CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 66

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B66V66LV6518LnonsynGtaTta755775000.99245719816-19818
ORF1ab/nsp15A1-B66V66LV6518LnonsynGtaCta7557570.0075426819816-19818
ORF1ab/nsp15A1-B66V66IV6518InonsynGtaAta436436119816-19818
ORF1ab/nsp15A1-B66V66VV6518VsyngtAgtG3152910.9238119816-19818
ORF1ab/nsp15A1-B66V66VV6518VsyngtAgtC315170.053968319816-19818
ORF1ab/nsp15A1-B66V66VV6518VsyngtAgtT31570.022222219816-19818
ORF1ab/nsp15A1-B66V66AV6518AnonsyngTagCa5858119816-19818
ORF1ab/nsp15A1-B66V66delV6518deldelGTA---3737119816-19818
ORF1ab/nsp15A1-B66V66EV6518EnonsyngTagAa22119816-19818
ORF1ab/nsp15A1-B66V66del1V6518del1delgtAgt-210.519816-19818
ORF1ab/nsp15A1-B66V66del1V6518del1delGta-ta210.519816-19818
ORF1ab/nsp15A1-B66V66DV6518DnonsyngTAgAC11119816-19818
ORF1ab/nsp15A1-B66V66CV6518CnonsynGTATGC11119816-19818

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B66V66LGtaTta75007557All0.001434
ORF1ab/nsp15A1-B66V66LGtaCta577557All0.000011
ORF1ab/nsp15A1-B66V66LGtaTta13411341AY.40.002087
ORF1ab/nsp15A1-B66V66LGtaTta883885B.1.1.70.00079
ORF1ab/nsp15A1-B66V66LGtaCta2885B.1.1.70.000002
ORF1ab/nsp15A1-B66V66LGtaTta518531B.1.617.20.00195
ORF1ab/nsp15A1-B66V66LGtaCta13531B.1.617.20.000049
ORF1ab/nsp15A1-B66V66LGtaTta472472B.1.4290.011106
ORF1ab/nsp15A1-B66V66IGtaAta436436All0.000083
ORF1ab/nsp15A1-B66V66VgtAgtG291315All0.000056
ORF1ab/nsp15A1-B66V66VgtAgtC17315All0.000003
ORF1ab/nsp15A1-B66V66VgtAgtT7315All0.000001
ORF1ab/nsp15A1-B66V66LGtaTta296296AY.430.001311
ORF1ab/nsp15A1-B66V66LGtaTta272272AY.850.11619
ORF1ab/nsp15A1-B66V66LGtaTta227227B.1.4690.819495
ORF1ab/nsp15A1-B66V66LGtaTta219219B.1.20.001928
ORF1ab/nsp15A1-B66V66LGtaTta212212AY.4.20.004598
ORF1ab/nsp15A1-B66V66LGtaTta198199AY.30.001969
ORF1ab/nsp15A1-B66V66LGtaCta1199AY.30.00001
ORF1ab/nsp15A1-B66V66LGtaTta168169B.10.001539
ORF1ab/nsp15A1-B66V66LGtaCta1169B.10.000009
ORF1ab/nsp15A1-B66V66LGtaTta162162B.1.1770.002133
ORF1ab/nsp15A1-B66V66LGtaTta146149B.1.3510.00434
ORF1ab/nsp15A1-B66V66LGtaCta3149B.1.3510.000089
ORF1ab/nsp15A1-B66V66IGtaAta139139AY.40.000216
ORF1ab/nsp15A1-B66V66LGtaTta9494AY.250.000565
ORF1ab/nsp15A1-B66V66LGtaTta9091AY.440.000548
ORF1ab/nsp15A1-B66V66LGtaCta191AY.440.000006
ORF1ab/nsp15A1-B66V66LGtaTta9090B.1.5900.409091
ORF1ab/nsp15A1-B66V66LGtaTta8989AY.1000.004095
ORF1ab/nsp15A1-B66V66LGtaTta8383B.1.1310.72807
ORF1ab/nsp15A1-B66V66LGtaTta8181AY.5.40.022413
ORF1ab/nsp15A1-B66V66LGtaTta7980B.1.10.001433
ORF1ab/nsp15A1-B66V66LGtaCta180B.1.10.000018
ORF1ab/nsp15A1-B66V66IGtaAta7171AY.30.000706
ORF1ab/nsp15A1-B66V66LGtaTta6969AY.1020.001829
ORF1ab/nsp15A1-B66V66VgtAgtG6667B.1.1770.000869
ORF1ab/nsp15A1-B66V66VgtAgtT167B.1.1770.000013
ORF1ab/nsp15A1-B66V66LGtaTta6363P.10.000993
ORF1ab/nsp15A1-B66V66LGtaTta5959B.1.595.10.345029
ORF1ab/nsp15A1-B66V66AgTagCa5858All0.000011
ORF1ab/nsp15A1-B66V66LGtaTta5050AY.50.001032
ORF1ab/nsp15A1-B66V66VgtAgtG5050B.1.258.150.943396
ORF1ab/nsp15A1-B66V66IGtaAta4949B.1.177.190.0701
ORF1ab/nsp15A1-B66V66LGtaTta4747B.1.360.006857
ORF1ab/nsp15A1-B66V66LGtaTta4646AY.260.001302
ORF1ab/nsp15A1-B66V66LGtaTta4444AY.1030.000273
ORF1ab/nsp15A1-B66V66IGtaAta4242B.1.10.000762
ORF1ab/nsp15A1-B66V66LGtaTta4141B.1.1.2220.008364
