CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 313

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B313V313VV6765VsyngtAgtG3563200.89887620557-20559
ORF1ab/nsp15A1-B313V313VV6765VsyngtAgtT356190.053370820557-20559
ORF1ab/nsp15A1-B313V313VV6765VsyngtAgtC356170.047752820557-20559
ORF1ab/nsp15A1-B313V313LV6765LnonsynGtaTta2672530.94756620557-20559
ORF1ab/nsp15A1-B313V313LV6765LnonsynGtaCta267140.052434520557-20559
ORF1ab/nsp15A1-B313V313IV6765InonsynGtaAta9696120557-20559
ORF1ab/nsp15A1-B313V313delV6765deldelGTA---4747120557-20559
ORF1ab/nsp15A1-B313V313AV6765AnonsyngTagCa2626120557-20559
ORF1ab/nsp15A1-B313V313GV6765GnonsyngTagGa88120557-20559
ORF1ab/nsp15A1-B313V313del1V6765del1delgtAgt-650.83333320557-20559
ORF1ab/nsp15A1-B313V313del1V6765del1delGta-ta610.16666720557-20559
ORF1ab/nsp15A1-B313V313del2V6765del2delGTa--a320.66666720557-20559
ORF1ab/nsp15A1-B313V313del2V6765del2delgTAg--310.33333320557-20559
ORF1ab/nsp15A1-B313V313EV6765EnonsyngTagAa22120557-20559
ORF1ab/nsp15A1-B313V313SV6765SnonsynGTATCT11120557-20559
ORF1ab/nsp15A1-B313V313WV6765WnonsynGTATGG11120557-20559

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B313V313VgtAgtG320356All0.000061
ORF1ab/nsp15A1-B313V313VgtAgtT19356All0.000004
ORF1ab/nsp15A1-B313V313VgtAgtC17356All0.000003
ORF1ab/nsp15A1-B313V313LGtaTta253267All0.000048
ORF1ab/nsp15A1-B313V313LGtaCta14267All0.000003
ORF1ab/nsp15A1-B313V313LGtaTta153153AY.430.000678
ORF1ab/nsp15A1-B313V313IGtaAta9696All0.000018
ORF1ab/nsp15A1-B313V313VgtAgtG5960AY.40.000092
ORF1ab/nsp15A1-B313V313VgtAgtT160AY.40.000002
ORF1ab/nsp15A1-B313V313VgtAgtG5757B.1.36.230.934426
ORF1ab/nsp15A1-B313V313delGTA---4747All0.000009
ORF1ab/nsp15A1-B313V313VgtAgtG3536AY.430.000155
ORF1ab/nsp15A1-B313V313VgtAgtT136AY.430.000004
ORF1ab/nsp15A1-B313V313VgtAgtG1731B.1.1.70.000015
ORF1ab/nsp15A1-B313V313VgtAgtT931B.1.1.70.000008
ORF1ab/nsp15A1-B313V313VgtAgtC531B.1.1.70.000004
ORF1ab/nsp15A1-B313V313AgTagCa2626All0.000005
ORF1ab/nsp15A1-B313V313LGtaTta2424AY.440.000146
ORF1ab/nsp15A1-B313V313IGtaAta1919B.1.1.70.000017
ORF1ab/nsp15A1-B313V313VgtAgtG1818B.1.617.20.000068
ORF1ab/nsp15A1-B313V313LGtaTta1515AY.250.00009
ORF1ab/nsp15A1-B313V313AgTagCa1414AY.40.000022
ORF1ab/nsp15A1-B313V313delGTA---1414B.1.1.70.000013
ORF1ab/nsp15A1-B313V313LGtaCta814B.1.1.70.000007
ORF1ab/nsp15A1-B313V313LGtaTta614B.1.1.70.000005
ORF1ab/nsp15A1-B313V313VgtAgtG1313AY.870.010824
ORF1ab/nsp15A1-B313V313VgtAgtG1212AY.30.000119
ORF1ab/nsp15A1-B313V313IGtaAta1212B.1.1770.000158
ORF1ab/nsp15A1-B313V313LGtaTta911B.1.617.20.000034
ORF1ab/nsp15A1-B313V313LGtaCta211B.1.617.20.000008
ORF1ab/nsp15A1-B313V313IGtaAta1010AY.40.000016
ORF1ab/nsp15A1-B313V313LGtaTta1010B.1.1770.000132
ORF1ab/nsp15A1-B313V313VgtAgtC610P.10.000095
ORF1ab/nsp15A1-B313V313VgtAgtG410P.10.000063
ORF1ab/nsp15A1-B313V313GgTagGa88All0.000002
ORF1ab/nsp15A1-B313V313GgTagGa88AY.40.000012
