CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 310

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B310D310DD6762DsyngaTgaC267267120548-20550
ORF1ab/nsp15A1-B310D310GD6762GnonsyngAtgGt230230120548-20550
ORF1ab/nsp15A1-B310D310YD6762YnonsynGatTat228228120548-20550
ORF1ab/nsp15A1-B310D310ED6762EnonsyngaTgaG2091660.79425820548-20550
ORF1ab/nsp15A1-B310D310ED6762EnonsyngaTgaA209430.20574220548-20550
ORF1ab/nsp15A1-B310D310ND6762NnonsynGatAat199199120548-20550
ORF1ab/nsp15A1-B310D310delD6762deldelGAT---5454120548-20550
ORF1ab/nsp15A1-B310D310AD6762AnonsyngAtgCt1919120548-20550
ORF1ab/nsp15A1-B310D310VD6762VnonsyngAtgTt15140.93333320548-20550
ORF1ab/nsp15A1-B310D310VD6762VnonsyngATgTG1510.066666720548-20550
ORF1ab/nsp15A1-B310D310HD6762HnonsynGatCat66120548-20550
ORF1ab/nsp15A1-B310D310SD6762SnonsynGAtAGt320.66666720548-20550
ORF1ab/nsp15A1-B310D310SD6762SnonsynGAtTCt310.33333320548-20550
ORF1ab/nsp15A1-B310D310FD6762FnonsynGAtTTt22120548-20550
ORF1ab/nsp15A1-B310D310del1D6762del1delGat-at210.520548-20550
ORF1ab/nsp15A1-B310D310del1D6762del1delgaTga-210.520548-20550
ORF1ab/nsp15A1-B310D310del2D6762del2delgATg--11120548-20550
ORF1ab/nsp15A1-B310D310PD6762PnonsynGAtCCt11120548-20550
ORF1ab/nsp15A1-B310D310ID6762InonsynGAtATt11120548-20550
ORF1ab/nsp15A1-B310D310KD6762KnonsynGaTAaA11120548-20550
ORF1ab/nsp15A1-B310D310CD6762CnonsynGAtTGt11120548-20550

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B310D310DgaTgaC267267All0.000051
ORF1ab/nsp15A1-B310D310GgAtgGt230230All0.000044
ORF1ab/nsp15A1-B310D310YGatTat228228All0.000044
ORF1ab/nsp15A1-B310D310EgaTgaG166209All0.000032
ORF1ab/nsp15A1-B310D310EgaTgaA43209All0.000008
ORF1ab/nsp15A1-B310D310NGatAat199199All0.000038
ORF1ab/nsp15A1-B310D310EgaTgaG99123B.1.1.70.000089
ORF1ab/nsp15A1-B310D310EgaTgaA24123B.1.1.70.000021
ORF1ab/nsp15A1-B310D310DgaTgaC9595B.1.1.70.000085
ORF1ab/nsp15A1-B310D310NGatAat6767B.1.10.001215
ORF1ab/nsp15A1-B310D310YGatTat6363B.1.1.4041
ORF1ab/nsp15A1-B310D310NGatAat6363B.1.1.70.000056
ORF1ab/nsp15A1-B310D310delGAT---5454All0.00001
ORF1ab/nsp15A1-B310D310GgAtgGt3838AY.4.20.000824
ORF1ab/nsp15A1-B310D310YGatTat3636AY.40.000056
ORF1ab/nsp15A1-B310D310GgAtgGt3232AY.40.00005
ORF1ab/nsp15A1-B310D310DgaTgaC3131B.1.177.40.006543
ORF1ab/nsp15A1-B310D310EgaTgaG3030B.1.177.40.006332
ORF1ab/nsp15A1-B310D310GgAtgGt2828B.1.1.70.000025
ORF1ab/nsp15A1-B310D310GgAtgGt2626B.1.1.4280.245283
ORF1ab/nsp15A1-B310D310DgaTgaC2121AY.40.000033
ORF1ab/nsp15A1-B310D310DgaTgaC2020AY.430.000089
ORF1ab/nsp15A1-B310D310AgAtgCt1919All0.000004
ORF1ab/nsp15A1-B310D310NGatAat1818AY.40.000028
ORF1ab/nsp15A1-B310D310DgaTgaC1717AY.460.001769
ORF1ab/nsp15A1-B310D310VgAtgTt1415All0.000003
ORF1ab/nsp15A1-B310D310VgATgTG115All0
