CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 33

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B33T33IT6485InonsynaCaaTa1355813558119717-19719
ORF1ab/nsp15A1-B33T33TT6485TsynacAacG3292620.79635319717-19719
ORF1ab/nsp15A1-B33T33TT6485TsynacAacT329580.17629219717-19719
ORF1ab/nsp15A1-B33T33TT6485TsynacAacC32990.027355619717-19719
ORF1ab/nsp15A1-B33T33AT6485AnonsynAcaGca5757119717-19719
ORF1ab/nsp15A1-B33T33delT6485deldelACA---3939119717-19719
ORF1ab/nsp15A1-B33T33KT6485KnonsynaCaaAa2424119717-19719
ORF1ab/nsp15A1-B33T33del1T6485del1delacAac-21190.90476219717-19719
ORF1ab/nsp15A1-B33T33del1T6485del1delAca-ca2110.04761919717-19719
ORF1ab/nsp15A1-B33T33del1T6485del1delaCaa-a2110.04761919717-19719
ORF1ab/nsp15A1-B33T33VT6485VnonsynACaGTa1212119717-19719
ORF1ab/nsp15A1-B33T33ST6485SnonsynAcaTca66119717-19719
ORF1ab/nsp15A1-B33T33RT6485RnonsynaCaaGa55119717-19719
ORF1ab/nsp15A1-B33T33PT6485PnonsynAcaCca210.519717-19719
ORF1ab/nsp15A1-B33T33PT6485PnonsynAcACcC210.519717-19719
ORF1ab/nsp15A1-B33T33HT6485HnonsynACACAC11119717-19719
ORF1ab/nsp15A1-B33T33QT6485QnonsynACaCAa11119717-19719
ORF1ab/nsp15A1-B33T33NT6485NnonsynaCAaAC11119717-19719
ORF1ab/nsp15A1-B33T33LT6485LnonsynACaCTa11119717-19719

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B33T33IaCaaTa1355813558All0.002593
ORF1ab/nsp15A1-B33T33IaCaaTa45634563AD.20.999124
ORF1ab/nsp15A1-B33T33IaCaaTa28762876B.1.1.700.9809
ORF1ab/nsp15A1-B33T33IaCaaTa854854AY.40.001329
ORF1ab/nsp15A1-B33T33IaCaaTa721721B.1.1.70.000645
ORF1ab/nsp15A1-B33T33IaCaaTa665665AP.10.998498
ORF1ab/nsp15A1-B33T33TacAacG262329All0.00005
ORF1ab/nsp15A1-B33T33TacAacT58329All0.000011
ORF1ab/nsp15A1-B33T33TacAacC9329All0.000002
ORF1ab/nsp15A1-B33T33IaCaaTa260260B.1.617.20.000979
ORF1ab/nsp15A1-B33T33IaCaaTa239239AD.10.983539
ORF1ab/nsp15A1-B33T33IaCaaTa215215B.1.20.001893
ORF1ab/nsp15A1-B33T33IaCaaTa185185B.1.517.10.973684
ORF1ab/nsp15A1-B33T33IaCaaTa182182AY.1030.00113
ORF1ab/nsp15A1-B33T33IaCaaTa177177B.10.001621
ORF1ab/nsp15A1-B33T33IaCaaTa159159AY.430.000704
ORF1ab/nsp15A1-B33T33IaCaaTa143143AY.440.00087
ORF1ab/nsp15A1-B33T33IaCaaTa137137B.1.10.002485
ORF1ab/nsp15A1-B33T33IaCaaTa132132B.1.5260.003103
ORF1ab/nsp15A1-B33T33TacAacG107107B.1.4270.005403
ORF1ab/nsp15A1-B33T33IaCaaTa106106B.1.1770.001396
ORF1ab/nsp15A1-B33T33IaCaaTa105105B.1.1.3150.889831
ORF1ab/nsp15A1-B33T33IaCaaTa8282B.1.1260.104592
ORF1ab/nsp15A1-B33T33TacAacG6578AY.39.10.002575
ORF1ab/nsp15A1-B33T33TacAacT1378AY.39.10.000515
ORF1ab/nsp15A1-B33T33IaCaaTa7272AY.250.000433
ORF1ab/nsp15A1-B33T33IaCaaTa6969B.1.2400.014874
