CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 312 | S312F | S6764F | nonsyn | tCt | tTt | 3076 | 3076 | 1 | 20554-20556 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3076 | 3076 | All | 0.000588 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 349 | 349 | AY.4 | 0.000543 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 276 | 276 | AY.44 | 0.00168 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 256 | 256 | AY.25 | 0.00154 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 207 | 207 | B.1.617.2 | 0.000779 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 200 | 200 | B.1.1.7 | 0.000179 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 186 | 186 | AY.9.2 | 0.006832 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 158 | 158 | AY.103 | 0.000981 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 124 | 124 | AY.9.1 | 0.010382 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 109 | 109 | AY.120 | 0.004052 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 100 | 100 | AY.102 | 0.002651 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 85 | 85 | AY.43 | 0.000377 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 76 | 76 | B.1 | 0.000696 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 67 | 67 | B.1.36.24 | 0.41358 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 60 | 60 | AY.117 | 0.005071 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 60 | 60 | AY.46.6 | 0.004332 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 42 | 42 | AY.39 | 0.001038 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 35 | 35 | B.1.1 | 0.000635 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 34 | 34 | AY.29 | 0.000536 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 34 | 34 | AY.3 | 0.000338 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 33 | 33 | B.1.287 | 1 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 24 | 24 | AY.75 | 0.001345 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 24 | 24 | B.1.36.29 | 0.012416 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 18 | 18 | AY.23 | 0.001255 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 17 | 17 | B.1.1.519 | 0.000675 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 16 | 16 | AY.54 | 0.001526 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 14 | 14 | AY.99.2 | 0.00129 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 12 | 12 | AY.85 | 0.005126 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 11 | 11 | AY.113 | 0.001566 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 11 | 11 | B.1.240 | 0.002371 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 8 | 8 | AZ.1 | 0.006938 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 7 | 7 | A.2.5 | 0.003493 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 7 | 7 | B.1.280 | 0.05 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 6 | 6 | B.1.1.294 | 0.007595 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 5 | 5 | B.1.1.432 | 0.006329 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | B.1.1.312 | 0.007648 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.1.299 | 0.036585 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.160.18 | 0.021898 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.1.164 | 0.010309 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.1.431 | 0.032258 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.117 | 0.0125 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.379 | 0.017241 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.27 | 0.015385 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 312 | S312F | tCt | tTt | 1 | 1 | P.6 | 0.003145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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