CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 38

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B38V38FV6490FnonsynGttTtt17541754119732-19734
ORF1ab/nsp15A1-B38V38VV6490VsyngtTgtA173770.44508719732-19734
ORF1ab/nsp15A1-B38V38VV6490VsyngtTgtC173650.37572319732-19734
ORF1ab/nsp15A1-B38V38VV6490VsyngtTgtG173310.17919119732-19734
ORF1ab/nsp15A1-B38V38IV6490InonsynGttAtt1681670.99404819732-19734
ORF1ab/nsp15A1-B38V38IV6490InonsynGtTAtA16810.0059523819732-19734
ORF1ab/nsp15A1-B38V38AV6490AnonsyngTtgCt131131119732-19734
ORF1ab/nsp15A1-B38V38delV6490deldelGTT---3636119732-19734
ORF1ab/nsp15A1-B38V38GV6490GnonsyngTtgGt12110.91666719732-19734
ORF1ab/nsp15A1-B38V38GV6490GnonsyngTTgGC1210.083333319732-19734
ORF1ab/nsp15A1-B38V38DV6490DnonsyngTtgAt44119732-19734
ORF1ab/nsp15A1-B38V38SV6490SnonsynGTtAGt11119732-19734
ORF1ab/nsp15A1-B38V38LV6490LnonsynGttCtt11119732-19734
ORF1ab/nsp15A1-B38V38del1V6490del1delGtt-tt11119732-19734
ORF1ab/nsp15A1-B38V38CV6490CnonsynGTtTGt11119732-19734

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B38V38FGttTtt17541754All0.000335
ORF1ab/nsp15A1-B38V38FGttTtt12561256C.350.972136
ORF1ab/nsp15A1-B38V38FGttTtt214214B.1.20.001884
ORF1ab/nsp15A1-B38V38VgtTgtA77173All0.000015
ORF1ab/nsp15A1-B38V38VgtTgtC65173All0.000012
ORF1ab/nsp15A1-B38V38VgtTgtG31173All0.000006
ORF1ab/nsp15A1-B38V38IGttAtt167168All0.000032
ORF1ab/nsp15A1-B38V38IGtTAtA1168All0
ORF1ab/nsp15A1-B38V38AgTtgCt131131All0.000025
ORF1ab/nsp15A1-B38V38FGttTtt7373AY.290.001151
ORF1ab/nsp15A1-B38V38VgtTgtG2248B.1.1.70.00002
ORF1ab/nsp15A1-B38V38VgtTgtC1848B.1.1.70.000016
ORF1ab/nsp15A1-B38V38VgtTgtA848B.1.1.70.000007
ORF1ab/nsp15A1-B38V38AgTtgCt4848B.1.177.70.007913
ORF1ab/nsp15A1-B38V38FGttTtt4747B.1.1.70.000042
ORF1ab/nsp15A1-B38V38VgtTgtA3940P.10.000614
ORF1ab/nsp15A1-B38V38VgtTgtC140P.10.000016
ORF1ab/nsp15A1-B38V38FGttTtt3939AY.750.002185
ORF1ab/nsp15A1-B38V38delGTT---3636All0.000007
ORF1ab/nsp15A1-B38V38IGttAtt2727B.1.1.70.000024
ORF1ab/nsp15A1-B38V38FGttTtt2525B.10.000229
ORF1ab/nsp15A1-B38V38IGttAtt2222B.1.617.20.000083
ORF1ab/nsp15A1-B38V38IGttAtt2121AY.1030.00013
ORF1ab/nsp15A1-B38V38AgTtgCt1919B.1.617.20.000072
ORF1ab/nsp15A1-B38V38AgTtgCt1818B.1.1.70.000016
ORF1ab/nsp15A1-B38V38VgtTgtC1616AY.1210.002165
ORF1ab/nsp15A1-B38V38GgTtgGt1112All0.000002
ORF1ab/nsp15A1-B38V38GgTTgGC112All0
ORF1ab/nsp15A1-B38V38FGttTtt1212AY.40.000019
ORF1ab/nsp15A1-B38V38IGttAtt1111AY.40.000017
ORF1ab/nsp15A1-B38V38AgTtgCt1010AY.430.000044
ORF1ab/nsp15A1-B38V38FGttTtt99AY.430.00004
ORF1ab/nsp15A1-B38V38IGttAtt88AY.1020.000212
ORF1ab/nsp15A1-B38V38FGttTtt88B.1.1.3720.00551
ORF1ab/nsp15A1-B38V38delGTT---88B.1.1.70.000007
ORF1ab/nsp15A1-B38V38VgtTgtC68B.1.3510.000178
ORF1ab/nsp15A1-B38V38VgtTgtA28B.1.3510.000059
ORF1ab/nsp15A1-B38V38VgtTgtC37AY.40.000005
ORF1ab/nsp15A1-B38V38VgtTgtA37AY.40.000005