ORF1ab/nsp15A1-B313V313LGtaTta48B.1.5250.000453
ORF1ab/nsp15A1-B313V313LGtaCta48B.1.5250.000453
ORF1ab/nsp15A1-B313V313LGtaTta77AY.40.000011
ORF1ab/nsp15A1-B313V313VgtAgtG77AY.440.000043
ORF1ab/nsp15A1-B313V313VgtAgtG77B.1.5260.000165
ORF1ab/nsp15A1-B313V313delGTA---660.333333
ORF1ab/nsp15A1-B313V313del1gtAgt-56All0.000001
ORF1ab/nsp15A1-B313V313del1Gta-ta16All0
ORF1ab/nsp15A1-B313V313VgtAgtG66AY.1030.000037
ORF1ab/nsp15A1-B313V313VgtAgtG55AY.540.000477
ORF1ab/nsp15A1-B313V313VgtAgtC35B.1.20.000026
ORF1ab/nsp15A1-B313V313VgtAgtG25B.1.20.000018
ORF1ab/nsp15A1-B313V313IGtaAta55B.1.617.20.000019
ORF1ab/nsp15A1-B313V313VgtAgtG44AY.1020.000106
ORF1ab/nsp15A1-B313V313IGtaAta44AY.1030.000025
ORF1ab/nsp15A1-B313V313VgtAgtG44AY.1200.000149
ORF1ab/nsp15A1-B313V313IGtaAta44AY.250.000024
ORF1ab/nsp15A1-B313V313VgtAgtG44AY.4.20.000087
ORF1ab/nsp15A1-B313V313VgtAgtG44B.10.000037
ORF1ab/nsp15A1-B313V313VgtAgtG44B.1.1.3330.004306
ORF1ab/nsp15A1-B313V313VgtAgtG44B.1.5090.003463
ORF1ab/nsp15A1-B313V313VgtAgtG44B.1.617.10.000516
ORF1ab/nsp15A1-B313V313del2GTa--a23All0
ORF1ab/nsp15A1-B313V313del2gTAg--13All0
ORF1ab/nsp15A1-B313V313VgtAgtG33AY.320.001597
ORF1ab/nsp15A1-B313V313VgtAgtG33AY.390.000074
ORF1ab/nsp15A1-B313V313VgtAgtG33AY.610.000314
ORF1ab/nsp15A1-B313V313IGtaAta33B.1.10.000054
ORF1ab/nsp15A1-B313V313AgTagCa33B.1.1.70.000003
ORF1ab/nsp15A1-B313V313IGtaAta33B.1.177.520.005272
ORF1ab/nsp15A1-B313V313VgtAgtG23B.1.360.000292
ORF1ab/nsp15A1-B313V313VgtAgtT13B.1.360.000146
ORF1ab/nsp15A1-B313V313IGtaAta33B.6.30.078947
ORF1ab/nsp15A1-B313V313VgtAgtG33D.20.000225
ORF1ab/nsp15A1-B313V313LGtaTta33D.20.000225
ORF1ab/nsp15A1-B313V313del1gtAgt-220.111111
ORF1ab/nsp15A1-B313V313EgTagAa22All0
ORF1ab/nsp15A1-B313V313IGtaAta22AY.1060.00067
ORF1ab/nsp15A1-B313V313VgtAgtG22AY.240.000862
ORF1ab/nsp15A1-B313V313VgtAgtT12AY.330.000067
ORF1ab/nsp15A1-B313V313VgtAgtG12AY.330.000067
ORF1ab/nsp15A1-B313V313delGTA---22AY.40.000003
ORF1ab/nsp15A1-B313V313IGtaAta22AY.4.20.000043
ORF1ab/nsp15A1-B313V313VgtAgtG22AY.450.000243
ORF1ab/nsp15A1-B313V313LGtaTta22AY.470.000062
ORF1ab/nsp15A1-B313V313VgtAgtG22AY.99.20.000184
ORF1ab/nsp15A1-B313V313LGtaTta22B.1.10.000036
ORF1ab/nsp15A1-B313V313VgtAgtC22B.1.1.260.010471
ORF1ab/nsp15A1-B313V313VgtAgtG22B.1.1.3060.000877
ORF1ab/nsp15A1-B313V313VgtAgtT12B.1.1.5190.00004
ORF1ab/nsp15A1-B313V313VgtAgtG12B.1.1.5190.00004
ORF1ab/nsp15A1-B313V313del2GTa--a12B.1.1.70.000001
ORF1ab/nsp15A1-B313V313del2gTAg--12B.1.1.70.000001
ORF1ab/nsp15A1-B313V313delGTA---22B.1.1.700.000682
ORF1ab/nsp15A1-B313V313delGTA---22B.1.20.000018
ORF1ab/nsp15A1-B313V313IGtaAta22B.1.20.000018
ORF1ab/nsp15A1-B313V313delGTA---22B.1.2580.000133
ORF1ab/nsp15A1-B313V313VgtAgtG22B.1.4290.000047
ORF1ab/nsp15A1-B313V313VgtAgtG22B.1.5680.002222
ORF1ab/nsp15A1-B313V313VgtAgtG22B.1.6280.000705
ORF1ab/nsp15A1-B313V313IGtaAta22P.20.000373