ORF1ab/nsp15A1-B66V66LGtaTta4040AY.390.000988
ORF1ab/nsp15A1-B66V66LGtaTta3939B.1.177.750.040583
ORF1ab/nsp15A1-B66V66LGtaTta3838AY.60.001563
ORF1ab/nsp15A1-B66V66delGTA---3737All0.000007
ORF1ab/nsp15A1-B66V66LGtaTta3636AY.98.10.001744
ORF1ab/nsp15A1-B66V66IGtaAta3636B.1.1.5190.00143
ORF1ab/nsp15A1-B66V66LGtaTta3232AY.420.001287
ORF1ab/nsp15A1-B66V66LGtaTta3232P.1.170.005176
ORF1ab/nsp15A1-B66V66LGtaTta3131R.10.00279
ORF1ab/nsp15A1-B66V66LGtaTta2727AY.330.001803
ORF1ab/nsp15A1-B66V66VgtAgtG2727B.1.617.20.000102
ORF1ab/nsp15A1-B66V66VgtAgtG2626AY.1050.01672
ORF1ab/nsp15A1-B66V66LGtaTta2525B.1.1.3160.023127
ORF1ab/nsp15A1-B66V66VgtAgtG2424AY.40.000037
ORF1ab/nsp15A1-B66V66LGtaTta2323AY.840.010061
ORF1ab/nsp15A1-B66V66LGtaTta2323B.1.6210.002036
ORF1ab/nsp15A1-B66V66LGtaTta2222B.1.177.450.008387
ORF1ab/nsp15A1-B66V66AgTagCa2121AY.1030.00013
ORF1ab/nsp15A1-B66V66LGtaTta2121B.1.160.290.088608
ORF1ab/nsp15A1-B66V66LGtaTta2121B.1.5260.000494
ORF1ab/nsp15A1-B66V66IGtaAta2020B.1.1.70.000018
ORF1ab/nsp15A1-B66V66LGtaTta2020B.1.4970.006295
ORF1ab/nsp15A1-B66V66LGtaTta1919AY.470.000591
ORF1ab/nsp15A1-B66V66LGtaTta1919B.1.1.5190.000755
ORF1ab/nsp15A1-B66V66VgtAgtG1119B.1.1.70.00001
ORF1ab/nsp15A1-B66V66VgtAgtC819B.1.1.70.000007
ORF1ab/nsp15A1-B66V66VgtAgtG1818AY.1030.000112
ORF1ab/nsp15A1-B66V66LGtaTta1818B.1.1.1300.276923
ORF1ab/nsp15A1-B66V66LGtaTta1818B.1.1.2140.000998
ORF1ab/nsp15A1-B66V66LGtaTta1818B.1.2430.001253
ORF1ab/nsp15A1-B66V66VgtAgtG1818B.1.2580.001198
ORF1ab/nsp15A1-B66V66LGtaTta1717AY.1190.0006
ORF1ab/nsp15A1-B66V66LGtaTta1717AY.750.000952
ORF1ab/nsp15A1-B66V66LGtaTta1717B.1.177.40.003588
ORF1ab/nsp15A1-B66V66LGtaTta1617B.1.5250.001811
ORF1ab/nsp15A1-B66V66LGtaCta117B.1.5250.000113
ORF1ab/nsp15A1-B66V66LGtaTta1616AY.200.000622
ORF1ab/nsp15A1-B66V66LGtaCta1616B.1.1.2910.011878
ORF1ab/nsp15A1-B66V66LGtaTta1616B.1.4270.000808
ORF1ab/nsp15A1-B66V66LGtaTta815AY.1060.002679
ORF1ab/nsp15A1-B66V66LGtaCta715AY.1060.002344
ORF1ab/nsp15A1-B66V66LGtaTta1515AY.230.001046
ORF1ab/nsp15A1-B66V66LGtaTta1515AY.620.006536
ORF1ab/nsp15A1-B66V66LGtaTta1515B.1.1.5161
ORF1ab/nsp15A1-B66V66LGtaTta1414AY.290.000221
ORF1ab/nsp15A1-B66V66LGtaTta1414AY.520.011401
ORF1ab/nsp15A1-B66V66LGtaTta1414AY.90.000946
ORF1ab/nsp15A1-B66V66LGtaTta1414AY.920.004022
ORF1ab/nsp15A1-B66V66LGtaTta1314B.1.2210.000923
ORF1ab/nsp15A1-B66V66LGtaCta114B.1.2210.000071
ORF1ab/nsp15A1-B66V66LGtaTta1313AY.9.20.000477
ORF1ab/nsp15A1-B66V66LGtaTta1313B.1.36.290.006725
ORF1ab/nsp15A1-B66V66LGtaTta1212AY.1180.000752
ORF1ab/nsp15A1-B66V66LGtaTta712AY.610.000733
ORF1ab/nsp15A1-B66V66LGtaCta512AY.610.000524
ORF1ab/nsp15A1-B66V66LGtaTta1212AY.660.012834
ORF1ab/nsp15A1-B66V66LGtaTta1212B.1.1.1760.005272
ORF1ab/nsp15A1-B66V66LGtaTta1111B.1.1.10.003594
ORF1ab/nsp15A1-B66V66LGtaTta1111B.1.177.870.008006
ORF1ab/nsp15A1-B66V66LGtaTta1111P.20.002053
ORF1ab/nsp15A1-B66V66LGtaTta1010AY.130.00161
ORF1ab/nsp15A1-B66V66LGtaTta1010AY.960.020747
ORF1ab/nsp15A1-B66V66AgTagCa99AY.30.00009
ORF1ab/nsp15A1-B66V66LGtaTta99AY.340.000873
ORF1ab/nsp15A1-B66V66LGtaTta99AY.4.50.000967
ORF1ab/nsp15A1-B66V66LGtaTta99AY.940.003984
ORF1ab/nsp15A1-B66V66VgtAgtG69B.10.000055
ORF1ab/nsp15A1-B66V66VgtAgtC29B.10.000018