ORF1ab/nsp15A1-B33T33IaCaaTa6262B.1.2580.004126
ORF1ab/nsp15A1-B33T33IaCaaTa6161AY.50.00126
ORF1ab/nsp15A1-B33T33AAcaGca5757All0.000011
ORF1ab/nsp15A1-B33T33IaCaaTa5757AY.98.10.002761
ORF1ab/nsp15A1-B33T33IaCaaTa5151AY.30.000507
ORF1ab/nsp15A1-B33T33IaCaaTa4242AY.290.000662
ORF1ab/nsp15A1-B33T33delACA---3939All0.000007
ORF1ab/nsp15A1-B33T33IaCaaTa3939AY.940.017264
ORF1ab/nsp15A1-B33T33IaCaaTa3838AY.1000.001748
ORF1ab/nsp15A1-B33T33IaCaaTa3636B.1.3110.009885
ORF1ab/nsp15A1-B33T33IaCaaTa3535P.10.000551
ORF1ab/nsp15A1-B33T33IaCaaTa3434B.1.4290.0008
ORF1ab/nsp15A1-B33T33IaCaaTa3434B.1.5650.027553
ORF1ab/nsp15A1-B33T33IaCaaTa3333B.1.177.600.007208
ORF1ab/nsp15A1-B33T33IaCaaTa2727B.1.1.10.008821
ORF1ab/nsp15A1-B33T33KaCaaAa2424All0.000005
ORF1ab/nsp15A1-B33T33IaCaaTa2424AY.260.000679
ORF1ab/nsp15A1-B33T33IaCaaTa2424AY.470.000747
ORF1ab/nsp15A1-B33T33IaCaaTa2424B.1.1.5060.888889
ORF1ab/nsp15A1-B33T33TacAacT2222A.50.042308
ORF1ab/nsp15A1-B33T33IaCaaTa2222AD.2.11
ORF1ab/nsp15A1-B33T33IaCaaTa2222AY.4.20.000477
ORF1ab/nsp15A1-B33T33del1acAac-1921All0.000004
ORF1ab/nsp15A1-B33T33del1Aca-ca121All0
ORF1ab/nsp15A1-B33T33del1aCaa-a121All0
ORF1ab/nsp15A1-B33T33IaCaaTa2121B.1.3510.000624
ORF1ab/nsp15A1-B33T33IaCaaTa2020AY.1020.00053
ORF1ab/nsp15A1-B33T33IaCaaTa2020B.1.1110.023502
ORF1ab/nsp15A1-B33T33IaCaaTa2020B.1.258.170.002079
ORF1ab/nsp15A1-B33T33IaCaaTa1919B.1.1600.000593
ORF1ab/nsp15A1-B33T33IaCaaTa1919B.1.36.350.049479
ORF1ab/nsp15A1-B33T33IaCaaTa1717B.1.177.100.014925
ORF1ab/nsp15A1-B33T33IaCaaTa1616AY.340.001551
ORF1ab/nsp15A1-B33T33IaCaaTa1616AY.39.10.000634
ORF1ab/nsp15A1-B33T33IaCaaTa1616AY.4.50.00172
ORF1ab/nsp15A1-B33T33IaCaaTa1616B.1.2210.001137
ORF1ab/nsp15A1-B33T33IaCaaTa1515AY.390.000371
ORF1ab/nsp15A1-B33T33TacAacG1415B.1.1.70.000013
ORF1ab/nsp15A1-B33T33TacAacT115B.1.1.70.000001
ORF1ab/nsp15A1-B33T33IaCaaTa1515B.1.36.80.015
ORF1ab/nsp15A1-B33T33TacAacG1115B.1.617.20.000041
ORF1ab/nsp15A1-B33T33TacAacT415B.1.617.20.000015
ORF1ab/nsp15A1-B33T33AAcaGca1414AY.1160.004015
ORF1ab/nsp15A1-B33T33IaCaaTa1414AY.460.001457
ORF1ab/nsp15A1-B33T33IaCaaTa1414B.1.177.810.002651
ORF1ab/nsp15A1-B33T33IaCaaTa1414B.1.2430.000974
ORF1ab/nsp15A1-B33T33IaCaaTa1313AY.1200.000483
ORF1ab/nsp15A1-B33T33IaCaaTa1313AY.270.000841
ORF1ab/nsp15A1-B33T33IaCaaTa1212A.190.113208
ORF1ab/nsp15A1-B33T33VACaGTa1212All0.000002
ORF1ab/nsp15A1-B33T33IaCaaTa1212AY.1140.002773
ORF1ab/nsp15A1-B33T33TacAacG812AY.250.000048
ORF1ab/nsp15A1-B33T33TacAacC412AY.250.000024
ORF1ab/nsp15A1-B33T33VACaGTa1212AY.690.00224
ORF1ab/nsp15A1-B33T33IaCaaTa1212AY.980.000948
ORF1ab/nsp15A1-B33T33IaCaaTa1111AY.200.000428