ORF1ab/nsp15A1-B313V313LGtaTta11A0.000387
ORF1ab/nsp15A1-B313V313delGTA---11A0.000387
ORF1ab/nsp15A1-B313V313LGtaTta11A.20.000662
ORF1ab/nsp15A1-B313V313VgtAgtT11A.2.40.003367
ORF1ab/nsp15A1-B313V313SGTATCT11All0
ORF1ab/nsp15A1-B313V313WGTATGG11All0
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.1000.000046
ORF1ab/nsp15A1-B313V313IGtaAta11AY.1000.000046
ORF1ab/nsp15A1-B313V313delGTA---11AY.1030.000006
ORF1ab/nsp15A1-B313V313IGtaAta11AY.1130.000142
ORF1ab/nsp15A1-B313V313IGtaAta11AY.1170.000085
ORF1ab/nsp15A1-B313V313IGtaAta11AY.1200.000037
ORF1ab/nsp15A1-B313V313IGtaAta11AY.1210.000135
ORF1ab/nsp15A1-B313V313IGtaAta11AY.130.000161
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.20.000356
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.230.00007
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.250.000006
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.260.000028
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.290.000016
ORF1ab/nsp15A1-B313V313LGtaTta11AY.290.000016
ORF1ab/nsp15A1-B313V313delGTA---11AY.30.00001
ORF1ab/nsp15A1-B313V313AgTagCa11AY.30.00001
ORF1ab/nsp15A1-B313V313del1gtAgt-11AY.30.00001
ORF1ab/nsp15A1-B313V313LGtaTta11AY.3.10.000085
ORF1ab/nsp15A1-B313V313IGtaAta11AY.3.10.000085
ORF1ab/nsp15A1-B313V313VgtAgtT11AY.300.000396
ORF1ab/nsp15A1-B313V313delGTA---11AY.360.000148
ORF1ab/nsp15A1-B313V313IGtaAta11AY.380.000499
ORF1ab/nsp15A1-B313V313LGtaTta11AY.390.000025
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.39.10.00004
ORF1ab/nsp15A1-B313V313EgTagAa11AY.40.000002
ORF1ab/nsp15A1-B313V313del2GTa--a11AY.4.50.000107
ORF1ab/nsp15A1-B313V313del1Gta-ta11AY.4.50.000107
ORF1ab/nsp15A1-B313V313IGtaAta11AY.430.000004
ORF1ab/nsp15A1-B313V313delGTA---11AY.440.000006
ORF1ab/nsp15A1-B313V313AgTagCa11AY.440.000006
ORF1ab/nsp15A1-B313V313IGtaAta11AY.460.000104
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.46.60.000072
ORF1ab/nsp15A1-B313V313VgtAgtT11AY.480.000465
ORF1ab/nsp15A1-B313V313IGtaAta11AY.50.000021
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.50.000021
ORF1ab/nsp15A1-B313V313IGtaAta11AY.530.000288
ORF1ab/nsp15A1-B313V313IGtaAta11AY.710.000475
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.840.000437
ORF1ab/nsp15A1-B313V313LGtaTta11AY.870.000833
ORF1ab/nsp15A1-B313V313AgTagCa11AY.90.000068
ORF1ab/nsp15A1-B313V313IGtaAta11AY.940.000443
ORF1ab/nsp15A1-B313V313VgtAgtG11AY.980.000079
ORF1ab/nsp15A1-B313V313IGtaAta11AY.98.10.000048
ORF1ab/nsp15A1-B313V313LGtaTta11B.10.000009
ORF1ab/nsp15A1-B313V313AgTagCa11B.10.000009
ORF1ab/nsp15A1-B313V313delGTA---11B.1.1.1590.004673
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.1.2220.000204
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.1.250.000569
ORF1ab/nsp15A1-B313V313delGTA---11B.1.1.3110.000358
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.1.4500.034483