ORF1ab/nsp15A1-B310D310YGatTat1515B.1.10.000272
ORF1ab/nsp15A1-B310D310delGAT---1414B.1.1.70.000013
ORF1ab/nsp15A1-B310D310GgAtgGt1212A.10.003382
ORF1ab/nsp15A1-B310D310NGatAat1212AY.4.20.00026
ORF1ab/nsp15A1-B310D310EgaTgaG1212B.10.00011
ORF1ab/nsp15A1-B310D310YGatTat1212B.1.1.70.000011
ORF1ab/nsp15A1-B310D310GgAtgGt1212B.1.617.20.000045
ORF1ab/nsp15A1-B310D310DgaTgaC1111P.1.140.000526
ORF1ab/nsp15A1-B310D310AgAtgCt1010AY.40.000016
ORF1ab/nsp15A1-B310D310YGatTat1010B.10.000092
ORF1ab/nsp15A1-B310D310GgAtgGt1010B.1.4290.000235
ORF1ab/nsp15A1-B310D310YGatTat99B.1.5250.001018
ORF1ab/nsp15A1-B310D310delGAT---880.444444
ORF1ab/nsp15A1-B310D310GgAtgGt88AY.430.000035
ORF1ab/nsp15A1-B310D310YGatTat88B.1.617.20.00003
ORF1ab/nsp15A1-B310D310DgaTgaC88P.10.000126
ORF1ab/nsp15A1-B310D310NGatAat77B.1.1.330.002946
ORF1ab/nsp15A1-B310D310EgaTgaA77B.1.617.20.000026
ORF1ab/nsp15A1-B310D310HGatCat66All0.000001
ORF1ab/nsp15A1-B310D310DgaTgaC66AY.1030.000037
ORF1ab/nsp15A1-B310D310GgAtgGt66AY.440.000037
ORF1ab/nsp15A1-B310D310NGatAat66B.10.000055
ORF1ab/nsp15A1-B310D310YGatTat66B.1.177.70.000989
ORF1ab/nsp15A1-B310D310NGatAat66B.1.20.000053
ORF1ab/nsp15A1-B310D310GgAtgGt55AY.1030.000031
ORF1ab/nsp15A1-B310D310EgaTgaG55AY.1060.001674
ORF1ab/nsp15A1-B310D310DgaTgaC55AY.390.000124
ORF1ab/nsp15A1-B310D310YGatTat55AY.430.000022
ORF1ab/nsp15A1-B310D310GgAtgGt55B.1.20.000044
ORF1ab/nsp15A1-B310D310YGatTat55B.1.360.00073
ORF1ab/nsp15A1-B310D310EgaTgaG55P.10.000079
ORF1ab/nsp15A1-B310D310YGatTat44AY.1030.000025
ORF1ab/nsp15A1-B310D310GgAtgGt44AY.1040.007937
ORF1ab/nsp15A1-B310D310GgAtgGt44AY.1130.00057
ORF1ab/nsp15A1-B310D310GgAtgGt44AY.250.000024
ORF1ab/nsp15A1-B310D310HGatCat44AY.40.000006
ORF1ab/nsp15A1-B310D310GgAtgGt44AY.4.50.00043
ORF1ab/nsp15A1-B310D310DgaTgaC44AY.440.000024
ORF1ab/nsp15A1-B310D310YGatTat44AY.50.000083
ORF1ab/nsp15A1-B310D310DgaTgaC44B.1.1770.000053
ORF1ab/nsp15A1-B310D310EgaTgaG44B.1.2340.000528
ORF1ab/nsp15A1-B310D310DgaTgaC44B.1.617.20.000015
ORF1ab/nsp15A1-B310D310SGAtAGt23All0
ORF1ab/nsp15A1-B310D310SGAtTCt13All0
ORF1ab/nsp15A1-B310D310delGAT---33AY.40.000005
ORF1ab/nsp15A1-B310D310YGatTat33AY.610.000314
ORF1ab/nsp15A1-B310D310GgAtgGt33AY.9.20.00011
ORF1ab/nsp15A1-B310D310VgAtgTt23B.10.000018
ORF1ab/nsp15A1-B310D310VgATgTG13B.10.000009
ORF1ab/nsp15A1-B310D310GgAtgGt33B.1.10.000054
ORF1ab/nsp15A1-B310D310YGatTat33B.1.1.1690.054545
ORF1ab/nsp15A1-B310D310VgAtgTt33B.1.1.70.000003
ORF1ab/nsp15A1-B310D310GgAtgGt33B.1.1600.000094
ORF1ab/nsp15A1-B310D310EgaTgaA33B.1.6210.000266
ORF1ab/nsp15A1-B310D310GgAtgGt22A.280.005291
ORF1ab/nsp15A1-B310D310FGAtTTt22All0
ORF1ab/nsp15A1-B310D310del1gaTga-12All0
ORF1ab/nsp15A1-B310D310del1Gat-at12All0
ORF1ab/nsp15A1-B310D310DgaTgaC22AY.1020.000053
ORF1ab/nsp15A1-B310D310GgAtgGt22AY.1020.000053
