CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 128 | D128Y | D6580Y | nonsyn | Gat | Tat | 2929 | 2929 | 1 | 20002-20004 |
Details of the mutation D128Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2929 | 2929 | All | 0.00056 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 400 | 400 | AU.2 | 0.968523 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 377 | 377 | B.1.362 | 0.580894 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 372 | 372 | B.1.1.7 | 0.000333 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 185 | 185 | AY.4 | 0.000288 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 140 | 140 | B.1.617.2 | 0.000527 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 122 | 122 | B.1.160 | 0.003805 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 87 | 87 | AY.102 | 0.002307 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 61 | 61 | AY.103 | 0.000379 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 56 | 56 | AY.43 | 0.000248 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 55 | 55 | B.1.2 | 0.000484 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 53 | 53 | A.15 | 0.84127 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 52 | 52 | B.1.1.519 | 0.002065 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 51 | 51 | AY.25 | 0.000307 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 47 | 47 | AY.44 | 0.000286 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 47 | 47 | AY.98.1 | 0.002276 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 46 | 46 | AY.3 | 0.000458 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 46 | 46 | AY.34.1 | 0.023457 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 45 | 45 | P.1 | 0.000709 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 42 | 42 | AY.46 | 0.004371 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 36 | 36 | AY.46.6 | 0.002599 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 25 | 25 | AY.99.2 | 0.002304 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 25 | 25 | B.1.1.526 | 0.088652 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 22 | 22 | AY.9 | 0.001487 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 21 | 21 | B.1.621.1 | 0.010622 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 17 | 17 | AY.105 | 0.010932 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 15 | 15 | AY.60 | 0.014071 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 14 | 14 | R.1 | 0.00126 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 13 | 13 | B.1.1.348 | 0.01035 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 12 | 12 | A.1 | 0.003382 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 12 | 12 | AY.30 | 0.004749 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 9 | 9 | B.1.469 | 0.032491 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | B.1.177.55 | 0.011655 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.1.135 | 0.014085 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.189 | 0.012876 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.359 | 0.068182 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.221.3 | 0.001667 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp15A1-B | 128 | D128Y | Gat | Tat | 1 | 1 | B.6.2 | 0.0625 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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