ORF1ab/nsp15A1-B66V66VgtAgtT19B.10.000009
ORF1ab/nsp15A1-B66V66LGtaTta99B.1.1.280.002801
ORF1ab/nsp15A1-B66V66delGTA---99B.1.1.70.000008
ORF1ab/nsp15A1-B66V66IGtaAta99B.1.1600.000281
ORF1ab/nsp15A1-B66V66LGtaTta99B.1.177.520.015817
ORF1ab/nsp15A1-B66V66LGtaTta88AY.1170.000676
ORF1ab/nsp15A1-B66V66LGtaTta88AY.34.10.00408
ORF1ab/nsp15A1-B66V66LGtaTta88B.1.6370.000585
ORF1ab/nsp15A1-B66V66IGtaAta77AY.1000.000322
ORF1ab/nsp15A1-B66V66LGtaTta77AY.1080.007718
ORF1ab/nsp15A1-B66V66LGtaTta77AY.1200.00026
ORF1ab/nsp15A1-B66V66LGtaTta77AY.1210.000947
ORF1ab/nsp15A1-B66V66LGtaTta77AY.460.000729
ORF1ab/nsp15A1-B66V66LGtaTta77AY.99.20.000645
ORF1ab/nsp15A1-B66V66LGtaTta77B.1.1600.000218
ORF1ab/nsp15A1-B66V66LGtaTta66AD.20.001314
ORF1ab/nsp15A1-B66V66LGtaTta66AY.1110.001099
ORF1ab/nsp15A1-B66V66LGtaTta66AY.350.001398
ORF1ab/nsp15A1-B66V66LGtaTta66AY.540.000572
ORF1ab/nsp15A1-B66V66LGtaTta36AY.75.10.000541
ORF1ab/nsp15A1-B66V66LGtaCta36AY.75.10.000541
ORF1ab/nsp15A1-B66V66LGtaTta66AY.9.10.000502
ORF1ab/nsp15A1-B66V66LGtaTta66B.1.258.170.000624
ORF1ab/nsp15A1-B66V66LGtaTta66B.1.2980.012685
ORF1ab/nsp15A1-B66V66LGtaTta66B.1.3670.004754
ORF1ab/nsp15A1-B66V66LGtaTta66B.1.5640.002555
ORF1ab/nsp15A1-B66V66IGtaAta66B.1.617.20.000023
ORF1ab/nsp15A1-B66V66LGtaTta55A0.001935
ORF1ab/nsp15A1-B66V66IGtaAta55AY.1030.000031
ORF1ab/nsp15A1-B66V66LGtaTta55AY.300.001979
ORF1ab/nsp15A1-B66V66LGtaTta55AY.450.000608
ORF1ab/nsp15A1-B66V66LGtaTta55AY.46.60.000361
ORF1ab/nsp15A1-B66V66LGtaTta55AY.810.00996
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.1.2770.003794
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.1.3050.019305
ORF1ab/nsp15A1-B66V66IGtaAta55B.1.1.3060.002192
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.1390.003666
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.2390.006105
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.4020.04902
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.5960.000436
ORF1ab/nsp15A1-B66V66AgTagCa55B.1.617.20.000019
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.6260.028571
ORF1ab/nsp15A1-B66V66LGtaTta55B.1.930.004669
ORF1ab/nsp15A1-B66V66VgtAgtG55B.40.011038
ORF1ab/nsp15A1-B66V66VgtAgtG55P.1.40.004883
ORF1ab/nsp15A1-B66V66VgtAgtG44AY.1020.000106
ORF1ab/nsp15A1-B66V66LGtaTta44AY.3.10.000341
ORF1ab/nsp15A1-B66V66LGtaTta44AY.7.20.002237
ORF1ab/nsp15A1-B66V66LGtaTta44AY.980.000316
ORF1ab/nsp15A1-B66V66IGtaAta44B.10.000037
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.1.1890.006051
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.1.2160.003562
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.1.2840.00043
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.1.3170.001647
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.1580.095238
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.160.100.032258
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.177.560.00267
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.177.90.005326
ORF1ab/nsp15A1-B66V66AgTagCa44B.1.20.000035
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.466.20.001565
ORF1ab/nsp15A1-B66V66LGtaTta44B.1.6090.001918
ORF1ab/nsp15A1-B66V66LGtaTta44B.60.00364
ORF1ab/nsp15A1-B66V66VgtAgtG34P.10.000047
ORF1ab/nsp15A1-B66V66VgtAgtC14P.10.000016
