CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 38

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	38	V38F	V6490F	nonsyn	Gtt	Ttt	1754	1754	1	19732-19734
ORF1ab/nsp15A1-B	38	V38V	V6490V	syn	gtT	gtA	173	77	0.445087	19732-19734
ORF1ab/nsp15A1-B	38	V38V	V6490V	syn	gtT	gtC	173	65	0.375723	19732-19734
ORF1ab/nsp15A1-B	38	V38V	V6490V	syn	gtT	gtG	173	31	0.179191	19732-19734
ORF1ab/nsp15A1-B	38	V38I	V6490I	nonsyn	Gtt	Att	168	167	0.994048	19732-19734
ORF1ab/nsp15A1-B	38	V38I	V6490I	nonsyn	GtT	AtA	168	1	0.00595238	19732-19734
ORF1ab/nsp15A1-B	38	V38A	V6490A	nonsyn	gTt	gCt	131	131	1	19732-19734
ORF1ab/nsp15A1-B	38	V38del	V6490del	del	GTT	---	36	36	1	19732-19734
ORF1ab/nsp15A1-B	38	V38G	V6490G	nonsyn	gTt	gGt	12	11	0.916667	19732-19734
ORF1ab/nsp15A1-B	38	V38G	V6490G	nonsyn	gTT	gGC	12	1	0.0833333	19732-19734
ORF1ab/nsp15A1-B	38	V38D	V6490D	nonsyn	gTt	gAt	4	4	1	19732-19734
ORF1ab/nsp15A1-B	38	V38S	V6490S	nonsyn	GTt	AGt	1	1	1	19732-19734
ORF1ab/nsp15A1-B	38	V38L	V6490L	nonsyn	Gtt	Ctt	1	1	1	19732-19734
ORF1ab/nsp15A1-B	38	V38del1	V6490del1	del	Gtt	-tt	1	1	1	19732-19734
ORF1ab/nsp15A1-B	38	V38C	V6490C	nonsyn	GTt	TGt	1	1	1	19732-19734

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1754	1754	All	0.000335
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1256	1256	C.35	0.972136
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	214	214	B.1.2	0.001884
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	77	173	All	0.000015
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	65	173	All	0.000012
ORF1ab/nsp15A1-B	38	V38V	gtT	gtG	31	173	All	0.000006
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	167	168	All	0.000032
ORF1ab/nsp15A1-B	38	V38I	GtT	AtA	1	168	All	0
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	131	131	All	0.000025
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	73	73	AY.29	0.001151
ORF1ab/nsp15A1-B	38	V38V	gtT	gtG	22	48	B.1.1.7	0.00002
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	18	48	B.1.1.7	0.000016
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	8	48	B.1.1.7	0.000007
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	48	48	B.1.177.7	0.007913
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	47	47	B.1.1.7	0.000042
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	39	40	P.1	0.000614
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	40	P.1	0.000016
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	39	39	AY.75	0.002185
ORF1ab/nsp15A1-B	38	V38del	GTT	---	36	36	All	0.000007
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	27	27	B.1.1.7	0.000024
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	25	25	B.1	0.000229
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	22	22	B.1.617.2	0.000083
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	21	21	AY.103	0.00013
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	19	19	B.1.617.2	0.000072
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	18	18	B.1.1.7	0.000016
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	16	16	AY.121	0.002165
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	11	12	All	0.000002
ORF1ab/nsp15A1-B	38	V38G	gTT	gGC	1	12	All	0
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	12	12	AY.4	0.000019
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	11	11	AY.4	0.000017
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	10	10	AY.43	0.000044
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	9	9	AY.43	0.00004
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	8	8	AY.102	0.000212
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	8	8	B.1.1.372	0.00551
ORF1ab/nsp15A1-B	38	V38del	GTT	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	6	8	B.1.351	0.000178
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	2	8	B.1.351	0.000059
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	3	7	AY.4	0.000005
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	3	7	AY.4	0.000005
ORF1ab/nsp15A1-B	38	V38V	gtT	gtG	1	7	AY.4	0.000002
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	7	7	AY.9.2	0.000257
ORF1ab/nsp15A1-B	38	V38V	gtT	gtG	6	6	AY.113	0.000854
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	6	6	AY.3	0.00006
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	6	6	P.1.7	0.001916
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	5	5	AY.117	0.000423
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	3	5	AY.25	0.000018
ORF1ab/nsp15A1-B	38	V38V	gtT	gtG	2	5	AY.25	0.000012
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	5	5	AY.43	0.000022
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	5	5	B.1.177.81	0.000947
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	5	5	P.1	0.000079
ORF1ab/nsp15A1-B	38	V38D	gTt	gAt	4	4	All	0.000001
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	4	4	AY.25	0.000024
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	4	4	AY.44	0.000024
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	4	4	B.1	0.000037
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	4	4	B.1.1.1	0.001307
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	4	4	B.1.1.519	0.000159
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	4	4	B.1.160	0.000125
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	4	4	B.1.177	0.000053
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	4	4	B.1.177	0.000053
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	4	4	B.1.617.2	0.000015
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	4	4	P.1.14	0.000191
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	3	3	AY.118	0.000188
