CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 93

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B93P93PP6545PsynccAccG8116980.86066619897-19899
ORF1ab/nsp15A1-B93P93PP6545PsynccAccT811670.082614119897-19899
ORF1ab/nsp15A1-B93P93PP6545PsynccAccC811460.056720119897-19899
ORF1ab/nsp15A1-B93P93SP6545SnonsynCcaTca5858119897-19899
ORF1ab/nsp15A1-B93P93TP6545TnonsynCcaAca2020119897-19899
ORF1ab/nsp15A1-B93P93delP6545deldelCCA---1818119897-19899
ORF1ab/nsp15A1-B93P93LP6545LnonsyncCacTa870.87519897-19899
ORF1ab/nsp15A1-B93P93LP6545LnonsyncCAcTG810.12519897-19899
ORF1ab/nsp15A1-B93P93del1P6545del1delccAcc-420.519897-19899
ORF1ab/nsp15A1-B93P93del1P6545del1delCca-ca410.2519897-19899
ORF1ab/nsp15A1-B93P93del1P6545del1delCcA-cN410.2519897-19899
ORF1ab/nsp15A1-B93P93AP6545AnonsynCcaGca22119897-19899
ORF1ab/nsp15A1-B93P93del2P6545del2delCCa--a22119897-19899
ORF1ab/nsp15A1-B93P93RP6545RnonsyncCacGa22119897-19899
ORF1ab/nsp15A1-B93P93QP6545QnonsyncCacAa22119897-19899

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B93P93PccAccG698811All0.000134
ORF1ab/nsp15A1-B93P93PccAccT67811All0.000013
ORF1ab/nsp15A1-B93P93PccAccC46811All0.000009
ORF1ab/nsp15A1-B93P93PccAccG339343B.1.1.70.000303
ORF1ab/nsp15A1-B93P93PccAccT4343B.1.1.70.000004
ORF1ab/nsp15A1-B93P93SCcaTca5858All0.000011
ORF1ab/nsp15A1-B93P93PccAccG4055AY.40.000062
ORF1ab/nsp15A1-B93P93PccAccT1255AY.40.000019
ORF1ab/nsp15A1-B93P93PccAccC355AY.40.000005
ORF1ab/nsp15A1-B93P93PccAccG5353AY.260.0015
ORF1ab/nsp15A1-B93P93PccAccG4546AY.30.000448
ORF1ab/nsp15A1-B93P93PccAccC146AY.30.00001
ORF1ab/nsp15A1-B93P93PccAccG3838AY.60.001563
ORF1ab/nsp15A1-B93P93PccAccT3131B.1.2941
ORF1ab/nsp15A1-B93P93PccAccC2729B.1.10.00049
ORF1ab/nsp15A1-B93P93PccAccG129B.1.10.000018
ORF1ab/nsp15A1-B93P93PccAccT129B.1.10.000018
ORF1ab/nsp15A1-B93P93PccAccG2929B.1.177.190.041488
ORF1ab/nsp15A1-B93P93PccAccG2628AY.440.000158
ORF1ab/nsp15A1-B93P93PccAccC228AY.440.000012
ORF1ab/nsp15A1-B93P93TCcaAca2020All0.000004
ORF1ab/nsp15A1-B93P93delCCA---1818All0.000003
ORF1ab/nsp15A1-B93P93PccAccG1617AY.250.000096
ORF1ab/nsp15A1-B93P93PccAccC117AY.250.000006
ORF1ab/nsp15A1-B93P93PccAccT817B.10.000073
ORF1ab/nsp15A1-B93P93PccAccG817B.10.000073
ORF1ab/nsp15A1-B93P93PccAccC117B.10.000009
ORF1ab/nsp15A1-B93P93PccAccG1313AY.430.000058
ORF1ab/nsp15A1-B93P93PccAccG1212B.1.1600.000374
ORF1ab/nsp15A1-B93P93SCcaTca1010AY.200.000389
ORF1ab/nsp15A1-B93P93PccAccG810B.1.617.20.00003
ORF1ab/nsp15A1-B93P93PccAccC110B.1.617.20.000004
ORF1ab/nsp15A1-B93P93PccAccT110B.1.617.20.000004
ORF1ab/nsp15A1-B93P93PccAccG99AY.1110.001648
ORF1ab/nsp15A1-B93P93LcCacTa78All0.000001