ORF1ab/nsp15A1-B66V66LGtaTta44P.1.10.001271
ORF1ab/nsp15A1-B66V66LGtaTta33A.2.50.001497
ORF1ab/nsp15A1-B66V66IGtaAta33AY.230.000209
ORF1ab/nsp15A1-B66V66LGtaTta33AY.270.000194
ORF1ab/nsp15A1-B66V66IGtaAta33AY.390.000074
ORF1ab/nsp15A1-B66V66AgTagCa33AY.40.000005
ORF1ab/nsp15A1-B66V66LGtaTta33AY.480.001395
ORF1ab/nsp15A1-B66V66LGtaTta33AY.590.001589
ORF1ab/nsp15A1-B66V66delGTA---33B.1.10.000054
ORF1ab/nsp15A1-B66V66VgtAgtG33B.1.1.2140.000166
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.1.2730.02027
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.1.390.001529
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.1.630.001157
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.177.420.002683
ORF1ab/nsp15A1-B66V66IGtaAta33B.1.20.000026
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.2060.002447
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.36.80.003
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.4560.009804
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.4620.021739
ORF1ab/nsp15A1-B66V66LGtaTta33B.1.6120.007958
ORF1ab/nsp15A1-B66V66LGtaTta33C.370.000348
ORF1ab/nsp15A1-B66V66LGtaTta33N.50.0053
ORF1ab/nsp15A1-B66V66IGtaAta33P.10.000047
ORF1ab/nsp15A1-B66V66IGtaAta220.111111
ORF1ab/nsp15A1-B66V66delGTA---220.111111
ORF1ab/nsp15A1-B66V66LGtaTta22A.50.003846
ORF1ab/nsp15A1-B66V66EgTagAa22All0
ORF1ab/nsp15A1-B66V66del1gtAgt-12All0
ORF1ab/nsp15A1-B66V66del1Gta-ta12All0
ORF1ab/nsp15A1-B66V66VgtAgtG22AY.1000.000092
ORF1ab/nsp15A1-B66V66LGtaTta22AY.1130.000285
ORF1ab/nsp15A1-B66V66LGtaTta22AY.116.10.000623
ORF1ab/nsp15A1-B66V66LGtaTta22AY.16.10.00094
ORF1ab/nsp15A1-B66V66VgtAgtG22AY.250.000012
ORF1ab/nsp15A1-B66V66VgtAgtG22AY.290.000032
ORF1ab/nsp15A1-B66V66LGtaTta22AY.360.000296
ORF1ab/nsp15A1-B66V66VgtAgtT22AY.4.20.000043
ORF1ab/nsp15A1-B66V66LGtaTta22AY.4.40.000818
ORF1ab/nsp15A1-B66V66AgTagCa22AY.430.000009
ORF1ab/nsp15A1-B66V66delGTA---22AY.440.000012
ORF1ab/nsp15A1-B66V66AgTagCa22AY.440.000012
ORF1ab/nsp15A1-B66V66IGtaAta22AY.440.000012
ORF1ab/nsp15A1-B66V66LGtaTta22AY.46.20.001271
ORF1ab/nsp15A1-B66V66LGtaTta22AY.46.40.000329
ORF1ab/nsp15A1-B66V66VgtAgtG22AY.50.000041
ORF1ab/nsp15A1-B66V66LGtaTta22AY.550.001835
ORF1ab/nsp15A1-B66V66LGtaTta22AY.580.001815
ORF1ab/nsp15A1-B66V66LGtaTta22AY.700.000417
ORF1ab/nsp15A1-B66V66LGtaTta22AY.740.000231
ORF1ab/nsp15A1-B66V66VgtAgtG22AY.750.000112
ORF1ab/nsp15A1-B66V66LGtaTta22AY.770.002255
ORF1ab/nsp15A1-B66V66LGtaTta22AY.880.001768
ORF1ab/nsp15A1-B66V66IGtaAta22AZ.20.001642
ORF1ab/nsp15A1-B66V66LGtaTta22B0.000256
ORF1ab/nsp15A1-B66V66delGTA---22B.10.000018
ORF1ab/nsp15A1-B66V66VgtAgtT12B.1.1.10.000327
ORF1ab/nsp15A1-B66V66VgtAgtG12B.1.1.10.000327
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1.2690.002706
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1.3020.004149
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1.330.000842
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1.3480.001592
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1.4090.005666
ORF1ab/nsp15A1-B66V66AgTagCa22B.1.1.70.000002
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.110.30.001437
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1460.008475
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.160.160.001859
