CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 33 & Codon = aTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	33	T33I	T6485I	nonsyn	aCa	aTa	13558	13558	1	19717-19719

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	13558	13558	All	0.002593
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4563	4563	AD.2	0.999124
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2876	2876	B.1.1.70	0.9809
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	854	854	AY.4	0.001329
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	721	721	B.1.1.7	0.000645
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	665	665	AP.1	0.998498
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	260	260	B.1.617.2	0.000979
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	239	239	AD.1	0.983539
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	215	215	B.1.2	0.001893
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	185	185	B.1.517.1	0.973684
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	182	182	AY.103	0.00113
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	177	177	B.1	0.001621
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	159	159	AY.43	0.000704
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	143	143	AY.44	0.00087
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	137	137	B.1.1	0.002485
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	132	132	B.1.526	0.003103
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	106	106	B.1.177	0.001396
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	105	105	B.1.1.315	0.889831
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	82	82	B.1.126	0.104592
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	72	72	AY.25	0.000433
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	69	69	B.1.240	0.014874
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	62	62	B.1.258	0.004126
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	61	61	AY.5	0.00126
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	57	57	AY.98.1	0.002761
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	51	51	AY.3	0.000507
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	42	42	AY.29	0.000662
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	39	39	AY.94	0.017264
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	38	38	AY.100	0.001748
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	36	36	B.1.311	0.009885
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	35	35	P.1	0.000551
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	34	34	B.1.429	0.0008
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	34	34	B.1.565	0.027553
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	33	33	B.1.177.60	0.007208
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	27	27	B.1.1.1	0.008821
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	24	24	AY.26	0.000679
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	24	24	AY.47	0.000747
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	24	24	B.1.1.506	0.888889
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	22	22	AD.2.1	1
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	22	22	AY.4.2	0.000477
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	21	21	B.1.351	0.000624
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	20	20	AY.102	0.00053
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	20	20	B.1.111	0.023502
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	20	20	B.1.258.17	0.002079
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	19	19	B.1.160	0.000593
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	19	19	B.1.36.35	0.049479
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	17	17	B.1.177.10	0.014925
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	16	16	AY.34	0.001551
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	16	16	AY.39.1	0.000634
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	16	16	AY.4.5	0.00172
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	16	16	B.1.221	0.001137
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	15	15	AY.39	0.000371
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	15	15	B.1.36.8	0.015
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	14	14	AY.46	0.001457
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	14	14	B.1.177.81	0.002651
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	14	14	B.1.243	0.000974
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	13	13	AY.120	0.000483
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	13	13	AY.27	0.000841
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	12	12	A.19	0.113208
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	12	12	AY.114	0.002773
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	12	12	AY.98	0.000948
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	11	11	AY.20	0.000428
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	11	11	B.1.1.519	0.000437
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	10	10	AY.3.1	0.000853
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	10	10	AY.99.2	0.000922
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	10	10	B.1.427	0.000505
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	9	9	AY.30	0.003562
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	9	9	AY.68	0.002464
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	9	9	AY.9.2	0.000331
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	9	9	B.1.1.221	0.090909
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	9	9	B.1.1.434	0.003137
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	9	9	B.1.396	0.006351
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	8	8	AY.36	0.001186
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	8	8	B.1.1.222	0.001632
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	8	8	B.1.1.51	0.013746
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	8	8	B.1.160.32	0.034335
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	8	8	B.1.221.3	0.006667
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	A	0.002709
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	AY.101	0.003433
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	AY.119	0.000247
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	B.1.517	0.002989
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	B.1.546	0.025926
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	B.1.596	0.00061
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	7	7	R.1	0.00063
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AW.1	0.018293
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AY.118	0.000376
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AY.33	0.000401
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AY.45	0.00073
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AY.46.6	0.000433
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AY.6	0.000247
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	AY.9	0.000406
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	B.1.1.305	0.023166
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	B.1.1.416	0.00543
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	B.1.628	0.002114
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	6	6	P.1.14	0.000287
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	AY.110	0.000563
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	AY.116	0.001434
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	AY.14	0.00044
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	AY.23	0.000349
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	AY.75	0.00028
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	AY.84	0.002187
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.1.135	0.023474
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.1.243	0.020408
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.1.284	0.000537
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.1.420	0.00503
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.1.63	0.001929
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.160.28	0.01462
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.177.44	0.002595
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	B.1.36	0.00073
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	5	5	Q.1	0.000632
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	AY.42	0.000161
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	AY.95	0.003044
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B	0.000511
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B.1.1.214	0.000222
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B.1.1.25	0.002274
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B.1.177.12	0.000607
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B.1.232	0.002149
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B.1.234	0.000528
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	B.1.621	0.000354
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	4	4	P.2	0.000747
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	A.23.1	0.002113
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	AY.121	0.000406
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	AY.13	0.000483
