CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : Mut = A81V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	81	A81V	A6533V	nonsyn	gCt	gTt	11793	11789	0.999661	19861-19863
ORF1ab/nsp15A1-B	81	A81V	A6533V	nonsyn	gCT	gTC	11793	4	0.000339184	19861-19863

Details of the mutation A81V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	11789	11793	All	0.002255
ORF1ab/nsp15A1-B	81	A81V	gCT	gTC	4	11793	All	0.000001
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3418	3418	B.1.1.7	0.00306
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1484	1484	B.1.1.37	0.28621
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	783	783	AY.4	0.001219
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	769	769	AY.43	0.003407
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	378	378	B.1.617.2	0.001423
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	274	274	AY.119	0.009674
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	263	263	B.1.427	0.013281
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	259	259	B.1.2	0.002281
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	216	216	P.1.6	0.420233
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	188	188	AY.9.2	0.006905
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	167	167	AY.75	0.009356
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	164	164	AY.4.2	0.003557
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	145	145	AY.103	0.0009
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	130	130	AY.102	0.003447
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	120	120	AY.26	0.003397
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	116	116	AY.33	0.007746
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	116	116	C.38	0.935484
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	107	107	B.1.1.70	0.036494
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	101	101	AY.25	0.000607
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	89	89	B.1	0.000815
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	87	87	P.1	0.001371
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	84	84	B.1.258.14	0.082353
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	79	83	AY.3	0.000786
ORF1ab/nsp15A1-B	81	A81V	gCT	gTC	4	83	AY.3	0.00004
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	83	83	AY.39	0.002051
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	75	75	AY.44	0.000457
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	71	71	B.1.1.519	0.002819
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	71	71	B.1.243	0.004941
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	70	70	B.1.1	0.00127
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	62	62	B.1.351	0.001843
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	58	58	B.1.177	0.000764
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	57	57	B.1.526	0.00134
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	55	55	B.1.177.7	0.009067
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	54	54	B.1.210	0.115139
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	53	53	AY.36	0.007855
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	48	48	AY.8	0.029091
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	48	48	B.4.4	0.90566
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	44	44	AY.61	0.00461
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	42	42	AY.20	0.001632
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	38	38	B.1.160	0.001185
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	35	35	B.1.429	0.000824
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	33	33	AY.39.1	0.001307
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	32	32	AY.46	0.003331
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	29	29	B.1.177.62	0.034565
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	27	27	B.1.517	0.011529
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	26	26	B.1.1.284	0.002792
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	24	24	AY.16	0.009112
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	24	24	B.1.1.33	0.010101
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	22	22	B.1.621	0.001947
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	21	21	AY.29	0.000331
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	21	21	B.1.1.63	0.008102
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	19	19	AY.5	0.000392
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	19	19	B.1.1.216	0.016919
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	18	18	AY.70	0.003753
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	18	18	B.1.1.271	1
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	18	18	B.1.258.17	0.001871
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	18	18	B.1.399	0.034816
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	17	17	AY.100	0.000782
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	17	17	AY.42	0.000684
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	16	16	B.1.1.369	0.00714
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	16	16	B.1.258	0.001065
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	15	15	AY.118	0.00094
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	15	15	B.1.637	0.001096
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	15	15	D.2	0.001126
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	14	14	B.1.1.214	0.000776
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	14	14	B.1.221	0.000994
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	14	14	B.1.416	0.017766
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	13	13	AY.1	0.005144
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	13	13	AY.110	0.001465
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	13	13	AY.117	0.001099
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	13	13	AY.91	0.009496
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	12	12	B.1.453	0.038835
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	11	11	AY.98	0.000869
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	11	11	B.1.1.306	0.004822
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	11	11	B.1.617.1	0.001419
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	10	10	A.1	0.002818
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	10	10	AY.120	0.000372
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	10	10	AY.15	0.022222
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	10	10	AY.46.6	0.000722
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	10	10	B.1.177.21	0.000765
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	10	10	B.1.634	0.034247
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	9	9	AY.23	0.000628
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	9	9	AY.27	0.000582
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	9	9	B.1.596	0.000784
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	9	9	B.40	0.003279
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	9	9	P.2	0.00168
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	9	9	Q.8	0.001484
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	AY.47	0.000249
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	AY.6	0.000329
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	AY.62	0.003486
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	AY.7.1	0.000902
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	AY.98.1	0.000387
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	B.1.1.309	0.046784
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	B.1.1.368	0.024691
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	B.1.240	0.001725
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	B.1.438.1	0.000858
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	8	8	B.1.525	0.000905
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	AY.34	0.000679
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	AY.5.3	0.002362
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	AY.54	0.000667
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	AY.9	0.000473
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	B	0.000895
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	B.1.1.253	0.017544
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	B.1.177.73	0.003964
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	7	7	B.1.400	0.003003
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	AD.2	0.001314
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	AY.113	0.000854
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	AY.99.2	0.000553
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	B.1.1.316	0.00555
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	B.4	0.013245
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	C.11	0.06383
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	C.36.3	0.003403
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	C.37	0.000696
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	6	6	Q.1	0.000758
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	AY.24	0.002155
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	AY.4.5	0.000537
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	AY.5.4	0.001384
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	AY.59	0.002648
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	B.1.177.4	0.001055
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	B.1.177.56	0.003338
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	B.1.234	0.00066
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	B.1.420	0.052083
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	5	5	P.1.12	0.00242
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	AY.10	0.00212
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	AY.116	0.001147
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	AY.13	0.000644
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	AY.45	0.000487
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	AY.84	0.00175
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	AY.94	0.001771
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.1.263	0.006231
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.1.354	0.017544
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.1.434	0.001394
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.36	0.000584
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.565	0.003241