ORF1ab/nsp15A1-B66V66IGtaAta22B.1.1770.000026
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.177.210.000153
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.177.330.003289
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.177.350.001382
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.177.70.00033
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.1790.007519
ORF1ab/nsp15A1-B66V66delGTA---22B.1.20.000018
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.2580.000133
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.2740.02381
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.351.20.000605
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.351.50.001199
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.36.390.004435
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.3660.009756
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.3690.00057
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.4040.002604
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.5090.001732
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.5430.02
ORF1ab/nsp15A1-B66V66LGtaTta22B.1.5750.000607
ORF1ab/nsp15A1-B66V66LGtaTta22B.400.000729
ORF1ab/nsp15A1-B66V66LGtaTta22C.350.001548
ORF1ab/nsp15A1-B66V66LGtaTta22Q.80.00033
ORF1ab/nsp15A1-B66V66LGtaTta11A.23.10.000704
ORF1ab/nsp15A1-B66V66DgTAgAC11All0
ORF1ab/nsp15A1-B66V66CGTATGC11All0
ORF1ab/nsp15A1-B66V66LGtaTta11AY.1010.00049
ORF1ab/nsp15A1-B66V66LGtaTta11AY.1050.000643
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.1060.000335
ORF1ab/nsp15A1-B66V66LGtaTta11AY.1070.000466
ORF1ab/nsp15A1-B66V66IGtaAta11AY.116.10.000311
ORF1ab/nsp15A1-B66V66IGtaAta11AY.1170.000085
ORF1ab/nsp15A1-B66V66delGTA---11AY.1180.000063
ORF1ab/nsp15A1-B66V66LGtaTta11AY.120.000316
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.140.000088
ORF1ab/nsp15A1-B66V66LGtaTta11AY.140.000088
ORF1ab/nsp15A1-B66V66AgTagCa11AY.200.000039
ORF1ab/nsp15A1-B66V66LGtaTta11AY.210.001898
ORF1ab/nsp15A1-B66V66VgtAgtT11AY.23.10.000417
ORF1ab/nsp15A1-B66V66LGtaTta11AY.240.000431
ORF1ab/nsp15A1-B66V66IGtaAta11AY.250.000006
ORF1ab/nsp15A1-B66V66IGtaAta11AY.290.000016
ORF1ab/nsp15A1-B66V66LGtaTta11AY.320.000532
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.320.000532
ORF1ab/nsp15A1-B66V66AgTagCa11AY.34.10.00051
ORF1ab/nsp15A1-B66V66LGtaTta11AY.380.000499
ORF1ab/nsp15A1-B66V66LGtaTta11AY.39.10.00004
ORF1ab/nsp15A1-B66V66IGtaAta11AY.4.30.000842
ORF1ab/nsp15A1-B66V66delGTA---11AY.430.000004
ORF1ab/nsp15A1-B66V66IGtaAta11AY.430.000004
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.430.000004
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.440.000006
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.460.000104
ORF1ab/nsp15A1-B66V66LGtaTta11AY.46.50.000198
ORF1ab/nsp15A1-B66V66IGtaAta11AY.470.000031
ORF1ab/nsp15A1-B66V66IGtaAta11AY.50.000021
ORF1ab/nsp15A1-B66V66delGTA---11AY.5.30.000337
ORF1ab/nsp15A1-B66V66LGtaTta11AY.5.30.000337
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.530.000288
ORF1ab/nsp15A1-B66V66IGtaAta11AY.540.000095
ORF1ab/nsp15A1-B66V66delGTA---11AY.620.000436
ORF1ab/nsp15A1-B66V66LGtaTta11AY.670.000464
ORF1ab/nsp15A1-B66V66EgTagAa11AY.690.000187