ORF1ab/nsp15A1-B310D310YGatTat22AY.1020.000053
ORF1ab/nsp15A1-B310D310YGatTat22AY.230.000139
ORF1ab/nsp15A1-B310D310YGatTat22AY.250.000012
ORF1ab/nsp15A1-B310D310DgaTgaC22AY.250.000012
ORF1ab/nsp15A1-B310D310NGatAat22AY.260.000057
ORF1ab/nsp15A1-B310D310YGatTat22AY.30.00002
ORF1ab/nsp15A1-B310D310DgaTgaC22AY.30.00002
ORF1ab/nsp15A1-B310D310NGatAat22AY.30.00002
ORF1ab/nsp15A1-B310D310YGatTat22AY.390.000049
ORF1ab/nsp15A1-B310D310EgaTgaA12AY.40.000002
ORF1ab/nsp15A1-B310D310EgaTgaG12AY.40.000002
ORF1ab/nsp15A1-B310D310delGAT---22AY.4.50.000215
ORF1ab/nsp15A1-B310D310DgaTgaC22AY.4.50.000215
ORF1ab/nsp15A1-B310D310NGatAat22AY.430.000009
ORF1ab/nsp15A1-B310D310SGAtAGt22AY.440.000012
ORF1ab/nsp15A1-B310D310GgAtgGt22AY.450.000243
ORF1ab/nsp15A1-B310D310NGatAat22AY.590.001059
ORF1ab/nsp15A1-B310D310DgaTgaC22AY.7.20.001119
ORF1ab/nsp15A1-B310D310GgAtgGt22AY.750.000112
ORF1ab/nsp15A1-B310D310AgAtgCt22AY.840.000875
ORF1ab/nsp15A1-B310D310GgAtgGt22AY.99.20.000184
ORF1ab/nsp15A1-B310D310EgaTgaA22B.1.10.000036
ORF1ab/nsp15A1-B310D310DgaTgaC22B.1.10.000036
ORF1ab/nsp15A1-B310D310delGAT---22B.1.1.700.000682
ORF1ab/nsp15A1-B310D310YGatTat22B.1.1600.000062
ORF1ab/nsp15A1-B310D310VgAtgTt22B.1.177.120.000303
ORF1ab/nsp15A1-B310D310AgAtgCt22B.1.177.40.000422
ORF1ab/nsp15A1-B310D310YGatTat22B.1.20.000018
ORF1ab/nsp15A1-B310D310delGAT---22B.1.20.000018
ORF1ab/nsp15A1-B310D310delGAT---22B.1.2580.000133
ORF1ab/nsp15A1-B310D310EgaTgaA12B.1.3510.00003
ORF1ab/nsp15A1-B310D310EgaTgaG12B.1.3510.00003
ORF1ab/nsp15A1-B310D310YGatTat22B.1.36.290.001035
ORF1ab/nsp15A1-B310D310NGatAat22B.1.4990.002101
ORF1ab/nsp15A1-B310D310AgAtgCt22B.1.617.20.000008
ORF1ab/nsp15A1-B310D310NGatAat22B.1.617.20.000008
ORF1ab/nsp15A1-B310D310DgaTgaC22B.1.6210.000177
ORF1ab/nsp15A1-B310D310YGatTat22B.60.00182
ORF1ab/nsp15A1-B310D310HGatCat11A0.000387
ORF1ab/nsp15A1-B310D310delGAT---11A0.000387
ORF1ab/nsp15A1-B310D310EgaTgaG11A.20.000662
ORF1ab/nsp15A1-B310D310NGatAat11A.2.40.003367
ORF1ab/nsp15A1-B310D310IGAtATt11All0
ORF1ab/nsp15A1-B310D310KGaTAaA11All0
ORF1ab/nsp15A1-B310D310CGAtTGt11All0
ORF1ab/nsp15A1-B310D310PGAtCCt11All0
ORF1ab/nsp15A1-B310D310del2gATg--11All0
ORF1ab/nsp15A1-B310D310EgaTgaA11AY.1000.000046
ORF1ab/nsp15A1-B310D310AgAtgCt11AY.1030.000006
ORF1ab/nsp15A1-B310D310EgaTgaG11AY.1030.000006
ORF1ab/nsp15A1-B310D310EgaTgaA11AY.1100.000113
ORF1ab/nsp15A1-B310D310YGatTat11AY.1130.000142
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.1180.000063
ORF1ab/nsp15A1-B310D310YGatTat11AY.1180.000063
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.1180.000063
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.1190.000035
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.1200.000037