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	3	3	AY.57	0.001969
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	3	3	AY.71	0.001425
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	3	3	AY.99.1	0.004658
ORF1ab/nsp15A1-B	38	V38del	GTT	---	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	3	3	B.1.221	0.000213
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	3	3	B.1.590	0.013636
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	2	3	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	1	3	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	38	V38del	GTT	---	2	2		0.111111
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	2	2	AY.107	0.000932
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	2	2	AY.20	0.000078
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	2	2	AY.45	0.000243
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	2	2	AY.46	0.000208
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	2	2	AY.5	0.000041
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	AY.5	0.000041
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	AY.99.2	0.000184
ORF1ab/nsp15A1-B	38	V38del	GTT	---	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	38	V38del	GTT	---	2	2	B.1.1.315	0.016949
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	B.1.1.70	0.000682
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	2	B.1.177	0.000013
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	1	2	B.1.177	0.000013
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	2	2	B.1.177.87	0.001456
ORF1ab/nsp15A1-B	38	V38del	GTT	---	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	38	V38I	GtT	AtA	1	2	B.1.2	0.000009
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	2	B.1.2	0.000009
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	2	2	B.1.241	0.001623
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	B.1.311	0.000549
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	B.1.427	0.000101
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	2	2	B.1.466.2	0.000782
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	C.37	0.000232
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	38	V38del	GTT	---	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	2	2	R.1	0.00018
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	2	2	R.1	0.00018
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1		0.055556
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1		0.055556
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	1	1		0.055556
ORF1ab/nsp15A1-B	38	V38C	GTt	TGt	1	1		0.055556
ORF1ab/nsp15A1-B	38	V38S	GTt	AGt	1	1		0.055556
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	A	0.000387
ORF1ab/nsp15A1-B	38	V38L	Gtt	Ctt	1	1	All	0
ORF1ab/nsp15A1-B	38	V38del1	Gtt	-tt	1	1	All	0
ORF1ab/nsp15A1-B	38	V38S	GTt	AGt	1	1	All	0
ORF1ab/nsp15A1-B	38	V38C	GTt	TGt	1	1	All	0
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.109	0.00074
ORF1ab/nsp15A1-B	38	V38G	gTT	gGC	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	1	1	AY.37	0.000316
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.46.1	0.001027
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.57	0.000656
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.1.257	0.009709
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.1.277	0.000759
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.1.289	0.002083
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	B.1.1.301	0.001179
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.1.302	0.002075
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.1.428	0.009434
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.1.53	0.013699
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.159	0.012195
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	B.1.160.15	0.00495
ORF1ab/nsp15A1-B	38	V38L	Gtt	Ctt	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	38	V38D	gTt	gAt	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.177.86	0.000183
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.179	0.003759
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.258.17	0.000104
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.298	0.002114
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	1	1	B.1.311	0.000275
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.324	0.001605
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	38	V38D	gTt	gAt	1	1	B.1.400	0.000429
ORF1ab/nsp15A1-B	38	V38V	gtT	gtC	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	38	V38D	gTt	gAt	1	1	B.1.467	0.04
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.540	0.009709
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.565	0.00081
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	38	V38del1	Gtt	-tt	1	1	B.1.595	0.000261
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	38	V38D	gTt	gAt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.4	0.002208
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	C.2	0.016129
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	C.34	0.037037
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	38	V38V	gtT	gtA	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	38	V38G	gTt	gGt	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	38	V38del	GTT	---	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	38	V38A	gTt	gCt	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	38	V38I	Gtt	Att	1	1	P.1.2	0.001156
ORF1ab/nsp15A1-B	38	V38F	Gtt	Ttt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.