CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 65 | P65S | P6517S | nonsyn | Cca | Tca | 6121 | 6120 | 0.999837 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65S | P6517S | nonsyn | CcA | TcT | 6121 | 1 | 0.000163372 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65P | P6517P | syn | ccA | ccT | 1570 | 1320 | 0.840764 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65P | P6517P | syn | ccA | ccG | 1570 | 149 | 0.0949045 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65P | P6517P | syn | ccA | ccC | 1570 | 101 | 0.0643312 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65L | P6517L | nonsyn | cCa | cTa | 273 | 273 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65T | P6517T | nonsyn | Cca | Aca | 43 | 43 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65del | P6517del | del | CCA | --- | 36 | 36 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65Q | P6517Q | nonsyn | cCa | cAa | 18 | 17 | 0.944444 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65Q | P6517Q | nonsyn | cCA | cAG | 18 | 1 | 0.0555556 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65del1 | P6517del1 | del | Cca | -ca | 2 | 2 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65R | P6517R | nonsyn | cCa | cGa | 1 | 1 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65del2 | P6517del2 | del | cCA | c-- | 1 | 1 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65C | P6517C | nonsyn | CCA | TGT | 1 | 1 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65K | P6517K | nonsyn | CCa | AAa | 1 | 1 | 1 | 19813-19815 |
ORF1ab/nsp15A1-B | 65 | P65A | P6517A | nonsyn | Cca | Gca | 1 | 1 | 1 | 19813-19815 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 6120 | 6121 | All | 0.001171 |
ORF1ab/nsp15A1-B | 65 | P65S | CcA | TcT | 1 | 6121 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1320 | 1570 | All | 0.000252 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 149 | 1570 | All | 0.000028 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 101 | 1570 | All | 0.000019 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1127 | 1127 | B.1.1.7 | 0.001009 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1114 | 1114 | AY.20 | 0.043296 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1007 | 1007 | B.1.617.1 | 0.129868 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 901 | 901 | AY.87 | 0.750208 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 875 | 875 | AY.4 | 0.001362 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 273 | 273 | All | 0.000052 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 233 | 233 | B.1.617.2 | 0.000877 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 205 | 205 | AY.29 | 0.003234 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 139 | 139 | AY.5 | 0.00287 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 125 | 125 | B.1.480 | 0.310945 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 104 | 104 | AY.44 | 0.000633 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 72 | 93 | AY.4 | 0.000112 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 18 | 93 | AY.4 | 0.000028 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 3 | 93 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 85 | 85 | AY.42 | 0.00342 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 73 | 73 | B.1.1.519 | 0.002899 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 72 | 72 | B.1.2 | 0.000634 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 61 | 70 | B.1.617.2 | 0.00023 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 9 | 70 | B.1.617.2 | 0.000034 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 68 | 68 | AY.25 | 0.000409 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 67 | 67 | AY.4 | 0.000104 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 65 | 65 | AY.3 | 0.000647 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 63 | 63 | B.1 | 0.000577 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 57 | 57 | B.1.1 | 0.001034 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 47 | 47 | AY.103 | 0.000292 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 43 | 44 | AY.103 | 0.000267 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 44 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 43 | 43 | All | 0.000008 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 42 | 42 | AY.43 | 0.000186 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 22 | 42 | B.1.1.7 | 0.00002 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 16 | 42 | B.1.1.7 | 0.000014 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 4 | 42 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 41 | 41 | AY.120 | 0.001524 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 36 | 36 | All | 0.000007 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 36 | 36 | B.1.241 | 0.029221 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 31 | 31 | B.1.177 | 0.000408 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 17 | 28 | AY.44 | 0.000103 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 11 | 28 | AY.44 | 0.000067 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 26 | 26 | B.1.258.17 | 0.002703 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 24 | 24 | AY.39 | 0.000593 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 22 | 22 | AY.121 | 0.002977 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 21 | 21 | AY.46.4 | 0.003455 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 19 | 19 | AY.36 | 0.002816 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 19 | 19 | B | 0.002428 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 17 | 18 | All | 0.000003 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCA | cAG | 1 | 18 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 12 | 17 | AY.43 | 0.000053 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 5 | 17 | AY.43 | 0.000022 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 17 | 17 | AY.5 | 0.000351 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 17 | 17 | B.1.177.55 | 0.039627 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 17 | 17 | B.1.311 | 0.004668 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 14 | 15 | B.1.2 | 0.000123 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 15 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 11 | 11 | C.36.3 | 0.006239 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 11 | 11 | Q.2 | 0.006748 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 10 | 10 | B.1.177.75 | 0.010406 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 9 | 9 | B.1.471 | 0.02459 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 5 | 8 | AY.3 | 0.00005 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 8 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 1 | 8 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 7 | 8 | B.1 | 0.000064 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCA | cAG | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 8 | 8 | B.1.1.416 | 0.00724 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 3 | 7 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 4 | 6 | AY.39 | 0.000099 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 6 | AY.39 | 0.000049 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 6 | 6 | B.1.1.368 | 0.018519 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 5 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | AY.64 | 0.002381 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | B.1.1.128 | 0.028369 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 3 | B.1.234 | 0.000264 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 3 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp15A1-B | 65 | P65del1 | Cca | -ca | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 2 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 2 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 65 | P65S | CcA | TcT | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 2 | 2 | B.61 | 0.011494 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | C.38 | 0.016129 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 65 | P65C | CCA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65R | cCa | cGa | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65K | CCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65del2 | cCA | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65A | Cca | Gca | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 65 | P65K | CCa | AAa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 65 | P65del1 | Cca | -ca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp15A1-B | 65 | P65R | cCa | cGa | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp15A1-B | 65 | P65A | Cca | Gca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 65 | P65del2 | cCA | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp15A1-B | 65 | P65del1 | Cca | -ca | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp15A1-B | 65 | P65T | Cca | Aca | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp15A1-B | 65 | P65Q | cCa | cAa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccC | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 65 | P65L | cCa | cTa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 65 | P65C | CCA | TGT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 65 | P65del | CCA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 65 | P65P | ccA | ccG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 65 | P65S | Cca | Tca | 1 | 1 | S.1 | 0.00495 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|