ORF1ab/nsp15A1-B38V38VgtTgtG17AY.40.000002
ORF1ab/nsp15A1-B38V38VgtTgtA77AY.9.20.000257
ORF1ab/nsp15A1-B38V38VgtTgtG66AY.1130.000854
ORF1ab/nsp15A1-B38V38IGttAtt66AY.30.00006
ORF1ab/nsp15A1-B38V38GgTtgGt66P.1.70.001916
ORF1ab/nsp15A1-B38V38IGttAtt55AY.1170.000423
ORF1ab/nsp15A1-B38V38VgtTgtA35AY.250.000018
ORF1ab/nsp15A1-B38V38VgtTgtG25AY.250.000012
ORF1ab/nsp15A1-B38V38IGttAtt55AY.430.000022
ORF1ab/nsp15A1-B38V38IGttAtt55B.1.177.810.000947
ORF1ab/nsp15A1-B38V38IGttAtt55P.10.000079
ORF1ab/nsp15A1-B38V38DgTtgAt44All0.000001
ORF1ab/nsp15A1-B38V38FGttTtt44AY.250.000024
ORF1ab/nsp15A1-B38V38FGttTtt44AY.440.000024
ORF1ab/nsp15A1-B38V38IGttAtt44B.10.000037
ORF1ab/nsp15A1-B38V38FGttTtt44B.1.1.10.001307
ORF1ab/nsp15A1-B38V38IGttAtt44B.1.1.5190.000159
ORF1ab/nsp15A1-B38V38FGttTtt44B.1.1600.000125
ORF1ab/nsp15A1-B38V38IGttAtt44B.1.1770.000053
ORF1ab/nsp15A1-B38V38FGttTtt44B.1.1770.000053
ORF1ab/nsp15A1-B38V38FGttTtt44B.1.617.20.000015
ORF1ab/nsp15A1-B38V38AgTtgCt44P.1.140.000191
ORF1ab/nsp15A1-B38V38AgTtgCt33AY.1030.000019
ORF1ab/nsp15A1-B38V38IGttAtt33AY.1180.000188
ORF1ab/nsp15A1-B38V38IGttAtt33AY.250.000018
ORF1ab/nsp15A1-B38V38IGttAtt33AY.570.001969
ORF1ab/nsp15A1-B38V38VgtTgtA33AY.710.001425
ORF1ab/nsp15A1-B38V38IGttAtt33AY.99.10.004658
ORF1ab/nsp15A1-B38V38delGTT---33B.1.10.000054
ORF1ab/nsp15A1-B38V38AgTtgCt33B.1.2210.000213
ORF1ab/nsp15A1-B38V38IGttAtt33B.1.5900.013636
ORF1ab/nsp15A1-B38V38VgtTgtC23B.1.617.20.000008
ORF1ab/nsp15A1-B38V38VgtTgtA13B.1.617.20.000004
ORF1ab/nsp15A1-B38V38delGTT---220.111111
ORF1ab/nsp15A1-B38V38VgtTgtC22AY.1020.000053
ORF1ab/nsp15A1-B38V38VgtTgtA22AY.1070.000932
ORF1ab/nsp15A1-B38V38IGttAtt22AY.1200.000074
ORF1ab/nsp15A1-B38V38VgtTgtA22AY.200.000078
ORF1ab/nsp15A1-B38V38VgtTgtC22AY.440.000012
ORF1ab/nsp15A1-B38V38IGttAtt22AY.440.000012
ORF1ab/nsp15A1-B38V38VgtTgtA22AY.450.000243
ORF1ab/nsp15A1-B38V38IGttAtt22AY.460.000208
ORF1ab/nsp15A1-B38V38AgTtgCt22AY.50.000041
ORF1ab/nsp15A1-B38V38FGttTtt22AY.50.000041
ORF1ab/nsp15A1-B38V38FGttTtt22AY.99.20.000184
ORF1ab/nsp15A1-B38V38delGTT---22B.10.000018
ORF1ab/nsp15A1-B38V38FGttTtt22B.1.10.000036
ORF1ab/nsp15A1-B38V38IGttAtt22B.1.10.000036
ORF1ab/nsp15A1-B38V38delGTT---22B.1.1.3150.016949
ORF1ab/nsp15A1-B38V38FGttTtt22B.1.1.700.000682
ORF1ab/nsp15A1-B38V38AgTtgCt22B.1.1770.000026
ORF1ab/nsp15A1-B38V38VgtTgtC12B.1.1770.000013
ORF1ab/nsp15A1-B38V38VgtTgtA12B.1.1770.000013
ORF1ab/nsp15A1-B38V38AgTtgCt22B.1.177.870.001456
ORF1ab/nsp15A1-B38V38delGTT---22B.1.20.000018
ORF1ab/nsp15A1-B38V38IGtTAtA12B.1.20.000009
ORF1ab/nsp15A1-B38V38IGttAtt12B.1.20.000009
ORF1ab/nsp15A1-B38V38VgtTgtC22B.1.2410.001623
ORF1ab/nsp15A1-B38V38FGttTtt22B.1.3110.000549
ORF1ab/nsp15A1-B38V38FGttTtt22B.1.4270.000101
ORF1ab/nsp15A1-B38V38AgTtgCt22B.1.466.20.000782
ORF1ab/nsp15A1-B38V38FGttTtt22C.370.000232
ORF1ab/nsp15A1-B38V38FGttTtt22P.10.000032
