CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 73

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B73N73NN6525NsynaaTaaC5582955829119837-19839
ORF1ab/nsp15A1-B73N73TN6525TnonsynaAtaCt1231220.9918719837-19839
ORF1ab/nsp15A1-B73N73TN6525TnonsynaATaCC12310.0081300819837-19839
ORF1ab/nsp15A1-B73N73DN6525DnonsynAatGat69680.98550719837-19839
ORF1ab/nsp15A1-B73N73DN6525DnonsynAaTGaC6910.014492819837-19839
ORF1ab/nsp15A1-B73N73SN6525SnonsynaAtaGt46440.95652219837-19839
ORF1ab/nsp15A1-B73N73SN6525SnonsynaATaGC4620.043478319837-19839
ORF1ab/nsp15A1-B73N73YN6525YnonsynAatTat33320.96969719837-19839
ORF1ab/nsp15A1-B73N73YN6525YnonsynAaTTaC3310.03030319837-19839
ORF1ab/nsp15A1-B73N73delN6525deldelAAT---2828119837-19839
ORF1ab/nsp15A1-B73N73HN6525HnonsynAatCat23210.91304319837-19839
ORF1ab/nsp15A1-B73N73HN6525HnonsynAaTCaC2320.086956519837-19839
ORF1ab/nsp15A1-B73N73KN6525KnonsynaaTaaA640.66666719837-19839
ORF1ab/nsp15A1-B73N73KN6525KnonsynaaTaaG620.33333319837-19839
ORF1ab/nsp15A1-B73N73del1N6525del1delaaTaa-420.519837-19839
ORF1ab/nsp15A1-B73N73del1N6525del1delAat-at410.2519837-19839
ORF1ab/nsp15A1-B73N73del1N6525del1delAAt-Tt410.2519837-19839
ORF1ab/nsp15A1-B73N73QN6525QnonsynAaTCaA22119837-19839
ORF1ab/nsp15A1-B73N73GN6525GnonsynAAtGGt11119837-19839
ORF1ab/nsp15A1-B73N73IN6525InonsynaAtaTt11119837-19839

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B73N73NaaTaaC5582955829All0.010678
ORF1ab/nsp15A1-B73N73NaaTaaC2464124641B.1.1.5190.978516
ORF1ab/nsp15A1-B73N73NaaTaaC1106611066R.10.99604
ORF1ab/nsp15A1-B73N73NaaTaaC48394839B.1.1.2220.987148
ORF1ab/nsp15A1-B73N73NaaTaaC38293829B.1.10.069462
ORF1ab/nsp15A1-B73N73NaaTaaC23212321B.1.1.3170.955537
ORF1ab/nsp15A1-B73N73NaaTaaC12941294B.1.1.2910.960653
ORF1ab/nsp15A1-B73N73NaaTaaC10481048B.1.1.3160.969473
ORF1ab/nsp15A1-B73N73NaaTaaC812812B.10.007438
ORF1ab/nsp15A1-B73N73NaaTaaC642642B.1.1.4640.945508
ORF1ab/nsp15A1-B73N73NaaTaaC520520B.1.1.2880.996169
ORF1ab/nsp15A1-B73N73NaaTaaC472472B.1.1.2890.983333
ORF1ab/nsp15A1-B73N73NaaTaaC357357B.1.1.2200.663569
ORF1ab/nsp15A1-B73N73NaaTaaC332332B.1.1.40.988095
ORF1ab/nsp15A1-B73N73NaaTaaC327327AW.10.996951
ORF1ab/nsp15A1-B73N73NaaTaaC265265B.1.1.70.000237
ORF1ab/nsp15A1-B73N73NaaTaaC231231B.1.1.740.99569
ORF1ab/nsp15A1-B73N73NaaTaaC206206B.1.4260.207871
ORF1ab/nsp15A1-B73N73NaaTaaC203203AY.420.008167
ORF1ab/nsp15A1-B73N73NaaTaaC183183B.1.1.5210.97861
ORF1ab/nsp15A1-B73N73NaaTaaC154154B.1.1.5180.974684
ORF1ab/nsp15A1-B73N73NaaTaaC147147B.1.1.5171
ORF1ab/nsp15A1-B73N73TaAtaCt122123All0.000023
ORF1ab/nsp15A1-B73N73TaATaCC1123All0
ORF1ab/nsp15A1-B73N73NaaTaaC113113B.1.1.30.982609
ORF1ab/nsp15A1-B73N73NaaTaaC111111B.1.1.3220.973684
ORF1ab/nsp15A1-B73N73NaaTaaC111111B.1.1.50.925
ORF1ab/nsp15A1-B73N73NaaTaaC9898AS.10.933333
ORF1ab/nsp15A1-B73N73NaaTaaC9494B.1.1.751
ORF1ab/nsp15A1-B73N73NaaTaaC9090B.1.1.2210.909091
ORF1ab/nsp15A1-B73N73NaaTaaC8282B.1.1.1581
ORF1ab/nsp15A1-B73N73DAatGat6869All0.000013
ORF1ab/nsp15A1-B73N73DAaTGaC169All0
ORF1ab/nsp15A1-B73N73NaaTaaC6969R.21
ORF1ab/nsp15A1-B73N73TaAtaCt6767AY.430.000297
ORF1ab/nsp15A1-B73N73NaaTaaC6464AS.21
ORF1ab/nsp15A1-B73N73NaaTaaC6060B.1.1.2240.857143
ORF1ab/nsp15A1-B73N73NaaTaaC5959B.1.1.4590.907692
ORF1ab/nsp15A1-B73N73NaaTaaC5454B.1.1.2900.981818
