CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = D272D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B272D272DD6724DsyngaCgaT63826382120434-20436

Details of the mutation D272D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B272D272DgaCgaT63826382All0.001221
ORF1ab/nsp15A1-B272D272DgaCgaT16071607AY.10.635932
ORF1ab/nsp15A1-B272D272DgaCgaT10501050B.1.1.70.00094
ORF1ab/nsp15A1-B272D272DgaCgaT376376B.1.617.20.001416
ORF1ab/nsp15A1-B272D272DgaCgaT343343AY.40.000534
ORF1ab/nsp15A1-B272D272DgaCgaT270270AY.430.001196
ORF1ab/nsp15A1-B272D272DgaCgaT268268AY.390.006623
ORF1ab/nsp15A1-B272D272DgaCgaT253253P.40.961977
ORF1ab/nsp15A1-B272D272DgaCgaT223223AY.1030.001385
ORF1ab/nsp15A1-B272D272DgaCgaT175175B.1.10.003175
ORF1ab/nsp15A1-B272D272DgaCgaT138138Q.30.020015
ORF1ab/nsp15A1-B272D272DgaCgaT125125B.1.177.860.022932
ORF1ab/nsp15A1-B272D272DgaCgaT123123B.1.1770.00162
ORF1ab/nsp15A1-B272D272DgaCgaT9393B.1.20.000819
ORF1ab/nsp15A1-B272D272DgaCgaT6363AY.440.000383
ORF1ab/nsp15A1-B272D272DgaCgaT6363B.1.4270.003181
ORF1ab/nsp15A1-B272D272DgaCgaT5858B.10.000531
ORF1ab/nsp15A1-B272D272DgaCgaT5555P.10.000866
ORF1ab/nsp15A1-B272D272DgaCgaT4949B.1.466.20.019171
ORF1ab/nsp15A1-B272D272DgaCgaT4848AY.30.000477
ORF1ab/nsp15A1-B272D272DgaCgaT4242AY.250.000253
ORF1ab/nsp15A1-B272D272DgaCgaT4141AY.750.002297
ORF1ab/nsp15A1-B272D272DgaCgaT3939AY.1170.003296
ORF1ab/nsp15A1-B272D272DgaCgaT3535AY.690.006534
ORF1ab/nsp15A1-B272D272DgaCgaT3535B.1.258.170.003639
ORF1ab/nsp15A1-B272D272DgaCgaT3434AY.230.002371
ORF1ab/nsp15A1-B272D272DgaCgaT3333B.1.351.20.009985
ORF1ab/nsp15A1-B272D272DgaCgaT2323AY.4.20.000499
ORF1ab/nsp15A1-B272D272DgaCgaT2121AY.50.000434
ORF1ab/nsp15A1-B272D272DgaCgaT2020B.1.177.570.00562
ORF1ab/nsp15A1-B272D272DgaCgaT1818AY.360.002668
ORF1ab/nsp15A1-B272D272DgaCgaT1717AY.110.022758
ORF1ab/nsp15A1-B272D272DgaCgaT1717AY.46.50.003373
ORF1ab/nsp15A1-B272D272DgaCgaT1717B.1.1600.00053
ORF1ab/nsp15A1-B272D272DgaCgaT1616AY.1180.001002
ORF1ab/nsp15A1-B272D272DgaCgaT1515AY.610.001572
ORF1ab/nsp15A1-B272D272DgaCgaT1515AY.7.20.008389
ORF1ab/nsp15A1-B272D272DgaCgaT1313AY.450.001582
ORF1ab/nsp15A1-B272D272DgaCgaT1313AY.680.003559
ORF1ab/nsp15A1-B272D272DgaCgaT1212AY.330.000801
ORF1ab/nsp15A1-B272D272DgaCgaT1212C.370.001393
ORF1ab/nsp15A1-B272D272DgaCgaT1111AY.1020.000292
ORF1ab/nsp15A1-B272D272DgaCgaT1111AY.260.000311
ORF1ab/nsp15A1-B272D272DgaCgaT1111B.1.4290.000259
ORF1ab/nsp15A1-B272D272DgaCgaT1111B.1.6210.000974
ORF1ab/nsp15A1-B272D272DgaCgaT1010B.1.2210.00071
ORF1ab/nsp15A1-B272D272DgaCgaT99AY.1200.000335
ORF1ab/nsp15A1-B272D272DgaCgaT99AY.190.010262
ORF1ab/nsp15A1-B272D272DgaCgaT99AY.370.002845
ORF1ab/nsp15A1-B272D272DgaCgaT88AY.3.10.000682
ORF1ab/nsp15A1-B272D272DgaCgaT88AY.470.000249
ORF1ab/nsp15A1-B272D272DgaCgaT88B.1.177.150.005047
ORF1ab/nsp15A1-B272D272DgaCgaT88B.1.177.440.004152
ORF1ab/nsp15A1-B272D272DgaCgaT88B.1.2400.001725
ORF1ab/nsp15A1-B272D272DgaCgaT88B.1.2580.000532
ORF1ab/nsp15A1-B272D272DgaCgaT77AY.1190.000247
ORF1ab/nsp15A1-B272D272DgaCgaT77B.1.264.10.333333
ORF1ab/nsp15A1-B272D272DgaCgaT77B.1.3510.000208
ORF1ab/nsp15A1-B272D272DgaCgaT66AY.1000.000276
ORF1ab/nsp15A1-B272D272DgaCgaT66AY.1130.000854
ORF1ab/nsp15A1-B272D272DgaCgaT66AY.200.000233
ORF1ab/nsp15A1-B272D272DgaCgaT66AY.4.2.10.000894
ORF1ab/nsp15A1-B272D272DgaCgaT66B.1.1.1590.028037
ORF1ab/nsp15A1-B272D272DgaCgaT66B.1.1.700.002046
ORF1ab/nsp15A1-B272D272DgaCgaT55AY.1210.000677
ORF1ab/nsp15A1-B272D272DgaCgaT55AY.460.00052
ORF1ab/nsp15A1-B272D272DgaCgaT55AY.5.30.001687
ORF1ab/nsp15A1-B272D272DgaCgaT55AY.860.004149
ORF1ab/nsp15A1-B272D272DgaCgaT55AY.980.000395
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.1.10.001633
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.1.3510.013966
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.177.810.000947
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.2430.000348
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.36.330.037879
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.5260.000118
ORF1ab/nsp15A1-B272D272DgaCgaT55B.1.5750.001517
ORF1ab/nsp15A1-B272D272DgaCgaT55C.36.30.002836
ORF1ab/nsp15A1-B272D272DgaCgaT55P.1.170.000809
ORF1ab/nsp15A1-B272D272DgaCgaT44AY.160.001519
ORF1ab/nsp15A1-B272D272DgaCgaT44AY.290.000063
ORF1ab/nsp15A1-B272D272DgaCgaT44AY.9.20.000147