ORF1ab/nsp15A1-B38V38delGTT---22P.1.150.000465
ORF1ab/nsp15A1-B38V38IGttAtt22R.10.00018
ORF1ab/nsp15A1-B38V38VgtTgtC22R.10.00018
ORF1ab/nsp15A1-B38V38FGttTtt110.055556
ORF1ab/nsp15A1-B38V38IGttAtt110.055556
ORF1ab/nsp15A1-B38V38GgTtgGt110.055556
ORF1ab/nsp15A1-B38V38CGTtTGt110.055556
ORF1ab/nsp15A1-B38V38SGTtAGt110.055556
ORF1ab/nsp15A1-B38V38delGTT---11A0.000387
ORF1ab/nsp15A1-B38V38LGttCtt11All0
ORF1ab/nsp15A1-B38V38del1Gtt-tt11All0
ORF1ab/nsp15A1-B38V38SGTtAGt11All0
ORF1ab/nsp15A1-B38V38CGTtTGt11All0
ORF1ab/nsp15A1-B38V38FGttTtt11AY.1000.000046
ORF1ab/nsp15A1-B38V38FGttTtt11AY.1020.000027
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.1030.000006
ORF1ab/nsp15A1-B38V38FGttTtt11AY.1070.000466
ORF1ab/nsp15A1-B38V38IGttAtt11AY.1090.00074
ORF1ab/nsp15A1-B38V38GgTTgGC11AY.1160.000287
ORF1ab/nsp15A1-B38V38delGTT---11AY.1180.000063
ORF1ab/nsp15A1-B38V38AgTtgCt11AY.1190.000035
ORF1ab/nsp15A1-B38V38delGTT---11AY.1200.000037
ORF1ab/nsp15A1-B38V38IGttAtt11AY.120.10.000321
ORF1ab/nsp15A1-B38V38VgtTgtA11AY.230.00007
ORF1ab/nsp15A1-B38V38FGttTtt11AY.240.000431
ORF1ab/nsp15A1-B38V38AgTtgCt11AY.250.000006
ORF1ab/nsp15A1-B38V38IGttAtt11AY.260.000028
ORF1ab/nsp15A1-B38V38FGttTtt11AY.30.00001
ORF1ab/nsp15A1-B38V38AgTtgCt11AY.330.000067
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.340.000097
ORF1ab/nsp15A1-B38V38IGttAtt11AY.340.000097
ORF1ab/nsp15A1-B38V38VgtTgtA11AY.370.000316
ORF1ab/nsp15A1-B38V38AgTtgCt11AY.390.000025
ORF1ab/nsp15A1-B38V38IGttAtt11AY.390.000025
ORF1ab/nsp15A1-B38V38delGTT---11AY.4.50.000107
ORF1ab/nsp15A1-B38V38FGttTtt11AY.4.50.000107
ORF1ab/nsp15A1-B38V38FGttTtt11AY.420.00004
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.430.000004
ORF1ab/nsp15A1-B38V38delGTT---11AY.430.000004
ORF1ab/nsp15A1-B38V38AgTtgCt11AY.440.000006
ORF1ab/nsp15A1-B38V38delGTT---11AY.440.000006
ORF1ab/nsp15A1-B38V38AgTtgCt11AY.450.000122
ORF1ab/nsp15A1-B38V38delGTT---11AY.46.10.001027
ORF1ab/nsp15A1-B38V38FGttTtt11AY.470.000031
ORF1ab/nsp15A1-B38V38IGttAtt11AY.470.000031
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.5.40.000277
ORF1ab/nsp15A1-B38V38IGttAtt11AY.5.40.000277
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.570.000656
ORF1ab/nsp15A1-B38V38FGttTtt11AY.610.000105
ORF1ab/nsp15A1-B38V38delGTT---11AY.620.000436
ORF1ab/nsp15A1-B38V38FGttTtt11AY.7.10.000113
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.90.000068
ORF1ab/nsp15A1-B38V38VgtTgtC11AY.980.000079
ORF1ab/nsp15A1-B38V38AgTtgCt11B.10.000009
ORF1ab/nsp15A1-B38V38VgtTgtC11B.10.000009
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.10.000018
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.1.2570.009709
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1.2770.000759
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1.280.000311
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.1.2890.002083