ORF1ab/nsp15A1-B66V66LGtaTta11AY.690.000187
ORF1ab/nsp15A1-B66V66LGtaTta11AY.70.000196
ORF1ab/nsp15A1-B66V66IGtaAta11AY.700.000209
ORF1ab/nsp15A1-B66V66LGtaTta11AY.730.000665
ORF1ab/nsp15A1-B66V66VgtAgtG11AY.75.10.00018
ORF1ab/nsp15A1-B66V66IGtaAta11AY.820.001357
ORF1ab/nsp15A1-B66V66IGtaAta11AY.9.20.000037
ORF1ab/nsp15A1-B66V66LGtaTta11AY.910.00073
ORF1ab/nsp15A1-B66V66LGtaTta11AY.91.10.004065
ORF1ab/nsp15A1-B66V66LGtaTta11AY.950.000761
ORF1ab/nsp15A1-B66V66IGtaAta11AY.980.000079
ORF1ab/nsp15A1-B66V66LGtaTta11AY.990.001049
ORF1ab/nsp15A1-B66V66AgTagCa11AY.99.20.000092
ORF1ab/nsp15A1-B66V66AgTagCa11B.10.000009
ORF1ab/nsp15A1-B66V66EgTagAa11B.10.000009
ORF1ab/nsp15A1-B66V66del1Gta-ta11B.10.000009
ORF1ab/nsp15A1-B66V66VgtAgtC11B.1.10.000018
ORF1ab/nsp15A1-B66V66AgTagCa11B.1.10.000018
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.1210.002427
ORF1ab/nsp15A1-B66V66VgtAgtC11B.1.1.1340.011364
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.1360.021277
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.1530.001095
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.2050.003717
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.1.2100.005714
ORF1ab/nsp15A1-B66V66VgtAgtC11B.1.1.2290.005747
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.2310.003096
ORF1ab/nsp15A1-B66V66AgTagCa11B.1.1.2630.001558
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.2790.001121
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.1.2940.001266
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.2980.000862
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.3060.000438
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.3120.001912
ORF1ab/nsp15A1-B66V66delGTA---11B.1.1.3150.008475
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.3220.008772
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.3260.001761
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.3540.004386
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.370.000193
ORF1ab/nsp15A1-B66V66VgtAgtT11B.1.1.4200.001006
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.4490.022727
ORF1ab/nsp15A1-B66V66LGtaCta11B.1.1.5070.008696
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.5230.001563
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.610.008772
ORF1ab/nsp15A1-B66V66delGTA---11B.1.1.700.000341
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.700.000341
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1.890.006061
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1170.0125
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1470.000756
ORF1ab/nsp15A1-B66V66delGTA---11B.1.1600.000031
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.160.260.002421
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.177.140.006098
ORF1ab/nsp15A1-B66V66VgtAgtG11B.1.177.210.000076
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.177.440.000519
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.177.500.004695
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.177.570.000281
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.177.570.000281
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.177.580.001332
ORF1ab/nsp15A1-B66V66delGTA---11B.1.177.730.000566