ORF1ab/nsp15A1-B272D272DgaCgaT44AY.920.001149
ORF1ab/nsp15A1-B272D272DgaCgaT44AY.99.20.000369
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.1.250.002274
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.1.2940.005063
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.1.5190.000159
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.1.5280.019231
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.1.900.4
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.177.210.000306
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.177.530.009569
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.214.20.002398
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.360.000584
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.5250.000453
ORF1ab/nsp15A1-B272D272DgaCgaT44B.1.5960.000349
ORF1ab/nsp15A1-B272D272DgaCgaT44C.1.20.017021
ORF1ab/nsp15A1-B272D272DgaCgaT44C.40.04
ORF1ab/nsp15A1-B272D272DgaCgaT44Q.80.00066
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.1160.00086
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.300.001187
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.340.000291
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.4.50.000322
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.510.002727
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.60.000123
ORF1ab/nsp15A1-B272D272DgaCgaT33AY.620.001307
ORF1ab/nsp15A1-B272D272DgaCgaT33B.1.1.3060.001315
ORF1ab/nsp15A1-B272D272DgaCgaT33B.1.1.4640.004418
ORF1ab/nsp15A1-B272D272DgaCgaT33B.1.5450.043478
ORF1ab/nsp15A1-B272D272DgaCgaT33P.1.150.000697
ORF1ab/nsp15A1-B272D272DgaCgaT33Q.10.000379
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.1110.000366
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.23.10.000835
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.46.20.001271
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.590.001059
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.670.000929
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.730.001331
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.780.003082
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.90.000135
ORF1ab/nsp15A1-B272D272DgaCgaT22AY.98.10.000097
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.1.2140.000111
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.1.2910.001485
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.1.3180.000604
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.1.330.000842
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.1.390.001019
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.1.630.000772
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.221.20.008032
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.2340.000264
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.3110.000549
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.36.290.001035
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.3960.001411
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.438.10.000215
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.5240.002813
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.5740.004301
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.617.10.000258
ORF1ab/nsp15A1-B272D272DgaCgaT22B.1.6200.001892
ORF1ab/nsp15A1-B272D272DgaCgaT22P.1.140.000096
ORF1ab/nsp15A1-B272D272DgaCgaT22P.1.70.000639
ORF1ab/nsp15A1-B272D272DgaCgaT22P.20.000373
ORF1ab/nsp15A1-B272D272DgaCgaT22Q.40.00091
ORF1ab/nsp15A1-B272D272DgaCgaT22W.10.017391
ORF1ab/nsp15A1-B272D272DgaCgaT110.055556
ORF1ab/nsp15A1-B272D272DgaCgaT11A.2.5.20.001572
ORF1ab/nsp15A1-B272D272DgaCgaT11AU.10.001266
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.1010.00049
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.1050.000643
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.116.10.000311
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.120.000316
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.130.000161
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.140.000088
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.220.002092
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.240.000431
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.270.000065
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.320.000532
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.34.10.00051