ORF1ab/nsp15A1-B73N73NaaTaaC4848B.1.20.000423
ORF1ab/nsp15A1-B73N73SaAtaGt4446All0.000008
ORF1ab/nsp15A1-B73N73SaATaGC246All0
ORF1ab/nsp15A1-B73N73NaaTaaC4444B.1.1.4181
ORF1ab/nsp15A1-B73N73DAatGat3838AY.440.000231
ORF1ab/nsp15A1-B73N73NaaTaaC3737B.1.1.1610.130742
ORF1ab/nsp15A1-B73N73NaaTaaC3636B.1.1.5250.196721
ORF1ab/nsp15A1-B73N73NaaTaaC3434B.1.1.1940.168317
ORF1ab/nsp15A1-B73N73YAatTat3233All0.000006
ORF1ab/nsp15A1-B73N73YAaTTaC133All0
ORF1ab/nsp15A1-B73N73delAAT---2828All0.000005
ORF1ab/nsp15A1-B73N73NaaTaaC2828B.1.1.3520.875
ORF1ab/nsp15A1-B73N73NaaTaaC2525B.1.1.1740.084459
ORF1ab/nsp15A1-B73N73NaaTaaC2424B.1.1.3060.010522
ORF1ab/nsp15A1-B73N73NaaTaaC2424B.1.1.771
ORF1ab/nsp15A1-B73N73NaaTaaC2424B.1.3780.164384
ORF1ab/nsp15A1-B73N73HAatCat2123All0.000004
ORF1ab/nsp15A1-B73N73HAaTCaC223All0
ORF1ab/nsp15A1-B73N73NaaTaaC2020B.1.1.100.022297
ORF1ab/nsp15A1-B73N73NaaTaaC2020B.1.617.20.000075
ORF1ab/nsp15A1-B73N73NaaTaaC1919AY.98.10.00092
ORF1ab/nsp15A1-B73N73NaaTaaC1818B.1.1.280.005602
ORF1ab/nsp15A1-B73N73NaaTaaC1616B.1.160.300.047619
ORF1ab/nsp15A1-B73N73NaaTaaC1616B.1.1790.06015
ORF1ab/nsp15A1-B73N73NaaTaaC1515AY.40.000023
ORF1ab/nsp15A1-B73N73TaAtaCt1515B.10.000137
ORF1ab/nsp15A1-B73N73NaaTaaC1414B.1.4160.017766
ORF1ab/nsp15A1-B73N73SaAtaGt1313B.1.1.70.000012
ORF1ab/nsp15A1-B73N73TaAtaCt1313B.1.617.20.000049
ORF1ab/nsp15A1-B73N73NaaTaaC1111B.1.1.520.134146
ORF1ab/nsp15A1-B73N73NaaTaaC1010AY.1030.000062
ORF1ab/nsp15A1-B73N73NaaTaaC1010AY.390.000247
ORF1ab/nsp15A1-B73N73NaaTaaC1010AY.750.00056
ORF1ab/nsp15A1-B73N73NaaTaaC1010B.1.1.1100.909091
ORF1ab/nsp15A1-B73N73TaAtaCt1010B.1.1.70.000009
ORF1ab/nsp15A1-B73N73NaaTaaC1010B.1.4410.096154
ORF1ab/nsp15A1-B73N73NaaTaaC1010B.1.5960.000871
ORF1ab/nsp15A1-B73N73NaaTaaC99A.10.002537
ORF1ab/nsp15A1-B73N73NaaTaaC99AY.430.00004
ORF1ab/nsp15A1-B73N73NaaTaaC99B0.00115
ORF1ab/nsp15A1-B73N73NaaTaaC99B.1.4290.000212
ORF1ab/nsp15A1-B73N73NaaTaaC88AY.1190.000282
ORF1ab/nsp15A1-B73N73NaaTaaC88AY.440.000049
ORF1ab/nsp15A1-B73N73NaaTaaC88B.1.1.2250.057554
ORF1ab/nsp15A1-B73N73delAAT---88B.1.1.70.000007
ORF1ab/nsp15A1-B73N73NaaTaaC88B.1.1770.000105
ORF1ab/nsp15A1-B73N73NaaTaaC77B.1.1.1710.025735
ORF1ab/nsp15A1-B73N73NaaTaaC77B.1.1.3720.004821
ORF1ab/nsp15A1-B73N73NaaTaaC77B.1.4270.000353
ORF1ab/nsp15A1-B73N73KaaTaaA46All0.000001
ORF1ab/nsp15A1-B73N73KaaTaaG26All0
ORF1ab/nsp15A1-B73N73NaaTaaC66AY.250.000036
ORF1ab/nsp15A1-B73N73HAatCat66AY.30.00006
ORF1ab/nsp15A1-B73N73YAatTat66AY.3.10.000512
ORF1ab/nsp15A1-B73N73NaaTaaC66B.1.1.3110.002149
ORF1ab/nsp15A1-B73N73NaaTaaC66B.1.1600.000187
ORF1ab/nsp15A1-B73N73NaaTaaC66B.1.177.810.001136
ORF1ab/nsp15A1-B73N73NaaTaaC66B.1.5450.086957
ORF1ab/nsp15A1-B73N73NaaTaaC66B.1.5640.002555
ORF1ab/nsp15A1-B73N73NaaTaaC55AY.1170.000423
ORF1ab/nsp15A1-B73N73YAatTat45B.1.1.70.000004
ORF1ab/nsp15A1-B73N73YAaTTaC15B.1.1.70.000001
ORF1ab/nsp15A1-B73N73NaaTaaC55B.1.1.830.01355
ORF1ab/nsp15A1-B73N73NaaTaaC55B.1.1690.074627
ORF1ab/nsp15A1-B73N73NaaTaaC55B.1.5510.006452
ORF1ab/nsp15A1-B73N73HAatCat55B.1.617.20.000019
ORF1ab/nsp15A1-B73N73NaaTaaC55P.10.000079
ORF1ab/nsp15A1-B73N73del1aaTaa-24All0
ORF1ab/nsp15A1-B73N73del1AAt-Tt14All0
ORF1ab/nsp15A1-B73N73del1Aat-at14All0
ORF1ab/nsp15A1-B73N73NaaTaaC44AY.470.000124
ORF1ab/nsp15A1-B73N73NaaTaaC44AY.50.000083
