CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 327
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF1ab/nsp15A1-B | 327 | I327L | I6779L | nonsyn | Att | Ctt | 822 | 822 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327T | I6779T | nonsyn | aTt | aCt | 501 | 501 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327V | I6779V | nonsyn | Att | Gtt | 334 | 334 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327I | I6779I | syn | atT | atC | 129 | 126 | 0.976744 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327I | I6779I | syn | atT | atA | 129 | 3 | 0.0232558 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327del | I6779del | del | ATT | --- | 87 | 87 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327S | I6779S | nonsyn | aTt | aGt | 58 | 58 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327N | I6779N | nonsyn | aTt | aAt | 43 | 43 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327M | I6779M | nonsyn | atT | atG | 21 | 21 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | I6779del1 | del | aTt | a-t | 8 | 4 | 0.5 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | I6779del1 | del | Att | -tt | 8 | 2 | 0.25 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | I6779del1 | del | AtT | -tG | 8 | 1 | 0.125 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | I6779del1 | del | AtT | -tW | 8 | 1 | 0.125 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327F | I6779F | nonsyn | Att | Ttt | 4 | 4 | 1 | 20599-20601 |
| ORF1ab/nsp15A1-B | 327 | I327A | I6779A | nonsyn | ATt | GCt | 2 | 2 | 1 | 20599-20601 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 822 | 822 | All | 0.000157 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 739 | 739 | W.4 | 0.998649 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 501 | 501 | All | 0.000096 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 334 | 334 | All | 0.000064 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 156 | 156 | B.1.258.17 | 0.01622 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 126 | 129 | All | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atA | 3 | 129 | All | 0.000001 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 129 | 129 | R.1 | 0.011611 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 87 | 87 | All | 0.000017 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 74 | 74 | B.1.1.7 | 0.000066 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 58 | 58 | All | 0.000011 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 46 | 46 | B.1.1.222 | 0.009384 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 44 | 44 | B.1 | 0.000403 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 44 | 44 | B.1.1.7 | 0.000039 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 43 | 43 | All | 0.000008 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 40 | 40 | B.1.617.2 | 0.000151 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 33 | 33 | AY.4 | 0.000051 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 33 | 33 | B.1.177 | 0.000435 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 30 | 30 | AY.4.5 | 0.003225 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 28 | 28 | B.1.1.7 | 0.000025 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 27 | 27 | AY.119 | 0.000953 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 25 | 25 | B.1.1.7 | 0.000022 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 25 | 25 | B.1.177.77 | 0.018155 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 24 | 24 | AY.4 | 0.000037 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 23 | 23 | AL.1 | 0.298701 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 22 | 22 | AY.4 | 0.000034 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 21 | 21 | All | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 21 | 21 | AY.25 | 0.000126 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 17 | 17 | B.1.1.174 | 0.057432 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 17 | 17 | B.1.160 | 0.00053 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 14 | 15 | B.1.1.7 | 0.000013 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atA | 1 | 15 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 12 | 12 | B.1.617.2 | 0.000045 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 11 | 11 | AY.27 | 0.000712 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 11 | 11 | AY.44 | 0.000067 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 10 | 10 | P.1 | 0.000158 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 8 | 8 | 0.444444 | |
| ORF1ab/nsp15A1-B | 327 | I327del1 | aTt | a-t | 4 | 8 | All | 0.000001 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | Att | -tt | 2 | 8 | All | 0 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | AtT | -tG | 1 | 8 | All | 0 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | AtT | -tW | 1 | 8 | All | 0 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 8 | 8 | B.1.177.81 | 0.001515 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 8 | 8 | B.1.2 | 0.00007 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 7 | 7 | AY.103 | 0.000043 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 7 | 7 | B.1.617.2 | 0.000026 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 6 | 6 | AY.4 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 6 | 6 | AY.9.2 | 0.00022 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 6 | 6 | B.1 | 0.000055 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 6 | 6 | B.1.2 | 0.000053 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 5 | 5 | AY.20 | 0.000194 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 5 | 5 | AY.45 | 0.000608 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 5 | 5 | B.1 | 0.000046 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 5 | 5 | B.1.427 | 0.000252 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 5 | 5 | B.1.617.2 | 0.000019 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 5 | 5 | B.1.621 | 0.000443 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 5 | 5 | C.1 | 0.011962 |