ORF1ab/nsp15A1-B33T33IaCaaTa1111B.1.1.5190.000437
ORF1ab/nsp15A1-B33T33IaCaaTa1010AY.3.10.000853
ORF1ab/nsp15A1-B33T33IaCaaTa1010AY.99.20.000922
ORF1ab/nsp15A1-B33T33KaCaaAa1010B.1.1.70.000009
ORF1ab/nsp15A1-B33T33delACA---1010B.1.1.70.000009
ORF1ab/nsp15A1-B33T33IaCaaTa1010B.1.4270.000505
ORF1ab/nsp15A1-B33T33IaCaaTa99AY.300.003562
ORF1ab/nsp15A1-B33T33TacAacT69AY.40.000009
ORF1ab/nsp15A1-B33T33TacAacC29AY.40.000003
ORF1ab/nsp15A1-B33T33TacAacG19AY.40.000002
ORF1ab/nsp15A1-B33T33IaCaaTa99AY.680.002464
ORF1ab/nsp15A1-B33T33IaCaaTa99AY.9.20.000331
ORF1ab/nsp15A1-B33T33IaCaaTa99B.1.1.2210.090909
ORF1ab/nsp15A1-B33T33IaCaaTa99B.1.1.4340.003137
ORF1ab/nsp15A1-B33T33IaCaaTa99B.1.3960.006351
ORF1ab/nsp15A1-B33T33AAcaGca88AY.250.000048
ORF1ab/nsp15A1-B33T33IaCaaTa88AY.360.001186
ORF1ab/nsp15A1-B33T33AAcaGca88AY.4.20.000174
ORF1ab/nsp15A1-B33T33TacAacG88AY.610.000838
ORF1ab/nsp15A1-B33T33IaCaaTa88B.1.1.2220.001632
ORF1ab/nsp15A1-B33T33IaCaaTa88B.1.1.510.013746
ORF1ab/nsp15A1-B33T33IaCaaTa88B.1.160.320.034335
ORF1ab/nsp15A1-B33T33IaCaaTa88B.1.221.30.006667
ORF1ab/nsp15A1-B33T33IaCaaTa77A0.002709
ORF1ab/nsp15A1-B33T33IaCaaTa77AY.1010.003433
ORF1ab/nsp15A1-B33T33IaCaaTa77AY.1190.000247
ORF1ab/nsp15A1-B33T33TacAacG77B.1.20.000062
ORF1ab/nsp15A1-B33T33IaCaaTa77B.1.5170.002989
ORF1ab/nsp15A1-B33T33KaCaaAa77B.1.5250.000792
ORF1ab/nsp15A1-B33T33IaCaaTa77B.1.5460.025926
ORF1ab/nsp15A1-B33T33IaCaaTa77B.1.5960.00061
ORF1ab/nsp15A1-B33T33IaCaaTa77R.10.00063
ORF1ab/nsp15A1-B33T33SAcaTca66All0.000001
ORF1ab/nsp15A1-B33T33IaCaaTa66AW.10.018293
ORF1ab/nsp15A1-B33T33IaCaaTa66AY.1180.000376
ORF1ab/nsp15A1-B33T33AAcaGca66AY.1180.000376
ORF1ab/nsp15A1-B33T33IaCaaTa66AY.330.000401
ORF1ab/nsp15A1-B33T33IaCaaTa66AY.450.00073
ORF1ab/nsp15A1-B33T33IaCaaTa66AY.46.60.000433
ORF1ab/nsp15A1-B33T33IaCaaTa66AY.60.000247
ORF1ab/nsp15A1-B33T33IaCaaTa66AY.90.000406
ORF1ab/nsp15A1-B33T33IaCaaTa66B.1.1.3050.023166
ORF1ab/nsp15A1-B33T33IaCaaTa66B.1.1.4160.00543
ORF1ab/nsp15A1-B33T33IaCaaTa66B.1.6280.002114
ORF1ab/nsp15A1-B33T33IaCaaTa66P.1.140.000287
ORF1ab/nsp15A1-B33T33RaCaaGa55All0.000001
ORF1ab/nsp15A1-B33T33IaCaaTa55AY.1100.000563
ORF1ab/nsp15A1-B33T33IaCaaTa55AY.1160.001434
ORF1ab/nsp15A1-B33T33IaCaaTa55AY.140.00044
ORF1ab/nsp15A1-B33T33IaCaaTa55AY.230.000349
ORF1ab/nsp15A1-B33T33TacAacG45AY.30.00004
ORF1ab/nsp15A1-B33T33TacAacC15AY.30.00001
ORF1ab/nsp15A1-B33T33TacAacT25AY.430.000009
ORF1ab/nsp15A1-B33T33TacAacG25AY.430.000009
ORF1ab/nsp15A1-B33T33TacAacC15AY.430.000004
ORF1ab/nsp15A1-B33T33IaCaaTa55AY.750.00028
ORF1ab/nsp15A1-B33T33IaCaaTa55AY.840.002187
