
ORF1ab/nsp15A1-B39D39YGatTat11AY.520.000814
ORF1ab/nsp15A1-B39D39YGatTat11AY.540.000095
ORF1ab/nsp15A1-B39D39YGatTat11AY.600.000938
ORF1ab/nsp15A1-B39D39YGatTat11AY.620.000436
ORF1ab/nsp15A1-B39D39YGatTat11AY.7.10.000113
ORF1ab/nsp15A1-B39D39YGatTat11AY.700.000209
ORF1ab/nsp15A1-B39D39YGatTat11AY.730.000665
ORF1ab/nsp15A1-B39D39YGatTat11AY.740.000116
ORF1ab/nsp15A1-B39D39YGatTat11AY.770.001127
ORF1ab/nsp15A1-B39D39YGatTat11AY.790.001211
ORF1ab/nsp15A1-B39D39YGatTat11AY.810.001992
ORF1ab/nsp15A1-B39D39YGatTat11AY.90.000068
ORF1ab/nsp15A1-B39D39YGatTat11AY.950.000761
ORF1ab/nsp15A1-B39D39YGatTat11AY.970.001701
ORF1ab/nsp15A1-B39D39YGatTat11AZ.20.000821
ORF1ab/nsp15A1-B39D39YGatTat11B0.000128
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.1280.007092
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.2160.00089
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.2190.005
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.2770.000759
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.2840.000107
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.3110.000358
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.3160.000925
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.3220.008772
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.3300.0625
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.3560.008547
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.3690.000446
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.390.00051
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.4860.001577
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1.5280.004808
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1260.001276
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.100.000878
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.120.000152
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.150.000631
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.330.001645
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.440.000519
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.460.000918
ORF1ab/nsp15A1-B39D39YGatTat11B.1.177.690.001484
ORF1ab/nsp15A1-B39D39YGatTat11B.1.1890.004292
ORF1ab/nsp15A1-B39D39YGatTat11B.1.2010.005682
ORF1ab/nsp15A1-B39D39YGatTat11B.1.220.001318
ORF1ab/nsp15A1-B39D39YGatTat11B.1.230.006061
ORF1ab/nsp15A1-B39D39YGatTat11B.1.2320.000537
ORF1ab/nsp15A1-B39D39YGatTat11B.1.2340.000132
ORF1ab/nsp15A1-B39D39YGatTat11B.1.258.170.000104
ORF1ab/nsp15A1-B39D39YGatTat11B.1.2790.000514
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3240.001605
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3290.000608
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3320.003497
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3490.000715
ORF1ab/nsp15A1-B39D39YGatTat11B.1.351.20.000303
ORF1ab/nsp15A1-B39D39YGatTat11B.1.36.100.004785
ORF1ab/nsp15A1-B39D39YGatTat11B.1.36.20.010753
ORF1ab/nsp15A1-B39D39YGatTat11B.1.362.20.004717
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3660.004878
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3690.000285
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3830.009009
ORF1ab/nsp15A1-B39D39YGatTat11B.1.3890.001002
ORF1ab/nsp15A1-B39D39YGatTat11B.1.4040.001302
ORF1ab/nsp15A1-B39D39YGatTat11B.1.4080.00369
ORF1ab/nsp15A1-B39D39YGatTat11B.1.4280.00102
ORF1ab/nsp15A1-B39D39YGatTat11B.1.4380.006536
ORF1ab/nsp15A1-B39D39YGatTat11B.1.4520.013699
ORF1ab/nsp15A1-B39D39YGatTat11B.1.4660.023256
ORF1ab/nsp15A1-B39D39YGatTat11B.1.466.20.000391
ORF1ab/nsp15A1-B39D39YGatTat11B.1.5150.014493
ORF1ab/nsp15A1-B39D39YGatTat11B.1.5210.004975
ORF1ab/nsp15A1-B39D39YGatTat11B.1.5380.008065
ORF1ab/nsp15A1-B39D39YGatTat11B.1.5770.000687
ORF1ab/nsp15A1-B39D39YGatTat11B.1.621.10.000506
ORF1ab/nsp15A1-B39D39YGatTat11B.1.80.001972
ORF1ab/nsp15A1-B39D39YGatTat11B.1.88.10.004808
ORF1ab/nsp15A1-B39D39YGatTat11B.1.9.50.005682
ORF1ab/nsp15A1-B39D39YGatTat11B.1.910.002075
ORF1ab/nsp15A1-B39D39YGatTat11B.1.930.000934
ORF1ab/nsp15A1-B39D39YGatTat11B.200.023256
ORF1ab/nsp15A1-B39D39YGatTat11B.40.002208
ORF1ab/nsp15A1-B39D39YGatTat11B.4.70.010101
ORF1ab/nsp15A1-B39D39YGatTat11C.350.000774
ORF1ab/nsp15A1-B39D39YGatTat11C.36.30.000567
ORF1ab/nsp15A1-B39D39YGatTat11N.30.005814
ORF1ab/nsp15A1-B39D39YGatTat11Q.30.000145