CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 320 | V320L | V6772L | nonsyn | Gtg | Ttg | 9435 | 9403 | 0.996608 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320L | V6772L | nonsyn | Gtg | Ctg | 9435 | 31 | 0.00328564 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320L | V6772L | nonsyn | GtG | CtT | 9435 | 1 | 0.000105988 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320M | V6772M | nonsyn | Gtg | Atg | 7181 | 7181 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320V | V6772V | syn | gtG | gtT | 4062 | 3474 | 0.855244 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320V | V6772V | syn | gtG | gtA | 4062 | 494 | 0.121615 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320V | V6772V | syn | gtG | gtC | 4062 | 94 | 0.0231413 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320del | V6772del | del | GTG | --- | 78 | 78 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320A | V6772A | nonsyn | gTg | gCg | 29 | 28 | 0.965517 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320A | V6772A | nonsyn | gTG | gCC | 29 | 1 | 0.0344828 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320E | V6772E | nonsyn | gTg | gAg | 11 | 10 | 0.909091 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320E | V6772E | nonsyn | gTG | gAA | 11 | 1 | 0.0909091 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320del1 | V6772del1 | del | Gtg | -tg | 6 | 3 | 0.5 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320del1 | V6772del1 | del | gtG | gt- | 6 | 1 | 0.166667 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320del1 | V6772del1 | del | gTg | g-g | 6 | 1 | 0.166667 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320del1 | V6772del1 | del | GTg | -Ag | 6 | 1 | 0.166667 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320G | V6772G | nonsyn | gTg | gGg | 3 | 3 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320del2 | V6772del2 | del | gTG | g-- | 2 | 2 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320D | V6772D | nonsyn | gTG | gAT | 1 | 1 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320I | V6772I | nonsyn | GtG | AtT | 1 | 1 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320S | V6772S | nonsyn | GTg | TCg | 1 | 1 | 1 | 20578-20580 |
ORF1ab/nsp15A1-B | 320 | V320W | V6772W | nonsyn | GTg | TGg | 1 | 1 | 1 | 20578-20580 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 9403 | 9435 | All | 0.001798 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 31 | 9435 | All | 0.000006 |
ORF1ab/nsp15A1-B | 320 | V320L | GtG | CtT | 1 | 9435 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 7181 | 7181 | All | 0.001373 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3474 | 4062 | All | 0.000664 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 494 | 4062 | All | 0.000094 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 94 | 4062 | All | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3749 | 3751 | B.1.1.7 | 0.003356 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 2 | 3751 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 3168 | 3168 | B.1.1.318 | 0.955944 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1156 | 1156 | AZ.2 | 0.949097 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1143 | 1143 | AZ.1 | 0.991327 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 474 | 939 | AY.4 | 0.000738 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 431 | 939 | AY.4 | 0.000671 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 34 | 939 | AY.4 | 0.000053 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 677 | 682 | AY.4 | 0.001054 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 5 | 682 | AY.4 | 0.000008 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 644 | 644 | AZ.3 | 0.978723 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 412 | 412 | B.1.13 | 0.978622 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 393 | 396 | B.1.617.2 | 0.00148 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 3 | 396 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 357 | 375 | B.1.1.7 | 0.00032 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 10 | 375 | B.1.1.7 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 8 | 375 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 322 | 322 | AY.43 | 0.001427 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 297 | 297 | AZ.4 | 0.996644 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 284 | 284 | B.1.466.2 | 0.111111 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 283 | 283 | AZ.5 | 0.992982 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 229 | 229 | AY.120.1 | 0.073515 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 227 | 227 | B.1.1 | 0.004118 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 200 | 200 | AY.103 | 0.001242 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 178 | 187 | AY.43 | 0.000789 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 9 | 187 | AY.43 | 0.00004 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 177 | 181 | B.1.1 | 0.003211 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 4 | 181 | B.1.1 | 0.000073 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 160 | 160 | B.1.1.227 | 0.695652 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 159 | 159 | AY.42 | 0.006397 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 155 | 155 | AY.109 | 0.114645 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 155 | 155 | B.1.2 | 0.001365 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 151 | 151 | AY.3 | 0.001502 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 137 | 144 | AY.5 | 0.002829 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 6 | 144 | AY.5 | 0.000124 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 144 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 144 | 144 | AY.83 | 0.248276 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 132 | 136 | B.1 | 0.001209 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 2 | 136 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 2 | 136 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 132 | 132 | B.1.351 | 0.003924 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 123 | 123 | AZ.2.1 | 1 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 122 | 122 | AY.26 | 0.003454 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 121 | 121 | AY.44 | 0.000736 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 117 | 120 | B.1.2 | 0.00103 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 2 | 120 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 120 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 119 | 119 | AZ.6 | 1 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 94 | 116 | AY.3 | 0.000935 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 22 | 116 | AY.3 | 0.000219 