CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 81 | A81V | A6533V | nonsyn | gCt | gTt | 11793 | 11789 | 0.999661 | 19861-19863 |
ORF1ab/nsp15A1-B | 81 | A81V | A6533V | nonsyn | gCT | gTC | 11793 | 4 | 0.000339184 | 19861-19863 |
Details of the mutation A81V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 11789 | 11793 | All | 0.002255 |
ORF1ab/nsp15A1-B | 81 | A81V | gCT | gTC | 4 | 11793 | All | 0.000001 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3418 | 3418 | B.1.1.7 | 0.00306 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1484 | 1484 | B.1.1.37 | 0.28621 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 783 | 783 | AY.4 | 0.001219 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 769 | 769 | AY.43 | 0.003407 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 378 | 378 | B.1.617.2 | 0.001423 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 274 | 274 | AY.119 | 0.009674 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 263 | 263 | B.1.427 | 0.013281 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 259 | 259 | B.1.2 | 0.002281 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 216 | 216 | P.1.6 | 0.420233 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 188 | 188 | AY.9.2 | 0.006905 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 167 | 167 | AY.75 | 0.009356 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 164 | 164 | AY.4.2 | 0.003557 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 145 | 145 | AY.103 | 0.0009 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 130 | 130 | AY.102 | 0.003447 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 120 | 120 | AY.26 | 0.003397 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 116 | 116 | AY.33 | 0.007746 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 116 | 116 | C.38 | 0.935484 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 107 | 107 | B.1.1.70 | 0.036494 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 101 | 101 | AY.25 | 0.000607 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 89 | 89 | B.1 | 0.000815 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 87 | 87 | P.1 | 0.001371 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 84 | 84 | B.1.258.14 | 0.082353 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 79 | 83 | AY.3 | 0.000786 |
ORF1ab/nsp15A1-B | 81 | A81V | gCT | gTC | 4 | 83 | AY.3 | 0.00004 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 83 | 83 | AY.39 | 0.002051 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 75 | 75 | AY.44 | 0.000457 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 71 | 71 | B.1.1.519 | 0.002819 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 71 | 71 | B.1.243 | 0.004941 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 70 | 70 | B.1.1 | 0.00127 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 62 | 62 | B.1.351 | 0.001843 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 58 | 58 | B.1.177 | 0.000764 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 57 | 57 | B.1.526 | 0.00134 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 55 | 55 | B.1.177.7 | 0.009067 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 54 | 54 | B.1.210 | 0.115139 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 53 | 53 | AY.36 | 0.007855 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 48 | 48 | AY.8 | 0.029091 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 48 | 48 | B.4.4 | 0.90566 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 44 | 44 | AY.61 | 0.00461 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 42 | 42 | AY.20 | 0.001632 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 38 | 38 | B.1.160 | 0.001185 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 33 | 33 | AY.39.1 | 0.001307 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 32 | 32 | AY.46 | 0.003331 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 29 | 29 | B.1.177.62 | 0.034565 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 27 | 27 | B.1.517 | 0.011529 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 26 | 26 | B.1.1.284 | 0.002792 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 24 | 24 | AY.16 | 0.009112 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 24 | 24 | B.1.1.33 | 0.010101 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 21 | 21 | AY.29 | 0.000331 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 21 | 21 | B.1.1.63 | 0.008102 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 19 | 19 | B.1.1.216 | 0.016919 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 18 | 18 | AY.70 | 0.003753 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 18 | 18 | B.1.1.271 | 1 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 18 | 18 | B.1.258.17 | 0.001871 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 18 | 18 | B.1.399 | 0.034816 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 17 | 17 | AY.100 | 0.000782 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 16 | 16 | B.1.1.369 | 0.00714 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 15 | 15 | AY.118 | 0.00094 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 15 | 15 | D.2 | 0.001126 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 14 | 14 | B.1.416 | 0.017766 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 13 | 13 | AY.1 | 0.005144 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 13 | 13 | AY.110 | 0.001465 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 13 | 13 | AY.91 | 0.009496 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 12 | 12 | B.1.453 | 0.038835 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 11 | 11 | AY.98 | 0.000869 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 11 | 11 | B.1.1.306 | 0.004822 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 10 | 10 | A.1 | 0.002818 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 10 | 10 | AY.15 | 0.022222 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 10 | 10 | B.1.634 | 0.034247 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 9 | 9 | B.40 | 0.003279 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 9 | 9 | Q.8 | 0.001484 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | AY.62 | 0.003486 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | AY.7.1 | 0.000902 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | B.1.1.309 | 0.046784 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | B.1.1.368 | 0.024691 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | B | 0.000895 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | B.1.1.253 | 0.017544 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | B.1.177.73 | 0.003964 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | B.1.1.316 | 0.00555 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | B.4 | 0.013245 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | C.11 | 0.06383 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | B.1.177.56 | 0.003338 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | B.1.420 | 0.052083 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.1.263 | 0.006231 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.1.354 | 0.017544 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.565 | 0.003241 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | C.23 | 0.023256 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.177.68 | 0.045455 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.378 | 0.020548 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.422 | 0.002437 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 3 | 3 | C.36.3.1 | 0.008152 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.300 | 0.021505 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.377 | 0.002762 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.458 | 0.083333 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.258.12 | 0.015748 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | B.28 | 0.006557 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.149 | 0.016393 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.449 | 0.022727 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.461 | 0.012048 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.359 | 0.022727 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.407 | 0.035714 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.595.3 | 0.026316 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | C.1.1 | 0.076923 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp15A1-B | 81 | A81V | gCt | gTt | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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