| ORF1ab/nsp15A1-B | 327 | I327F | Att | Ttt | 4 | 4 | All | 0.000001 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 4 | 4 | AY.25 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 4 | 4 | AY.3 | 0.00004 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 4 | 4 | AY.4 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 4 | 4 | AY.4 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 4 | 4 | AY.44 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 4 | 4 | B.1.1 | 0.000073 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 4 | 4 | B.1.1.7 | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 3 | 4 | B.1.2 | 0.000026 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atA | 1 | 4 | B.1.2 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 4 | 4 | P.2 | 0.000747 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 3 | 3 | AY.12 | 0.000948 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 3 | 3 | AY.25 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 3 | 3 | AY.29 | 0.000047 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 3 | 3 | AY.3 | 0.00003 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 3 | 3 | B.1.1.448 | 0.006098 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 3 | 3 | B.1.1.464 | 0.004418 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 3 | 3 | B.1.1.7 | 0.000003 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 3 | 3 | B.1.177 | 0.00004 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 3 | 3 | B.1.177 | 0.00004 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 3 | 3 | B.1.240 | 0.000647 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 3 | 3 | B.1.351 | 0.000089 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 3 | 3 | P.1.7 | 0.000958 |
| ORF1ab/nsp15A1-B | 327 | I327A | ATt | GCt | 2 | 2 | All | 0 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 2 | 2 | AY.102 | 0.000053 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 2 | 2 | AY.103 | 0.000012 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 2 | 2 | AY.103 | 0.000012 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 2 | 2 | AY.20 | 0.000078 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 2 | 2 | AY.33 | 0.000134 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 2 | 2 | AY.4.2 | 0.000043 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 2 | 2 | AY.43 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | AY.43 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 2 | 2 | AY.44 | 0.000012 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | AY.63 | 0.000774 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 2 | 2 | AY.67 | 0.000929 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | AY.79 | 0.002421 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | AY.98.1 | 0.000097 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 2 | 2 | B.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 2 | 2 | B.1.1 | 0.000036 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 2 | 2 | B.1.1.166 | 0.066667 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 2 | 2 | B.1.1.267 | 0.020202 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | B.1.1.519 | 0.000079 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | B.1.160 | 0.000062 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 2 | 2 | B.1.177 | 0.000026 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 2 | 2 | B.1.177.53 | 0.004785 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 2 | 2 | B.1.2 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 2 | 2 | B.1.2 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | aTt | a-t | 2 | 2 | B.1.2 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 2 | 2 | B.1.258 | 0.000133 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 2 | 2 | B.1.621 | 0.000177 |
| ORF1ab/nsp15A1-B | 327 | I327A | ATt | GCt | 2 | 2 | P.1.12 | 0.000968 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 2 | 2 | P.1.4 | 0.001953 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | A | 0.000387 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | A.2.5 | 0.000499 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AD.2 | 0.000219 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.1 | 0.000396 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.100 | 0.000046 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.102 | 0.000027 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.102 | 0.000027 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | AY.110 | 0.000113 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.111 | 0.000183 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | AY.113 | 0.000142 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | AY.116.1 | 0.000311 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.16 | 0.00038 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.16 | 0.00038 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | AY.25 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.25 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.26 | 0.000028 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.26 | 0.000028 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.27 | 0.000065 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 1 | 1 | AY.27 | 0.000065 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | Att | -tt | 1 | 1 | AY.3 | 0.00001 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 1 | 1 | AY.3 | 0.00001 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | AY.33 | 0.000067 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 1 | 1 | AY.35 | 0.000233 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.36 | 0.000148 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.38 | 0.000499 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.39 | 0.000025 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.39 | 0.000025 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | aTt | a-t | 1 | 1 | AY.4 | 0.000002 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 1 | 1 | AY.4.5 | 0.000107 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | AY.4.5 | 0.000107 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 1 | 1 | AY.42 | 0.00004 