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 116 | 116 | B.1.526 | 0.002727 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 107 | 108 | B.1.617.2 | 0.000403 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 108 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 105 | 107 | AY.25 | 0.000632 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 2 | 107 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 102 | 102 | B.1.338 | 0.87931 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 98 | 99 | B.1 | 0.000898 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 99 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 91 | 91 | B.1.1.7 | 0.000081 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 89 | 89 | P.1 | 0.001402 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 78 | 78 | All | 0.000015 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 71 | 72 | AY.25 | 0.000427 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 72 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 65 | 65 | B.1.160 | 0.002027 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 64 | 64 | AY.103 | 0.000397 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 64 | 64 | AY.39 | 0.001582 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 62 | 63 | AY.9.2 | 0.002277 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 63 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 61 | 63 | B.1.1.306 | 0.026743 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 2 | 63 | B.1.1.306 | 0.000877 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 61 | 62 | P.1 | 0.000961 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 62 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 60 | 60 | B.1.595 | 0.015658 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 58 | 58 | B.1.1.338 | 1 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 53 | 55 | AY.44 | 0.000323 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 2 | 55 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 50 | 50 | B.1.351 | 0.001486 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 48 | 48 | B.1.1.519 | 0.001906 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 46 | 47 | AY.20 | 0.001788 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 47 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 43 | 45 | B.1.429 | 0.001012 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 2 | 45 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 44 | 44 | AY.4.2 | 0.000954 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 43 | 43 | AY.102 | 0.00114 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 41 | 41 | AY.26 | 0.001161 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 39 | 39 | AY.108 | 0.042999 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 37 | 37 | AY.4.5 | 0.003977 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 29 | 36 | AY.5 | 0.000599 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 7 | 36 | AY.5 | 0.000145 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 36 | 36 | B.1.1 | 0.000653 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 35 | 35 | B.1.221 | 0.002486 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 33 | 33 | B.1.234 | 0.004354 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 32 | 32 | AY.4.2.1 | 0.004768 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 32 | 32 | AY.98 | 0.002528 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 28 | 29 | All | 0.000005 |
ORF1ab/nsp15A1-B | 320 | V320A | gTG | gCC | 1 | 29 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 29 | 29 | AY.27 | 0.001877 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 29 | 29 | B.1.160 | 0.000904 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 27 | 28 | AY.102 | 0.000716 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 28 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 26 | 26 | B.1.621 | 0.002301 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 24 | 24 | AY.100 | 0.001104 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 23 | 23 | AY.46.5 | 0.004563 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 23 | 23 | B.1.221 | 0.001634 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 16 | 22 | AY.42 | 0.000644 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 22 | AY.42 | 0.000241 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 22 | 22 | AY.98.1 | 0.001065 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 21 | 21 | AY.34 | 0.002036 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 20 | 20 | B.1.1.519 | 0.000794 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 20 | 20 | B.1.36 | 0.002918 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 19 | 19 | AY.120 | 0.000706 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 19 | 19 | AY.67 | 0.008821 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 18 | 18 | AY.117 | 0.001521 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 17 | 18 | AY.39 | 0.00042 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 18 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 17 | 18 | B.1.621 | 0.001505 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 18 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 16 | 16 | B.1.1.50 | 0.010862 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 16 | 16 | B.1.240 | 0.003449 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 16 | 16 | P.1.7 | 0.005109 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 14 | 14 | A.24 | 1 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 14 | 14 | B.1.1.37 | 0.0027 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 13 | 13 | AY.75.1 | 0.002344 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 12 | 13 | C.37 | 0.001393 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 13 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 13 | 13 | P.1.4 | 0.012695 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 12 | 12 | B.1.177.16 | 0.007973 |
ORF1ab/nsp15A1-B | 320 | V320E | gTg | gAg | 10 | 11 | All | 0.000002 |
ORF1ab/nsp15A1-B | 320 | V320E | gTG | gAA | 1 | 11 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 11 | 11 | B.1.1.420 | 0.011066 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 11 | 11 | B.1.177.46 | 0.010101 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 9 | 10 | AY.34 | 0.000873 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 10 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 10 | 10 | B.1.1.419 | 0.074074 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 10 | 10 | L.1 | 0.019048 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 9 | 9 | B.1.1.192 | 0.020785 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 8 | 8 | B.1.1.326 | 0.014085 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 6 | 7 | AY.46.6 | 0.000433 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 7 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 7 | 7 | B.1.1.50 | 0.004752 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 6 | 7 | B.1.525 | 0.000679 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 7 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 7 | 7 | B.1.618 | 0.028226 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 7 | 7 | N.3 | 0.040698 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 6 | AE.8 | 0.002934 |