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.1200.000037
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.120.2.10.000498
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.190.00114
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.200.000039
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.200.000039
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.23.10.000417
ORF1ab/nsp15A1-B310D310EgaTgaG11AY.250.000006
ORF1ab/nsp15A1-B310D310VgAtgTt11AY.250.000006
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.260.000028
ORF1ab/nsp15A1-B310D310delGAT---11AY.30.00001
ORF1ab/nsp15A1-B310D310YGatTat11AY.330.000067
ORF1ab/nsp15A1-B310D310delGAT---11AY.360.000148
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.390.000025
ORF1ab/nsp15A1-B310D310EgaTgaA11AY.39.10.00004
ORF1ab/nsp15A1-B310D310VgAtgTt11AY.40.000002
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.4.20.000022
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.420.00004
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.420.00004
ORF1ab/nsp15A1-B310D310delGAT---11AY.430.000004
ORF1ab/nsp15A1-B310D310EgaTgaG11AY.430.000004
ORF1ab/nsp15A1-B310D310HGatCat11AY.430.000004
ORF1ab/nsp15A1-B310D310NGatAat11AY.440.000006
ORF1ab/nsp15A1-B310D310PGAtCCt11AY.440.000006
ORF1ab/nsp15A1-B310D310YGatTat11AY.440.000006
ORF1ab/nsp15A1-B310D310delGAT---11AY.440.000006
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.460.000104
ORF1ab/nsp15A1-B310D310YGatTat11AY.46.20.000635
ORF1ab/nsp15A1-B310D310YGatTat11AY.470.000031
ORF1ab/nsp15A1-B310D310YGatTat11AY.490.003195
ORF1ab/nsp15A1-B310D310delGAT---11AY.50.000021
ORF1ab/nsp15A1-B310D310GgAtgGt11AY.50.000021
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.50.000021
ORF1ab/nsp15A1-B310D310NGatAat11AY.5.30.000337
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.540.000095
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.590.00053
ORF1ab/nsp15A1-B310D310YGatTat11AY.60.000041
ORF1ab/nsp15A1-B310D310YGatTat11AY.690.000187
ORF1ab/nsp15A1-B310D310YGatTat11AY.710.000475
ORF1ab/nsp15A1-B310D310YGatTat11AY.90.000068
ORF1ab/nsp15A1-B310D310DgaTgaC11AY.99.10.001553
ORF1ab/nsp15A1-B310D310YGatTat11AY.99.20.000092
ORF1ab/nsp15A1-B310D310YGatTat11B.1.1.1170.009709
ORF1ab/nsp15A1-B310D310NGatAat11B.1.1.1170.009709
ORF1ab/nsp15A1-B310D310delGAT---11B.1.1.1590.004673
ORF1ab/nsp15A1-B310D310YGatTat11B.1.1.1740.003378
ORF1ab/nsp15A1-B310D310NGatAat11B.1.1.1890.001513
ORF1ab/nsp15A1-B310D310YGatTat11B.1.1.1960.005714
ORF1ab/nsp15A1-B310D310EgaTgaG11B.1.1.2050.003717
ORF1ab/nsp15A1-B310D310YGatTat11B.1.1.2940.001266
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.1.3100.015152
ORF1ab/nsp15A1-B310D310delGAT---11B.1.1.3110.000358
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.1.3160.000925