ORF1ab/nsp15A1-B93P93LcCAcTG18All0
ORF1ab/nsp15A1-B93P93SCcaTca88AY.40.000012
ORF1ab/nsp15A1-B93P93PccAccG77AY.1030.000043
ORF1ab/nsp15A1-B93P93PccAccC66B.1.6210.000531
ORF1ab/nsp15A1-B93P93PccAccG55B.1.2410.004058
ORF1ab/nsp15A1-B93P93PccAccG35P.1.150.000697
ORF1ab/nsp15A1-B93P93PccAccC25P.1.150.000465
ORF1ab/nsp15A1-B93P93del1ccAcc-24All0
ORF1ab/nsp15A1-B93P93del1Cca-ca14All0
ORF1ab/nsp15A1-B93P93del1CcA-cN14All0
ORF1ab/nsp15A1-B93P93PccAccG44AY.1160.001147
ORF1ab/nsp15A1-B93P93SCcaTca44AY.250.000024
ORF1ab/nsp15A1-B93P93PccAccT44AY.700.000834
ORF1ab/nsp15A1-B93P93PccAccG44B.1.1.5190.000159
ORF1ab/nsp15A1-B93P93PccAccG44B.1.1770.000053
ORF1ab/nsp15A1-B93P93PccAccG44B.1.20.000035
ORF1ab/nsp15A1-B93P93SCcaTca44B.1.4260.004036
ORF1ab/nsp15A1-B93P93TCcaAca33AY.430.000013
ORF1ab/nsp15A1-B93P93PccAccG33AY.50.000062
ORF1ab/nsp15A1-B93P93TCcaAca33B.10.000027
ORF1ab/nsp15A1-B93P93delCCA---33B.1.1.70.000003
ORF1ab/nsp15A1-B93P93PccAccG33B.1.177.70.000495
ORF1ab/nsp15A1-B93P93SCcaTca33B.1.20.000026
ORF1ab/nsp15A1-B93P93PccAccT33B.1.3510.000089
ORF1ab/nsp15A1-B93P93SCcaTca33B.1.5250.000339
ORF1ab/nsp15A1-B93P93PccAccG33B.1.5260.000071
ORF1ab/nsp15A1-B93P93delCCA---220.111111
ORF1ab/nsp15A1-B93P93SCcaTca220.111111
ORF1ab/nsp15A1-B93P93del2CCa--a22All0
ORF1ab/nsp15A1-B93P93QcCacAa22All0
ORF1ab/nsp15A1-B93P93RcCacGa22All0
ORF1ab/nsp15A1-B93P93ACcaGca22All0
ORF1ab/nsp15A1-B93P93SCcaTca22AY.1170.000169
ORF1ab/nsp15A1-B93P93TCcaAca22AY.420.00008
ORF1ab/nsp15A1-B93P93delCCA---22AY.430.000009
ORF1ab/nsp15A1-B93P93SCcaTca22AY.440.000012
ORF1ab/nsp15A1-B93P93PccAccG22AY.450.000243
ORF1ab/nsp15A1-B93P93PccAccG22AY.99.20.000184
ORF1ab/nsp15A1-B93P93SCcaTca22B.10.000018
ORF1ab/nsp15A1-B93P93PccAccG22B.1.1.2160.001781
ORF1ab/nsp15A1-B93P93SCcaTca22B.1.1.5190.000079
ORF1ab/nsp15A1-B93P93SCcaTca22B.1.1.70.000002
ORF1ab/nsp15A1-B93P93PccAccG22B.1.3110.000549
ORF1ab/nsp15A1-B93P93TCcaAca11A0.000387
ORF1ab/nsp15A1-B93P93PccAccG11AY.1000.000046
ORF1ab/nsp15A1-B93P93SCcaTca11AY.1020.000027
ORF1ab/nsp15A1-B93P93PccAccG11AY.1020.000027
ORF1ab/nsp15A1-B93P93TCcaAca11AY.1130.000142
ORF1ab/nsp15A1-B93P93PccAccG11AY.1170.000085
ORF1ab/nsp15A1-B93P93TCcaAca11AY.1210.000135
ORF1ab/nsp15A1-B93P93SCcaTca11AY.230.00007
ORF1ab/nsp15A1-B93P93PccAccG11AY.230.00007
ORF1ab/nsp15A1-B93P93LcCacTa11AY.250.000006
ORF1ab/nsp15A1-B93P93SCcaTca11AY.290.000016
ORF1ab/nsp15A1-B93P93SCcaTca11AY.3.10.000085
ORF1ab/nsp15A1-B93P93TCcaAca11AY.330.000067
ORF1ab/nsp15A1-B93P93SCcaTca11AY.360.000148
ORF1ab/nsp15A1-B93P93PccAccG11AY.390.000025
ORF1ab/nsp15A1-B93P93LcCacTa11AY.40.000002
ORF1ab/nsp15A1-B93P93TCcaAca11AY.40.000002
ORF1ab/nsp15A1-B93P93TCcaAca11AY.4.20.000022
