CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 84 | V84V | V6536V | syn | gtG | gtT | 10956 | 10465 | 0.955184 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84V | V6536V | syn | gtG | gtA | 10956 | 389 | 0.0355057 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84V | V6536V | syn | gtG | gtC | 10956 | 102 | 0.00930997 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84L | V6536L | nonsyn | Gtg | Ttg | 141 | 129 | 0.914894 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84L | V6536L | nonsyn | Gtg | Ctg | 141 | 12 | 0.0851064 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84M | V6536M | nonsyn | Gtg | Atg | 81 | 81 | 1 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84A | V6536A | nonsyn | gTg | gCg | 22 | 21 | 0.954545 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84A | V6536A | nonsyn | gTG | gCT | 22 | 1 | 0.0454545 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84del | V6536del | del | GTG | --- | 15 | 15 | 1 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84del1 | V6536del1 | del | Gtg | -tg | 6 | 3 | 0.5 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84del1 | V6536del1 | del | gtG | gt- | 6 | 2 | 0.333333 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84del1 | V6536del1 | del | gTG | gC- | 6 | 1 | 0.166667 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84G | V6536G | nonsyn | gTg | gGg | 2 | 2 | 1 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84E | V6536E | nonsyn | gTg | gAg | 2 | 2 | 1 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84K | V6536K | nonsyn | GTG | AAA | 1 | 1 | 1 | 19870-19872 |
ORF1ab/nsp15A1-B | 84 | V84Q | V6536Q | nonsyn | GTg | CAg | 1 | 1 | 1 | 19870-19872 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10465 | 10956 | All | 0.002002 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 389 | 10956 | All | 0.000074 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 102 | 10956 | All | 0.00002 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2251 | 2251 | AY.98.1 | 0.109018 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1090 | 1090 | B.1.588 | 0.991811 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 832 | 1006 | B.1.1.7 | 0.000745 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 171 | 1006 | B.1.1.7 | 0.000153 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 3 | 1006 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 827 | 844 | AY.4 | 0.001287 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 12 | 844 | AY.4 | 0.000019 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 5 | 844 | AY.4 | 0.000008 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 469 | 528 | B.1.2 | 0.00413 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 58 | 528 | B.1.2 | 0.000511 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 528 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 522 | 522 | B.1.587 | 0.990512 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 397 | 407 | B.1 | 0.003636 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 7 | 407 | B.1 | 0.000064 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 3 | 407 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 361 | 361 | B.1.517 | 0.154142 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 268 | 275 | B.1.617.2 | 0.001009 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 5 | 275 | B.1.617.2 | 0.000019 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 2 | 275 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 259 | 259 | AY.39.1 | 0.01026 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 220 | 222 | AY.43 | 0.000975 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 222 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 222 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 199 | 199 | P.2 | 0.037141 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 163 | 163 | AY.103 | 0.001012 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 142 | 142 | B.1.177.12 | 0.021541 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 129 | 141 | All | 0.000025 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ctg | 12 | 141 | All | 0.000002 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 118 | 118 | AY.33 | 0.00788 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 104 | 112 | AY.44 | 0.000633 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 7 | 112 | AY.44 | 0.000043 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 112 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 74 | 112 | B.1.1.519 | 0.002939 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 38 | 112 | B.1.1.519 | 0.001509 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 104 | 112 | P.1 | 0.001638 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 6 | 112 | P.1 | 0.000095 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 2 | 112 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 96 | 100 | B.1.1 | 0.001742 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 4 | 100 | B.1.1 | 0.000073 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 83 | 83 | B.1.351.2 | 0.025113 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 83 | 83 | P.1.15 | 0.019284 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 81 | 81 | All | 0.000015 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 68 | 72 | B.1.311 | 0.018671 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 72 | B.1.311 | 0.000549 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 2 | 72 | B.1.311 | 0.000549 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 68 | 68 | B.1.1.284 | 0.007303 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 59 | 63 | AY.25 | 0.000355 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 4 | 63 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 61 | 61 | B.1.595 | 0.015919 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 60 | 61 | P.1.14 | 0.002868 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 61 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 52 | 53 | AY.39 | 0.001285 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 53 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 48 | 52 | AY.102 | 0.001273 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 2 | 52 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 52 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 51 | 52 | AY.3 | 0.000507 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 52 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 50 | 50 | B.1.177.62 | 0.059595 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 48 | 49 | AY.42 | 0.001931 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 49 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 48 | 48 | AY.100 | 0.002208 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 29 | 44 | B.1.177 | 0.000382 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 14 | 44 | B.1.177 | 0.000184 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 44 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 42 | 42 | B.1.526 | 0.000987 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 34 | 40 | B.1.160 | 0.00106 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 6 | 40 | B.1.160 | 0.000187 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 40 | 40 | B.1.564 | 0.017036 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 20 | 37 | B.1.221 | 0.001421 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 17 | 37 | B.1.221 | 0.001208 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 34 | 34 | AY.53 | 0.009776 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 31 | 31 | AY.39 | 0.000766 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 31 | 31 | B.1.468 | 0.177143 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 30 | 30 | AY.7 | 0.00588 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 29 | 29 | B.1.240 | 0.006251 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 26 | 26 | B.1.588.1 | 1 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 24 | 24 | AY.119 | 0.000847 |