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.1.1350.023474
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.1.2430.020408
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.1.2840.000537
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.1.4200.00503
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.1.630.001929
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.160.280.01462
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.177.440.002595
ORF1ab/nsp15A1-B33T33IaCaaTa55B.1.360.00073
ORF1ab/nsp15A1-B33T33IaCaaTa55Q.10.000632
ORF1ab/nsp15A1-B33T33TacAacG44AY.390.000099
ORF1ab/nsp15A1-B33T33IaCaaTa44AY.420.000161
ORF1ab/nsp15A1-B33T33IaCaaTa44AY.950.003044
ORF1ab/nsp15A1-B33T33IaCaaTa44B0.000511
ORF1ab/nsp15A1-B33T33TacAacG44B.1.10.000073
ORF1ab/nsp15A1-B33T33IaCaaTa44B.1.1.2140.000222
ORF1ab/nsp15A1-B33T33TacAacT44B.1.1.2220.000816
ORF1ab/nsp15A1-B33T33IaCaaTa44B.1.1.250.002274
ORF1ab/nsp15A1-B33T33IaCaaTa44B.1.177.120.000607
ORF1ab/nsp15A1-B33T33AAcaGca44B.1.20.000035
ORF1ab/nsp15A1-B33T33del1acAac-44B.1.20.000035
ORF1ab/nsp15A1-B33T33IaCaaTa44B.1.2320.002149
ORF1ab/nsp15A1-B33T33IaCaaTa44B.1.2340.000528
ORF1ab/nsp15A1-B33T33IaCaaTa44B.1.6210.000354
ORF1ab/nsp15A1-B33T33IaCaaTa44P.20.000747
ORF1ab/nsp15A1-B33T33IaCaaTa33A.23.10.002113
ORF1ab/nsp15A1-B33T33IaCaaTa33AY.1210.000406
ORF1ab/nsp15A1-B33T33IaCaaTa33AY.130.000483
ORF1ab/nsp15A1-B33T33IaCaaTa33AY.240.001293
ORF1ab/nsp15A1-B33T33IaCaaTa33AY.29.10.000662
ORF1ab/nsp15A1-B33T33AAcaGca33AY.40.000005
ORF1ab/nsp15A1-B33T33AAcaGca33AY.440.000018
ORF1ab/nsp15A1-B33T33IaCaaTa33AY.510.002727
ORF1ab/nsp15A1-B33T33IaCaaTa33AY.70.000588
ORF1ab/nsp15A1-B33T33delACA---33B.1.10.000054
ORF1ab/nsp15A1-B33T33TacAacG33B.1.1.2510.02381
ORF1ab/nsp15A1-B33T33TacAacG33B.1.1.500.002037
ORF1ab/nsp15A1-B33T33SAcaTca33B.1.1.70.000003
ORF1ab/nsp15A1-B33T33TacAacG33B.1.1770.00004
ORF1ab/nsp15A1-B33T33IaCaaTa33B.1.177.770.002179
ORF1ab/nsp15A1-B33T33IaCaaTa33B.1.36.180.001261
ORF1ab/nsp15A1-B33T33IaCaaTa33B.1.4000.001287
ORF1ab/nsp15A1-B33T33IaCaaTa33B.1.4280.003061
ORF1ab/nsp15A1-B33T33IaCaaTa33B.1.466.20.001174
ORF1ab/nsp15A1-B33T33IaCaaTa33C.350.002322
ORF1ab/nsp15A1-B33T33IaCaaTa33D.20.000225
ORF1ab/nsp15A1-B33T33IaCaaTa33P.50.041096
ORF1ab/nsp15A1-B33T33delACA---220.111111
ORF1ab/nsp15A1-B33T33del1acAac-220.111111
ORF1ab/nsp15A1-B33T33PAcaCca120.055556
ORF1ab/nsp15A1-B33T33PAcACcC120.055556
ORF1ab/nsp15A1-B33T33IaCaaTa22A.10.000564
ORF1ab/nsp15A1-B33T33IaCaaTa22A.2.5.20.003145
ORF1ab/nsp15A1-B33T33PAcACcC12All0
ORF1ab/nsp15A1-B33T33PAcaCca12All0
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.1060.00067