ORF1ab/nsp15A1-B38V38delGTT---11B.1.1.3010.001179
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1.3020.002075
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1.4090.002833
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1.4280.009434
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.1.4480.002033
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.1.530.013699
ORF1ab/nsp15A1-B38V38delGTT---11B.1.1.700.000341
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1590.012195
ORF1ab/nsp15A1-B38V38delGTT---11B.1.1600.000031
ORF1ab/nsp15A1-B38V38IGttAtt11B.1.160.150.00495
ORF1ab/nsp15A1-B38V38LGttCtt11B.1.1770.000013
ORF1ab/nsp15A1-B38V38DgTtgAt11B.1.1770.000013
ORF1ab/nsp15A1-B38V38delGTT---11B.1.177.730.000566
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.177.810.000189
ORF1ab/nsp15A1-B38V38delGTT---11B.1.177.830.001481
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.177.860.000183
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.1790.003759
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.20.000009
ORF1ab/nsp15A1-B38V38GgTtgGt11B.1.20.000009
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.2340.000132
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.2580.000067
ORF1ab/nsp15A1-B38V38delGTT---11B.1.2580.000067
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.258.170.000104
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.2980.002114
ORF1ab/nsp15A1-B38V38GgTtgGt11B.1.3110.000275
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.3240.001605
ORF1ab/nsp15A1-B38V38AgTtgCt11B.1.3510.00003
ORF1ab/nsp15A1-B38V38VgtTgtC11B.1.36.290.000517
ORF1ab/nsp15A1-B38V38DgTtgAt11B.1.4000.000429
ORF1ab/nsp15A1-B38V38VgtTgtC11B.1.4270.00005
ORF1ab/nsp15A1-B38V38VgtTgtA11B.1.4290.000024
ORF1ab/nsp15A1-B38V38DgTtgAt11B.1.4670.04
ORF1ab/nsp15A1-B38V38IGttAtt11B.1.5260.000024
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.5400.009709
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.5650.00081
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.5820.000491
ORF1ab/nsp15A1-B38V38del1Gtt-tt11B.1.5950.000261
ORF1ab/nsp15A1-B38V38FGttTtt11B.1.5960.000087
ORF1ab/nsp15A1-B38V38IGttAtt11B.1.5960.000087
ORF1ab/nsp15A1-B38V38DgTtgAt11B.1.617.20.000004
ORF1ab/nsp15A1-B38V38GgTtgGt11B.1.617.20.000004
ORF1ab/nsp15A1-B38V38FGttTtt11B.40.002208
ORF1ab/nsp15A1-B38V38FGttTtt11B.400.000364
ORF1ab/nsp15A1-B38V38IGttAtt11B.6.60.000889
ORF1ab/nsp15A1-B38V38AgTtgCt11C.20.016129
ORF1ab/nsp15A1-B38V38FGttTtt11C.340.037037
ORF1ab/nsp15A1-B38V38IGttAtt11C.370.000116
ORF1ab/nsp15A1-B38V38VgtTgtA11C.370.000116
ORF1ab/nsp15A1-B38V38GgTtgGt11P.10.000016
ORF1ab/nsp15A1-B38V38delGTT---11P.10.000016
ORF1ab/nsp15A1-B38V38AgTtgCt11P.10.000016
ORF1ab/nsp15A1-B38V38IGttAtt11P.1.20.001156
ORF1ab/nsp15A1-B38V38FGttTtt11R.10.00009