ORF1ab/nsp15A1-B | 84 | V84A | gTg | gCg | 21 | 22 | All | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84A | gTG | gCT | 1 | 22 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 21 | 21 | AY.9.2 | 0.000771 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 21 | 21 | B.1.1.214 | 0.001165 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 18 | 21 | B.1.429 | 0.000424 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 21 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 21 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 21 | 21 | Q.1 | 0.002653 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 20 | 20 | B.1.36.18 | 0.008403 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 17 | 19 | AY.20 | 0.000661 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 19 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 19 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 18 | 19 | AY.9 | 0.001217 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 19 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 17 | 18 | B.1.1.33 | 0.007155 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 18 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 18 | 18 | B.1.36 | 0.002626 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 15 | 17 | AY.23 | 0.001046 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 17 | AY.23 | 0.000139 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 17 | 17 | B.1.1.37 | 0.003279 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 17 | 17 | B.1.111 | 0.019976 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 16 | 17 | B.1.351 | 0.000476 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 17 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 15 | 15 | All | 0.000003 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10 | 14 | AY.120 | 0.000372 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 3 | 14 | AY.120 | 0.000112 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 14 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 14 | 14 | AY.34 | 0.001358 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 13 | 14 | AY.6 | 0.000535 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 14 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10 | 12 | AY.29 | 0.000158 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 12 | AY.29 | 0.000032 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10 | 11 | AY.109 | 0.007396 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 11 | AY.109 | 0.00074 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 10 | 11 | AY.4 | 0.000016 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ctg | 1 | 11 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 11 | 11 | AY.41 | 0.003233 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp15A1-B | 84 | V84A | gTg | gCg | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ctg | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 10 | AY.5 | 0.000145 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 3 | 10 | AY.5 | 0.000062 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10 | 10 | B.1.1.58 | 0.053763 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 9 | 9 | AY.114 | 0.00208 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 9 | 9 | AY.36 | 0.001334 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 9 | 9 | B.1.128 | 0.005718 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 9 | 9 | B.1.177.35 | 0.00622 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 9 | 9 | B.1.409 | 0.007031 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 9 | B.1.617.1 | 0.001032 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 9 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 9 | P.1.17 | 0.001132 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 9 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 9 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 8 | A.1 | 0.002255 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 8 | B.1.1.286 | 0.023188 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 8 | B.1.400 | 0.003432 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 8 | 8 | B.1.567 | 0.026667 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 7 | AY.38 | 0.003495 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp15A1-B | 84 | V84A | gTg | gCg | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 7 | B.1.1.305 | 0.027027 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 7 | B.1.258 | 0.000399 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 7 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 84 | V84del1 | Gtg | -tg | 3 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 84 | V84del1 | gtG | gt- | 2 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84del1 | gTG | gC- | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 6 | AY.26 | 0.000085 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 6 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 6 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | AY.35 | 0.001398 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 6 | AY.4.2 | 0.000108 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 6 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | B.1.439 | 0.035503 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 6 | B.1.621 | 0.000266 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 2 | 6 | B.1.621 | 0.000177 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 6 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | B.1.160.7 | 0.010395 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | B.1.279 | 0.002568 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 5 | 5 | B.1.428 | 0.005102 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | AY.99.1 | 0.006211 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B.1.1.486 | 0.006309 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 3 | 4 | B.1.177.54 | 0.001819 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 4 | B.1.177.54 | 0.000606 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B.1.258.3 | 0.0067 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 4 | 4 | B.1.399 | 0.007737 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 4 | 4 | B.4.8 | 0.285714 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 4 | C.37 | 0.000348 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 4 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 3 | AY.48 | 0.00093 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 3 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 2 | 3 | B.1.1.28 | 0.000622 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 3 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.1.329 | 0.011538 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.177.9 | 0.003995 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.36.35 | 0.007812 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | B.29 | 0.010526 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp15A1-B | 84 | V84E | gTg | gAg | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84G | gTg | gGg | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.115 | 0.010417 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ctg | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 2 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 2 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 2 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 2 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 2 | B.1.177.51 | 0.009132 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.205 | 0.047619 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.340 | 0.008584 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 2 | 2 | B.1.362.2 | 0.009434 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.491 | 0.105263 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp15A1-B | 84 | V84A | gTg | gCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 2 | 2 | B.4.1 | 0.037736 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | A.11 | 0.058824 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp15A1-B | 84 | V84Q | GTg | CAg | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84K | GTG | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp15A1-B | 84 | V84G | gTg | gGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp15A1-B | 84 | V84G | gTg | gGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84del1 | Gtg | -tg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 84 | V84K | GTG | AAA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 84 | V84E | gTg | gAg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84A | gTG | gCT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.160 | 0.02381 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp15A1-B | 84 | V84A | gTg | gCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | B.1.177.78 | 0.009709 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp15A1-B | 84 | V84del1 | gTG | gC- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 84 | V84E | gTg | gAg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84del1 | Gtg | -tg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp15A1-B | 84 | V84del1 | gtG | gt- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.387 | 0.04 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp15A1-B | 84 | V84del1 | Gtg | -tg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 84 | V84L | Gtg | Ttg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 84 | V84M | Gtg | Atg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 84 | V84del1 | gtG | gt- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84Q | GTg | CAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 84 | V84A | gTg | gCg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtA | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 84 | V84del | GTG | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtC | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 84 | V84V | gtG | gtT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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