ORF1ab/nsp15A1-B73N73DAatGat44B.10.000037
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.1.1210.009709
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.1.1980.005874
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.1.3700.050633
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.1.390.002039
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.1580.095238
ORF1ab/nsp15A1-B73N73SaAtaGt44B.1.2580.000266
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.3110.001098
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.4050.049383
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.5260.000094
ORF1ab/nsp15A1-B73N73NaaTaaC44B.1.6090.001918
ORF1ab/nsp15A1-B73N73SaAtaGt44B.1.617.20.000015
ORF1ab/nsp15A1-B73N73SaAtaGt44P.10.000063
ORF1ab/nsp15A1-B73N73NaaTaaC33AY.1020.00008
ORF1ab/nsp15A1-B73N73NaaTaaC33AY.30.00003
ORF1ab/nsp15A1-B73N73HAatCat33AY.3.10.000256
ORF1ab/nsp15A1-B73N73TaAtaCt23AY.440.000012
ORF1ab/nsp15A1-B73N73TaATaCC13AY.440.000006
ORF1ab/nsp15A1-B73N73NaaTaaC33AY.620.001307
ORF1ab/nsp15A1-B73N73NaaTaaC33AY.9.10.000251
ORF1ab/nsp15A1-B73N73NaaTaaC33AY.99.20.000276
ORF1ab/nsp15A1-B73N73SaAtaGt33B.10.000027
ORF1ab/nsp15A1-B73N73delAAT---33B.1.10.000054
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.1330.025424
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.2360.02069
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.310.2
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.3880.136364
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.510.005155
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.5260.010638
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.1.990.071429
ORF1ab/nsp15A1-B73N73TaAtaCt33B.1.1770.00004
ORF1ab/nsp15A1-B73N73DAatGat33B.1.20.000026
ORF1ab/nsp15A1-B73N73HAatCat33B.1.4270.000151
ORF1ab/nsp15A1-B73N73DAatGat33B.1.4270.000151
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.5090.002597
ORF1ab/nsp15A1-B73N73NaaTaaC33B.1.5300.021429
ORF1ab/nsp15A1-B73N73QAaTCaA220.111111
ORF1ab/nsp15A1-B73N73SaATaGC220.111111
ORF1ab/nsp15A1-B73N73NaaTaaC22A0.000774
ORF1ab/nsp15A1-B73N73QAaTCaA22All0
ORF1ab/nsp15A1-B73N73TaAtaCt22AY.1000.000092
ORF1ab/nsp15A1-B73N73TaAtaCt22AY.1030.000012
ORF1ab/nsp15A1-B73N73HAatCat22AY.200.000078
ORF1ab/nsp15A1-B73N73SaAtaGt22AY.230.000139
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.240.000862
ORF1ab/nsp15A1-B73N73YAatTat22AY.250.000012
ORF1ab/nsp15A1-B73N73DAatGat22AY.250.000012
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.260.000057
ORF1ab/nsp15A1-B73N73YAatTat22AY.30.00002
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.300.000791
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.330.000134
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.340.000194
ORF1ab/nsp15A1-B73N73YAatTat22AY.390.000049
ORF1ab/nsp15A1-B73N73YAatTat22AY.4.30.001684
ORF1ab/nsp15A1-B73N73SaAtaGt22AY.430.000009
ORF1ab/nsp15A1-B73N73delAAT---22AY.430.000009
ORF1ab/nsp15A1-B73N73KaaTaaA12AY.430.000004
ORF1ab/nsp15A1-B73N73KaaTaaG12AY.430.000004
ORF1ab/nsp15A1-B73N73YAatTat22AY.440.000012
ORF1ab/nsp15A1-B73N73DAatGat22AY.50.000041
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.550.001835
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.670.000929
ORF1ab/nsp15A1-B73N73NaaTaaC22AY.920.000575