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.116.10.000623
ORF1ab/nsp15A1-B33T33AAcaGca22AY.1190.000071
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.120.2.10.000997
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.160.000759
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.20.000712
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.350.000466
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.540.000191
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.610.00021
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.630.000774
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.650.001066
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.690.000373
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.7.10.000225
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.700.000417
ORF1ab/nsp15A1-B33T33TacAacG22AY.75.10.000361
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.9.10.000167
ORF1ab/nsp15A1-B33T33IaCaaTa22AY.930.000546
ORF1ab/nsp15A1-B33T33del1acAac-22B.10.000018
ORF1ab/nsp15A1-B33T33delACA---22B.10.000018
ORF1ab/nsp15A1-B33T33del1Aca-ca12B.1.10.000018
ORF1ab/nsp15A1-B33T33del1acAac-12B.1.10.000018
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.1.100.00223
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.1.1410.004024
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.1.1700.002494
ORF1ab/nsp15A1-B33T33delACA---22B.1.1.3150.016949
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.1.3160.00185
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.1.390.001019
ORF1ab/nsp15A1-B33T33AAcaGca22B.1.1.70.000002
ORF1ab/nsp15A1-B33T33RaCaaGa22B.1.1770.000026
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.177.310.022989
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.177.730.001133
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.177.800.003824
ORF1ab/nsp15A1-B33T33delACA---22B.1.20.000018
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.2100.004264
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.3500.005865
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.3670.001585
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.3690.00057
ORF1ab/nsp15A1-B33T33TacAacG22B.1.4290.000047
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.4450.023529
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.4990.002101
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.5610.000794
ORF1ab/nsp15A1-B33T33IaCaaTa22B.1.5970.009259
ORF1ab/nsp15A1-B33T33IaCaaTa22C.1.20.008511
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