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.1.5190.00004
ORF1ab/nsp15A1-B313V313AgTagCa11B.1.1.5190.00004
ORF1ab/nsp15A1-B313V313del1gtAgt-11B.1.1.70.000001
ORF1ab/nsp15A1-B313V313WGTATGG11B.1.1.70.000001
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.110.30.000718
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.110.30.000718
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.1110.001175
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.1600.000031
ORF1ab/nsp15A1-B313V313AgTagCa11B.1.1600.000031
ORF1ab/nsp15A1-B313V313delGTA---11B.1.160.70.002079
ORF1ab/nsp15A1-B313V313delGTA---11B.1.1770.000013
ORF1ab/nsp15A1-B313V313AgTagCa11B.1.1770.000013
ORF1ab/nsp15A1-B313V313delGTA---11B.1.177.180.00116
ORF1ab/nsp15A1-B313V313VgtAgtT11B.1.177.40.000211
ORF1ab/nsp15A1-B313V313delGTA---11B.1.177.690.001484
ORF1ab/nsp15A1-B313V313delGTA---11B.1.177.830.001481
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.177.860.000183
ORF1ab/nsp15A1-B313V313AgTagCa11B.1.20.000009
ORF1ab/nsp15A1-B313V313EgTagAa11B.1.20.000009
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.2210.000071
ORF1ab/nsp15A1-B313V313delGTA---11B.1.230.006061
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.2400.000216
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.258.170.000104
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.3200.001245
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.3510.00003
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.3510.00003
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.36.390.002217
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.36.390.002217
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.3690.000285
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.4000.000429
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.4290.000024
ORF1ab/nsp15A1-B313V313VgtAgtT11B.1.4620.007246
ORF1ab/nsp15A1-B313V313VgtAgtC11B.1.4970.000315
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.5250.000113
ORF1ab/nsp15A1-B313V313delGTA---11B.1.5260.000024
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.5510.00129
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.5820.000491
ORF1ab/nsp15A1-B313V313VgtAgtG11B.1.5960.000087
ORF1ab/nsp15A1-B313V313del1gtAgt-11B.1.5960.000087
ORF1ab/nsp15A1-B313V313IGtaAta11B.1.5960.000087
ORF1ab/nsp15A1-B313V313AgTagCa11B.1.5960.000087
ORF1ab/nsp15A1-B313V313delGTA---11B.1.617.20.000004
ORF1ab/nsp15A1-B313V313SGTATCT11B.1.617.20.000004
ORF1ab/nsp15A1-B313V313delGTA---11B.1.6200.000946
ORF1ab/nsp15A1-B313V313LGtaTta11B.1.6370.000073
ORF1ab/nsp15A1-B313V313IGtaAta11P.10.000016
ORF1ab/nsp15A1-B313V313LGtaTta11P.1.130.000898
ORF1ab/nsp15A1-B313V313delGTA---11P.1.150.000232
ORF1ab/nsp15A1-B313V313IGtaAta11P.1.170.000162
ORF1ab/nsp15A1-B313V313delGTA---11P.1.70.000319
ORF1ab/nsp15A1-B313V313delGTA---11Q.80.000165
ORF1ab/nsp15A1-B313V313VgtAgtG11R.10.00009