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	AY.24	0.001293
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	AY.29.1	0.000662
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	AY.51	0.002727
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	AY.7	0.000588
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	B.1.177.77	0.002179
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	B.1.36.18	0.001261
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	B.1.400	0.001287
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	B.1.428	0.003061
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	B.1.466.2	0.001174
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	C.35	0.002322
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	D.2	0.000225
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	3	3	P.5	0.041096
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	A.1	0.000564
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	A.2.5.2	0.003145
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.106	0.00067
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.116.1	0.000623
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.120.2.1	0.000997
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.16	0.000759
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.2	0.000712
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.35	0.000466
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.61	0.00021
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.63	0.000774
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.65	0.001066
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.69	0.000373
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.7.1	0.000225
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.70	0.000417
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.9.1	0.000167
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	AY.93	0.000546
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.1.10	0.00223
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.1.141	0.004024
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.1.170	0.002494
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.1.316	0.00185
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.1.39	0.001019
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.177.31	0.022989
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.177.73	0.001133
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.177.80	0.003824
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.210	0.004264
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.350	0.005865
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.367	0.001585
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.369	0.00057
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.445	0.023529
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.499	0.002101
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.561	0.000794
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	B.1.597	0.009259
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	C.1.2	0.008511
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	C.32	0.046512
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	2	2	Q.8	0.00033
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	A.2.5	0.000499
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	A.21	0.00277
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	A.27	0.001656
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.1	0.000396
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.12	0.000316
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.17	0.008197
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.4.1	0.000737
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.46.1	0.001027
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.53	0.000288
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.78	0.001541
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.82	0.001357
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.89	0.004902
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.96	0.002075
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AY.99.1	0.001553
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.122	0.045455
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.161	0.003534
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.174	0.003378
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.216	0.00089
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.220	0.001859
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.253	0.002506
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.273	0.006757
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.294	0.001266
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.318	0.000302
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.348	0.000796
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.362	0.005618
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.375	0.011905
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.389	0.006061
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.407	0.041667
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.433	0.001425
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.464	0.001473
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.47	0.005348
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.517	0.006803
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.528	0.004808
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.56	0.017857
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.1.57	0.011494
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.119	0.010526
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.127	0.002198
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.128	0.000635
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.142	0.002899
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.146	0.004237
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.147	0.000756
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.160.23	0.004831
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.170	0.00431
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.21	0.000076
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.35	0.000691
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.41	0.0025
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.45	0.000381
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.46	0.000918
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.54	0.000606
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.57	0.000281
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.58	0.001332
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.8	0.000752
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.82	0.000477
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.177.83	0.001481
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.206	0.000816
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.222	0.001692
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.236	0.002053
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.239	0.001221
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.258.11	0.000396
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.258.20	0.015873
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.258.3	0.001675
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.260	0.003344
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.279	0.000514
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.280	0.007143
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.301	0.005917
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.324	0.001605
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.329	0.000608
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.349	0.000715
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.351.1	0.038462
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.36.12	0.009615
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.420	0.010417
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.456	0.003268
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.462	0.007246
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.473	0.019231
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.487	0.019608
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.506	0.02381
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.511	0.034483
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.530	0.007143
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.533	0.009615
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.588	0.00091
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.596.1	0.009346
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.1.627	0.00202
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.23	0.002924
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	B.52	0.010101
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	C.14	0.004329
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	D.5	0.004975
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	N.4	0.004255
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	Q.4	0.000455
ORF1ab/nsp15A1-B	33	T33I	aCa	aTa	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.