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.177.80.000752
ORF1ab/nsp15A1-B66V66delGTA---11B.1.177.830.001481
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.1820.007246
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.1990.004132
ORF1ab/nsp15A1-B66V66VgtAgtG11B.1.20.000009
ORF1ab/nsp15A1-B66V66DgTAgAC11B.1.20.000009
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.221.10.002907
ORF1ab/nsp15A1-B66V66delGTA---11B.1.2580.000067
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.258.110.000396
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.3110.000275
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.3490.000715
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.360.000146
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.36.180.00042
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.36.20.010753
ORF1ab/nsp15A1-B66V66AgTagCa11B.1.36.270.000763
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.3620.001541
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.3780.006849
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.4080.00369
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.4090.000781
ORF1ab/nsp15A1-B66V66VgtAgtG11B.1.4290.000024
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.4330.003195
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.4380.006536
ORF1ab/nsp15A1-B66V66VgtAgtC11B.1.440.008333
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.4590.004082
ORF1ab/nsp15A1-B66V66LGtaCta11B.1.4700.001404
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.4850.014925
ORF1ab/nsp15A1-B66V66VgtAgtG11B.1.4970.000315
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5170.000427
ORF1ab/nsp15A1-B66V66IGtaAta11B.1.5260.000024
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5300.007143
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5380.008065
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5600.00463
ORF1ab/nsp15A1-B66V66delGTA---11B.1.5610.000397
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5670.003333
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5680.001111
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5800.004065
ORF1ab/nsp15A1-B66V66delGTA---11B.1.5820.000491
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5950.000261
ORF1ab/nsp15A1-B66V66VgtAgtG11B.1.5960.000087
ORF1ab/nsp15A1-B66V66AgTagCa11B.1.5960.000087
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.5970.00463
ORF1ab/nsp15A1-B66V66LGtaTta11B.1.6000.005848
ORF1ab/nsp15A1-B66V66delGTA---11B.1.617.20.000004
ORF1ab/nsp15A1-B66V66del1gtAgt-11B.1.617.20.000004
ORF1ab/nsp15A1-B66V66delGTA---11B.1.6300.005236
ORF1ab/nsp15A1-B66V66AgTagCa11B.460.020833
ORF1ab/nsp15A1-B66V66VgtAgtC11B.6.60.000889
ORF1ab/nsp15A1-B66V66AgTagCa11C.370.000116
ORF1ab/nsp15A1-B66V66VgtAgtC11D.20.000075
ORF1ab/nsp15A1-B66V66IGtaAta11D.20.000075
ORF1ab/nsp15A1-B66V66delGTA---11P.10.000016
ORF1ab/nsp15A1-B66V66CGTATGC11P.10.000016
ORF1ab/nsp15A1-B66V66LGtaTta11P.1.140.000048
ORF1ab/nsp15A1-B66V66delGTA---11P.1.150.000232
ORF1ab/nsp15A1-B66V66VgtAgtG11P.1.170.000162
ORF1ab/nsp15A1-B66V66LGtaTta11Q.10.000126
ORF1ab/nsp15A1-B66V66LGtaTta11Q.70.001111
ORF1ab/nsp15A1-B66V66delGTA---11Q.80.000165
ORF1ab/nsp15A1-B66V66LGtaTta11W.10.008696