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.380.000499
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.400.000964
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.46.40.000165
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.530.000288
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.560.001605
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.600.000938
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.650.000533
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.70.000196
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.740.000116
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.790.001211
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.820.001357
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.840.000437
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.850.000427
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.870.000833
ORF1ab/nsp15A1-B272D272DgaCgaT11AY.9.10.000084
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.2200.001859
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.2530.002506
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.280.000311
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.2800.003086
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.3120.001912
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.3370.003597
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.3710.010417
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.4110.014706
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.4120.007634
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.4850.016667
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1.4870.005587
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.110.30.000718
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.1490.003425
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.120.000152
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.230.003236
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.300.002513
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.540.000606
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.620.001192
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.70.000165
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.730.000566
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.770.000726
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.177.820.000477
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.2100.002132
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.221.10.002907
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.2320.000537
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.258.190.007092
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.2760.016949
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.3200.001245
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.36.80.001
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.3690.000285
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.400.10.015152
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.4020.009804
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.4090.000781
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.4220.000812
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.4700.001404
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.5800.004065
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.5850.027778
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.5880.00091
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.6280.000352
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.6370.000073
ORF1ab/nsp15A1-B272D272DgaCgaT11B.1.780.008547
ORF1ab/nsp15A1-B272D272DgaCgaT11B.30.000831
ORF1ab/nsp15A1-B272D272DgaCgaT11B.390.002331
ORF1ab/nsp15A1-B272D272DgaCgaT11B.450.003831
ORF1ab/nsp15A1-B272D272DgaCgaT11C.160.00106
ORF1ab/nsp15A1-B272D272DgaCgaT11C.180.002591
ORF1ab/nsp15A1-B272D272DgaCgaT11C.36.10.004149
ORF1ab/nsp15A1-B272D272DgaCgaT11D.30.005917
ORF1ab/nsp15A1-B272D272DgaCgaT11P.1.100.000269
ORF1ab/nsp15A1-B272D272DgaCgaT11P.1.120.000484
ORF1ab/nsp15A1-B272D272DgaCgaT11P.1.17.10.000875
ORF1ab/nsp15A1-B272D272DgaCgaT11P.1.20.001156
ORF1ab/nsp15A1-B272D272DgaCgaT11P.30.001595
ORF1ab/nsp15A1-B272D272DgaCgaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.