ORF1ab/nsp15A1-B93P93SCcaTca11AY.4.20.000022
ORF1ab/nsp15A1-B93P93SCcaTca11AY.430.000004
ORF1ab/nsp15A1-B93P93LcCacTa11AY.430.000004
ORF1ab/nsp15A1-B93P93delCCA---11AY.440.000006
ORF1ab/nsp15A1-B93P93LcCAcTG11AY.440.000006
ORF1ab/nsp15A1-B93P93SCcaTca11AY.46.40.000165
ORF1ab/nsp15A1-B93P93TCcaAca11AY.520.000814
ORF1ab/nsp15A1-B93P93PccAccG11AY.610.000105
ORF1ab/nsp15A1-B93P93SCcaTca11AY.660.00107
ORF1ab/nsp15A1-B93P93SCcaTca11AY.90.000068
ORF1ab/nsp15A1-B93P93TCcaAca11B0.000128
ORF1ab/nsp15A1-B93P93delCCA---11B.10.000009
ORF1ab/nsp15A1-B93P93RcCacGa11B.10.000009
ORF1ab/nsp15A1-B93P93QcCacAa11B.10.000009
ORF1ab/nsp15A1-B93P93ACcaGca11B.10.000009
ORF1ab/nsp15A1-B93P93delCCA---11B.1.10.000018
ORF1ab/nsp15A1-B93P93ACcaGca11B.1.10.000018
ORF1ab/nsp15A1-B93P93PccAccC11B.1.1.1610.003534
ORF1ab/nsp15A1-B93P93PccAccG11B.1.1.2220.000204
ORF1ab/nsp15A1-B93P93QcCacAa11B.1.1.3000.010753
ORF1ab/nsp15A1-B93P93PccAccG11B.1.1.3180.000302
ORF1ab/nsp15A1-B93P93TCcaAca11B.1.1.3340.016393
ORF1ab/nsp15A1-B93P93LcCacTa11B.1.1.4320.001266
ORF1ab/nsp15A1-B93P93PccAccG11B.1.1.4320.001266
ORF1ab/nsp15A1-B93P93del1CcA-cN11B.1.1.70.000001
ORF1ab/nsp15A1-B93P93TCcaAca11B.1.1.70.000001
ORF1ab/nsp15A1-B93P93delCCA---11B.1.1.700.000341
ORF1ab/nsp15A1-B93P93delCCA---11B.1.1770.000013
ORF1ab/nsp15A1-B93P93SCcaTca11B.1.1770.000013
ORF1ab/nsp15A1-B93P93PccAccG11B.1.177.150.000631
ORF1ab/nsp15A1-B93P93PccAccT11B.1.177.730.000566
ORF1ab/nsp15A1-B93P93delCCA---11B.1.20.000009
ORF1ab/nsp15A1-B93P93del2CCa--a11B.1.20.000009
ORF1ab/nsp15A1-B93P93delCCA---11B.1.2580.000067
ORF1ab/nsp15A1-B93P93TCcaAca11B.1.3010.005917
ORF1ab/nsp15A1-B93P93delCCA---11B.1.3510.00003
ORF1ab/nsp15A1-B93P93PccAccT11B.1.390.003906
ORF1ab/nsp15A1-B93P93RcCacGa11B.1.3960.000706
ORF1ab/nsp15A1-B93P93PccAccG11B.1.4220.000812
ORF1ab/nsp15A1-B93P93PccAccC11B.1.4290.000024
ORF1ab/nsp15A1-B93P93LcCacTa11B.1.4290.000024
ORF1ab/nsp15A1-B93P93SCcaTca11B.1.5640.000426
ORF1ab/nsp15A1-B93P93LcCacTa11B.1.5900.004545
ORF1ab/nsp15A1-B93P93delCCA---11B.1.5960.000087
ORF1ab/nsp15A1-B93P93del1ccAcc-11B.1.5960.000087
ORF1ab/nsp15A1-B93P93SCcaTca11B.1.617.20.000004
ORF1ab/nsp15A1-B93P93del1Cca-ca11B.1.617.20.000004
ORF1ab/nsp15A1-B93P93del1ccAcc-11B.1.6200.000946
ORF1ab/nsp15A1-B93P93TCcaAca11B.1.6230.000536
ORF1ab/nsp15A1-B93P93delCCA---11B.1.6300.005236
ORF1ab/nsp15A1-B93P93LcCacTa11D.20.000075
ORF1ab/nsp15A1-B93P93PccAccG11P.10.000016
ORF1ab/nsp15A1-B93P93del2CCa--a11P.10.000016
ORF1ab/nsp15A1-B93P93delCCA---11P.1.150.000232
ORF1ab/nsp15A1-B93P93PccAccT11P.1.170.000162
ORF1ab/nsp15A1-B93P93SCcaTca11P.20.000187
ORF1ab/nsp15A1-B93P93PccAccG11Q.30.000145