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.42 | 0.00004 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.43 | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | AtT | -tG | 1 | 1 | AY.43 | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.44 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 1 | 1 | AY.44 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.44 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.44 | 0.000006 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.46 | 0.000104 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.46.2 | 0.000635 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.46.4 | 0.000165 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 1 | 1 | AY.46.6 | 0.000072 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | AY.46.6 | 0.000072 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.47 | 0.000031 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | AY.61 | 0.000105 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | Att | -tt | 1 | 1 | AY.67 | 0.000464 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.74 | 0.000116 |
| ORF1ab/nsp15A1-B | 327 | I327M | atT | atG | 1 | 1 | AY.75 | 0.000056 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | AY.84 | 0.000437 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | AY.86 | 0.00083 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atA | 1 | 1 | AY.9.2 | 0.000037 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.9.2 | 0.000037 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | AY.9.2 | 0.000037 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | AY.99 | 0.001049 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | AY.99 | 0.001049 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | AY.99.1 | 0.001553 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | B | 0.000128 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.1.214 | 0.000055 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | B.1.1.225 | 0.007194 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | B.1.1.25 | 0.000569 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.1.28 | 0.000311 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.1.284 | 0.000107 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.1.311 | 0.000358 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.1.348 | 0.000796 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | B.1.1.445 | 0.037037 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.1.47 | 0.005348 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | B.1.1.50 | 0.000679 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.1.54 | 0.003021 |
| ORF1ab/nsp15A1-B | 327 | I327F | Att | Ttt | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | aTt | a-t | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.1.70 | 0.000341 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.1.99 | 0.02381 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.110.3 | 0.000718 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | B.1.177 | 0.000013 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.177 | 0.000013 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.177.63 | 0.002703 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
| ORF1ab/nsp15A1-B | 327 | I327F | Att | Ttt | 1 | 1 | B.1.2 | 0.000009 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.214.2 | 0.0006 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 1 | 1 | B.1.221.1 | 0.002907 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.23 | 0.006061 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.239 | 0.001221 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.243 | 0.00007 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.258 | 0.000067 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.302 | 0.013333 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.36.8 | 0.001 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.36.9 | 0.003215 |
| ORF1ab/nsp15A1-B | 327 | I327F | Att | Ttt | 1 | 1 | B.1.361 | 0.001289 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.367 | 0.000792 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.375 | 0.00082 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.397 | 0.004854 |
| ORF1ab/nsp15A1-B | 327 | I327F | Att | Ttt | 1 | 1 | B.1.429 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.429 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | B.1.429 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | B.1.497 | 0.000315 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.525 | 0.000113 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | B.1.526 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.526 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | B.1.526 | 0.000024 |
| ORF1ab/nsp15A1-B | 327 | I327L | Att | Ctt | 1 | 1 | B.1.551 | 0.00129 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | B.1.596 | 0.000087 |
| ORF1ab/nsp15A1-B | 327 | I327del1 | AtT | -tW | 1 | 1 | B.1.617.2 | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327S | aTt | aGt | 1 | 1 | B.1.617.2 | 0.000004 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.1.620 | 0.000946 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | B.61 | 0.005747 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | C.36.3 | 0.000567 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | C.36.3 | 0.000567 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | D.2 | 0.000075 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | D.2 | 0.000075 |
| ORF1ab/nsp15A1-B | 327 | I327N | aTt | aAt | 1 | 1 | D.2 | 0.000075 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | P.1 | 0.000016 |
| ORF1ab/nsp15A1-B | 327 | I327I | atT | atC | 1 | 1 | P.1 | 0.000016 |
| ORF1ab/nsp15A1-B | 327 | I327V | Att | Gtt | 1 | 1 | P.1.12 | 0.000484 |
| ORF1ab/nsp15A1-B | 327 | I327T | aTt | aCt | 1 | 1 | P.1.14 | 0.000048 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | P.1.15 | 0.000232 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | P.1.7 | 0.000319 |
| ORF1ab/nsp15A1-B | 327 | I327del | ATT | --- | 1 | 1 | Q.8 | 0.000165 |
 |
 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|