ORF1ab/nsp15A1-B | 320 | V320del1 | Gtg | -tg | 3 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 320 | V320del1 | gtG | gt- | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320del1 | GTg | -Ag | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320del1 | gTg | g-g | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 6 | 6 | AY.38 | 0.002996 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 6 | AY.69 | 0.000933 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 6 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 6 | AY.75.1 | 0.000902 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 6 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 6 | 6 | B.1.206 | 0.004894 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 6 | B.1.538 | 0.048387 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 6 | C.36.3 | 0.002269 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 2 | 6 | C.36.3 | 0.001134 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 6 | 6 | P.1.16 | 0.002245 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 5 | A.1 | 0.001127 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 5 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 5 | AY.119 | 0.000141 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 5 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | AY.4.3 | 0.004209 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | B.1.177.23 | 0.016181 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | B.1.258.3 | 0.008375 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | B.1.377 | 0.022831 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 5 | 5 | C.1 | 0.011962 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | AY.120.2 | 0.005141 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 4 | AY.46 | 0.000312 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 4 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | B.1.1.341 | 0.235294 |
ORF1ab/nsp15A1-B | 320 | V320E | gTg | gAg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | B.1.147 | 0.003023 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | B.1.177.69 | 0.005935 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | B.1.391 | 0.00451 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | B.1.564.1 | 0.006309 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | D.5 | 0.0199 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp15A1-B | 320 | V320G | gTg | gGg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.23.1 | 0.001252 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 320 | V320E | gTg | gAg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.81 | 0.005976 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | B.1.1.351 | 0.00838 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 3 | B.1.637 | 0.000146 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtC | 1 | 3 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | A | 0.000774 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp15A1-B | 320 | V320del2 | gTG | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 2 | 2 | B.1.1.166 | 0.066667 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.1.209 | 0.017857 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.1.27 | 0.011299 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.177.68 | 0.030303 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.391 | 0.002255 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.428.2 | 0.066667 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.536 | 0.047619 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 320 | V320del1 | Gtg | -tg | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AK.2 | 0.045455 |
ORF1ab/nsp15A1-B | 320 | V320D | gTG | gAT | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320W | GTg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320S | GTg | TCg | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320I | GtG | AtT | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 320 | V320A | gTG | gCC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp15A1-B | 320 | V320del1 | gtG | gt- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 320 | V320E | gTG | gAA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 320 | V320del2 | gTG | g-- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 320 | V320del1 | Gtg | -tg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320E | gTg | gAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp15A1-B | 320 | V320I | GtG | AtT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.446 | 0.076923 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp15A1-B | 320 | V320S | GTg | TCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp15A1-B | 320 | V320E | gTg | gAg | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.166 | 0.008475 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp15A1-B | 320 | V320G | gTg | gGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp15A1-B | 320 | V320del1 | GTg | -Ag | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.245 | 0.03125 |
ORF1ab/nsp15A1-B | 320 | V320W | GTg | TGg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 320 | V320G | gTg | gGg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp15A1-B | 320 | V320del1 | gTg | g-g | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp15A1-B | 320 | V320L | GtG | CtT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 320 | V320E | gTg | gAg | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtA | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp15A1-B | 320 | V320D | gTG | gAT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 320 | V320G | gTg | gGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ctg | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp15A1-B | 320 | V320del2 | gTG | g-- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | C.28 | 0.04 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 320 | V320A | gTg | gCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 320 | V320V | gtG | gtT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 320 | V320M | Gtg | Atg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp15A1-B | 320 | V320L | Gtg | Ttg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp15A1-B | 320 | V320del | GTG | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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