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.575	0.001214
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	B.1.595	0.001044
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	C.23	0.023256
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	P.1.10	0.001078
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	P.1.14	0.000191
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	4	4	P.1.15	0.000929
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	A.2.5	0.001497
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.116.1	0.000934
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.120.1	0.000963
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.121	0.000406
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.14	0.000264
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.35	0.000699
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.38	0.001498
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.46.4	0.000494
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.46.5	0.000595
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.65	0.001599
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.7	0.000588
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.74	0.000347
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	AY.9.1	0.000251
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.1.317	0.001235
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.1.448	0.006098
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.1.523	0.004687
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.177.57	0.000843
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.177.68	0.045455
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.279	0.001541
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.36.1	0.003421
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.369	0.000856
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.378	0.020548
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.422	0.002437
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.497	0.000944
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.609	0.001438
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	B.1.628	0.001057
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	3	3	C.36.3.1	0.008152
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.114	0.000462
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.16.1	0.00094
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.2	0.000712
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.34.1	0.00102
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.67	0.000929
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.75.1	0.000361
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.78	0.003082
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.90	0.001369
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	AY.95	0.001522
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.189	0.003026
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.222	0.000408
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.286	0.005797
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.300	0.021505
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.372	0.001377
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.377	0.002762
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.416	0.00181
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.458	0.083333
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.1.521	0.010695
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.160.10	0.016129
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.177.15	0.001262
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.258.12	0.015748
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.311	0.000549
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.499	0.002101
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.564	0.000852
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.564.1	0.003155
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.574	0.004301
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.1.620	0.001892
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	B.28	0.006557
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	C.37.1	0.005236
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	2	2	Q.2	0.001227
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	A.28	0.002646
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	A.6	0.005128
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AE.8	0.000489
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AW.1	0.003049
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.104	0.001984
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.106	0.000335
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.108	0.001103
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.111	0.000183
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.22	0.002092
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.23.1	0.000417
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.4.3	0.000842
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.4.4	0.000409
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.46.1	0.001027
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.64	0.000595
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.69	0.000187
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.7.2	0.000559
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.71	0.000475
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.72	0.001361
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.82	0.001357
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.86	0.00083
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.87	0.000833
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	AZ.3	0.00152
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.149	0.016393
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.163	0.007634
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.170	0.001247
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.174	0.003378
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.251	0.007937
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.269	0.001353
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.27	0.00565
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.288	0.001916
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.329	0.003846
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.333	0.001076
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.337	0.003597
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.349	0.010309
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.371	0.010417
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.449	0.022727
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.461	0.012048
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.466	0.008696
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.51	0.001718
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.526	0.003546
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.1.59	0.006494
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.111	0.001175
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.119	0.010526
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.170	0.00431
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.177.12	0.000152
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.177.35	0.000691
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.177.52	0.001757
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.177.6	0.000977
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.177.60	0.000218
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.214.1	0.02
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.222	0.001692
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.243.1	0.022222
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.258.11	0.000396
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.258.7	0.001912
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.260	0.003344
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.276	0.016949
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.280	0.007143
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.349	0.000715
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.351.5	0.0006
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.359	0.022727
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.36.24	0.006173
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.407	0.035714
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.436	0.001029
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.441	0.009615
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.462	0.007246
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.469	0.00361
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.509	0.000866
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.521	0.004975
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.544	0.006024
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.549	0.007194
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.551	0.00129
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.558	0.004566
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.570	0.002941
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.595.3	0.026316
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.600	0.005848
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.612	0.002653
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.1.636	0.006711
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.23	0.002924
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.3	0.000831
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	B.60	0.015873
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	C.1.1	0.076923
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	C.16	0.00106
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	C.36	0.000911
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	C.36.1	0.004149
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	L.3	0.003546
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	P.1.17	0.000162
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	P.5	0.013699
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	R.1	0.00009
ORF1ab/nsp15A1-B	81	A81V	gCt	gTt	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.