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.1340.022727
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.1600.047619
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.2540.022472
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.2580.006515
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.2740.010101
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.2770.001517
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.3040.005618
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.330.000842
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.370.000386
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.4440.285714
ORF1ab/nsp15A1-B73N73DAatGat22B.1.1.70.000002
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.1.980.037037
ORF1ab/nsp15A1-B73N73DAatGat22B.1.1770.000026
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.177.70.00033
ORF1ab/nsp15A1-B73N73delAAT---22B.1.20.000018
ORF1ab/nsp15A1-B73N73del1AAt-Tt12B.1.20.000009
ORF1ab/nsp15A1-B73N73del1aaTaa-12B.1.20.000009
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.2060.001631
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.2350.005038
ORF1ab/nsp15A1-B73N73SaAtaGt22B.1.2400.000431
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.3510.000059
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.3670.001585
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.3990.003868
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.466.20.000782
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.5250.000226
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.5330.019231
ORF1ab/nsp15A1-B73N73NaaTaaC22B.1.780.017094
ORF1ab/nsp15A1-B73N73NaaTaaC22C.36.30.001134
ORF1ab/nsp15A1-B73N73NaaTaaC22P.1.170.000324
ORF1ab/nsp15A1-B73N73NaaTaaC11A.2.20.001689
ORF1ab/nsp15A1-B73N73NaaTaaC11A.2.50.000499
ORF1ab/nsp15A1-B73N73NaaTaaC11AL.10.012987
ORF1ab/nsp15A1-B73N73IaAtaTt11All0
ORF1ab/nsp15A1-B73N73GAAtGGt11All0
ORF1ab/nsp15A1-B73N73NaaTaaC11AU.30.00211
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.1000.000046
ORF1ab/nsp15A1-B73N73YAatTat11AY.1030.000006
ORF1ab/nsp15A1-B73N73SaAtaGt11AY.1030.000006
ORF1ab/nsp15A1-B73N73DAatGat11AY.1030.000006
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.1080.001103
ORF1ab/nsp15A1-B73N73DAatGat11AY.1190.000035
ORF1ab/nsp15A1-B73N73YAatTat11AY.1210.000135
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.140.000088
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.170.008197
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.20.000356
ORF1ab/nsp15A1-B73N73DAatGat11AY.200.000039
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.200.000039
ORF1ab/nsp15A1-B73N73YAatTat11AY.230.00007
ORF1ab/nsp15A1-B73N73DAatGat11AY.230.00007
ORF1ab/nsp15A1-B73N73TaAtaCt11AY.250.000006
ORF1ab/nsp15A1-B73N73YAatTat11AY.290.000016
ORF1ab/nsp15A1-B73N73DAatGat11AY.30.00001
ORF1ab/nsp15A1-B73N73SaAtaGt11AY.30.00001
ORF1ab/nsp15A1-B73N73NaaTaaC11AY.3.10.000085
ORF1ab/nsp15A1-B73N73YAatTat11AY.300.000396
ORF1ab/nsp15A1-B73N73YAatTat11AY.350.000233
ORF1ab/nsp15A1-B73N73DAatGat11AY.360.000148
ORF1ab/nsp15A1-B73N73DAatGat11AY.39.10.00004
ORF1ab/nsp15A1-B73N73SaAtaGt11AY.40.000002
ORF1ab/nsp15A1-B73N73DAatGat11AY.40.000002
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