CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 335 | D335Y | D6787Y | nonsyn | Gat | Tat | 1518 | 1516 | 0.998682 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335Y | D6787Y | nonsyn | GaT | TaC | 1518 | 2 | 0.00131752 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335D | D6787D | syn | gaT | gaC | 1354 | 1354 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335F | D6787F | nonsyn | GAt | TTt | 1087 | 1086 | 0.99908 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335F | D6787F | nonsyn | GAT | TTC | 1087 | 1 | 0.000919963 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335N | D6787N | nonsyn | Gat | Aat | 275 | 275 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335G | D6787G | nonsyn | gAt | gGt | 89 | 89 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335del | D6787del | del | GAT | --- | 60 | 60 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335A | D6787A | nonsyn | gAt | gCt | 19 | 16 | 0.842105 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335A | D6787A | nonsyn | gAT | gCC | 19 | 2 | 0.105263 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335A | D6787A | nonsyn | gAT | gCG | 19 | 1 | 0.0526316 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335E | D6787E | nonsyn | gaT | gaA | 13 | 9 | 0.692308 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335E | D6787E | nonsyn | gaT | gaG | 13 | 4 | 0.307692 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335H | D6787H | nonsyn | Gat | Cat | 10 | 9 | 0.9 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335H | D6787H | nonsyn | GaT | CaC | 10 | 1 | 0.1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335V | D6787V | nonsyn | gAt | gTt | 7 | 5 | 0.714286 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335V | D6787V | nonsyn | gAT | gTG | 7 | 1 | 0.142857 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335V | D6787V | nonsyn | gAT | gTC | 7 | 1 | 0.142857 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335del1 | D6787del1 | del | gaT | ga- | 6 | 6 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335del2 | D6787del2 | del | gAT | g-- | 4 | 4 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335S | D6787S | nonsyn | GAT | TCC | 3 | 1 | 0.333333 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335S | D6787S | nonsyn | GAt | AGt | 3 | 1 | 0.333333 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335S | D6787S | nonsyn | GAT | TCG | 3 | 1 | 0.333333 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335T | D6787T | nonsyn | GAT | ACG | 2 | 1 | 0.5 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335T | D6787T | nonsyn | GAT | ACC | 2 | 1 | 0.5 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335P | D6787P | nonsyn | GAT | CCC | 1 | 1 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335L | D6787L | nonsyn | GAT | TTG | 1 | 1 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335M | D6787M | nonsyn | GAT | ATG | 1 | 1 | 1 | 20623-20625 |
ORF1ab/nsp15A1-B | 335 | D335I | D6787I | nonsyn | GAT | ATC | 1 | 1 | 1 | 20623-20625 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1516 | 1518 | All | 0.00029 |
ORF1ab/nsp15A1-B | 335 | D335Y | GaT | TaC | 2 | 1518 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1354 | 1354 | All | 0.000259 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 1086 | 1087 | All | 0.000208 |
ORF1ab/nsp15A1-B | 335 | D335F | GAT | TTC | 1 | 1087 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 983 | 983 | B.1.389 | 0.98497 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 980 | 980 | AY.44 | 0.005965 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 416 | 416 | B.1.617.2 | 0.001566 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 275 | 275 | All | 0.000053 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 261 | 261 | AY.43 | 0.001156 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 96 | 96 | B.1 | 0.000879 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 91 | 91 | AY.4 | 0.000142 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 89 | 89 | All | 0.000017 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 87 | 87 | B.1.526 | 0.002045 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 87 | 87 | P.1 | 0.001371 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 74 | 74 | B.1.1.37 | 0.014272 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 73 | 73 | AY.25 | 0.000439 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 65 | 65 | B.1.1.7 | 0.000058 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 60 | 60 | All | 0.000011 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 55 | 55 | B.1.1.7 | 0.000049 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 34 | 34 | AY.102 | 0.000901 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 32 | 32 | AY.34.1 | 0.016318 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 32 | 32 | AY.44 | 0.000195 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 26 | 26 | AY.99.2 | 0.002396 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 24 | 24 | AY.39.1 | 0.000951 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 22 | 22 | AY.4.5 | 0.002365 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 20 | 20 | AY.98 | 0.00158 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 20 | 20 | B.1.177.32 | 0.026991 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 16 | 19 | All | 0.000003 |
ORF1ab/nsp15A1-B | 335 | D335A | gAT | gCC | 2 | 19 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335A | gAT | gCG | 1 | 19 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 17 | 17 | AY.34 | 0.001648 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 17 | 17 | AY.92 | 0.004884 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 16 | 16 | AY.12 | 0.005057 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 15 | 15 | B.1.177.73 | 0.008494 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 9 | 13 | All | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaG | 4 | 13 | All | 0.000001 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 11 | 13 | B.1 | 0.000101 |
ORF1ab/nsp15A1-B | 335 | D335Y | GaT | TaC | 2 | 13 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp15A1-B | 335 | D335H | Gat | Cat | 9 | 10 | All | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335H | GaT | CaC | 1 | 10 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 8 | 8 | B.1.378 | 0.054795 |
ORF1ab/nsp15A1-B | 335 | D335V | gAt | gTt | 5 | 7 | All | 0.000001 |
ORF1ab/nsp15A1-B | 335 | D335V | gAT | gTC | 1 | 7 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335V | gAT | gTG | 1 | 7 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 6 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 6 | 6 | AY.90 | 0.004107 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp15A1-B | 335 | D335H | Gat | Cat | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp15A1-B | 335 | D335del2 | gAT | g-- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaG | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp15A1-B | 335 | D335S | GAt | AGt | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335S | GAT | TCG | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335S | GAT | TCC | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp15A1-B | 335 | D335T | GAT | ACG | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335T | GAT | ACC | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 335 | D335S | GAT | TCG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335V | gAT | gTG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335A | gAT | gCG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335A | gAT | gCC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335T | GAT | ACC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335T | GAT | ACG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335S | GAT | TCC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335V | gAT | gTC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp15A1-B | 335 | D335del2 | gAT | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.177.55 | 0.004662 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 2 | 2 | B.1.177.80 | 0.003824 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 335 | D335M | GAT | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335L | GAT | TTG | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335I | GAT | ATC | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335P | GAT | CCC | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 335 | D335A | gAT | gCC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 335 | D335H | GaT | CaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 335 | D335P | GAT | CCC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 335 | D335H | Gat | Cat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335del2 | gAT | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335L | GAT | TTG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335F | GAT | TTC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335M | GAT | ATG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335I | GAT | ATC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 335 | D335H | Gat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 335 | D335V | gAt | gTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 335 | D335V | gAt | gTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 335 | D335H | Gat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp15A1-B | 335 | D335H | Gat | Cat | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp15A1-B | 335 | D335S | GAt | AGt | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 335 | D335V | gAt | gTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp15A1-B | 335 | D335del2 | gAT | g-- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 335 | D335A | gAt | gCt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp15A1-B | 335 | D335F | GAt | TTt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp15A1-B | 335 | D335V | gAt | gTt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp15A1-B | 335 | D335V | gAt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 335 | D335Y | Gat | Tat | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 335 | D335N | Gat | Aat | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 335 | D335G | gAt | gGt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 335 | D335E | gaT | gaA | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 335 | D335del1 | gaT | ga- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 335 | D335D | gaT | gaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 335 | D335del | GAT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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