ORF1ab/nsp15A1-B310D310EgaTgaG11B.1.1.3170.000412
ORF1ab/nsp15A1-B310D310NGatAat11B.1.1.480.002874
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.1.480.002874
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.1.570.011494
ORF1ab/nsp15A1-B310D310AgAtgCt11B.1.1.70.000001
ORF1ab/nsp15A1-B310D310FGAtTTt11B.1.1.70.000001
ORF1ab/nsp15A1-B310D310KGaTAaA11B.1.1.70.000001
ORF1ab/nsp15A1-B310D310del1Gat-at11B.1.1.70.000001
ORF1ab/nsp15A1-B310D310YGatTat11B.1.1510.011111
ORF1ab/nsp15A1-B310D310EgaTgaG11B.1.1600.000031
ORF1ab/nsp15A1-B310D310delGAT---11B.1.160.70.002079
ORF1ab/nsp15A1-B310D310VgAtgTt11B.1.1770.000013
ORF1ab/nsp15A1-B310D310delGAT---11B.1.1770.000013
ORF1ab/nsp15A1-B310D310AgAtgCt11B.1.1770.000013
ORF1ab/nsp15A1-B310D310delGAT---11B.1.177.180.00116
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.177.50.001242
ORF1ab/nsp15A1-B310D310NGatAat11B.1.177.600.000218
ORF1ab/nsp15A1-B310D310EgaTgaA11B.1.177.650.000665
ORF1ab/nsp15A1-B310D310delGAT---11B.1.177.690.001484
ORF1ab/nsp15A1-B310D310VgAtgTt11B.1.177.70.000165
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.177.70.000165
ORF1ab/nsp15A1-B310D310delGAT---11B.1.177.830.001481
ORF1ab/nsp15A1-B310D310del1gaTga-11B.1.20.000009
ORF1ab/nsp15A1-B310D310VgAtgTt11B.1.20.000009
ORF1ab/nsp15A1-B310D310del2gATg--11B.1.20.000009
ORF1ab/nsp15A1-B310D310IGAtATt11B.1.20.000009
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.20.000009
ORF1ab/nsp15A1-B310D310GgAtgGt11B.1.2210.000071
ORF1ab/nsp15A1-B310D310delGAT---11B.1.230.006061
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.2400.000216
ORF1ab/nsp15A1-B310D310YGatTat11B.1.2430.00007
ORF1ab/nsp15A1-B310D310GgAtgGt11B.1.2430.00007
ORF1ab/nsp15A1-B310D310YGatTat11B.1.2560.017241
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.3560.001727
ORF1ab/nsp15A1-B310D310GgAtgGt11B.1.360.000146
ORF1ab/nsp15A1-B310D310YGatTat11B.1.3770.004566
ORF1ab/nsp15A1-B310D310GgAtgGt11B.1.4270.00005
ORF1ab/nsp15A1-B310D310YGatTat11B.1.4290.000024
ORF1ab/nsp15A1-B310D310EgaTgaA11B.1.4290.000024
ORF1ab/nsp15A1-B310D310NGatAat11B.1.4290.000024
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.4290.000024
ORF1ab/nsp15A1-B310D310EgaTgaG11B.1.5260.000024
ORF1ab/nsp15A1-B310D310delGAT---11B.1.5260.000024
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.5260.000024
ORF1ab/nsp15A1-B310D310YGatTat11B.1.5270.003704
ORF1ab/nsp15A1-B310D310YGatTat11B.1.5640.000426
ORF1ab/nsp15A1-B310D310SGAtTCt11B.1.617.20.000004
ORF1ab/nsp15A1-B310D310CGAtTGt11B.1.617.20.000004
ORF1ab/nsp15A1-B310D310delGAT---11B.1.617.20.000004
ORF1ab/nsp15A1-B310D310VgAtgTt11B.1.617.20.000004
ORF1ab/nsp15A1-B310D310FGAtTTt11B.1.617.20.000004
ORF1ab/nsp15A1-B310D310delGAT---11B.1.6200.000946
ORF1ab/nsp15A1-B310D310YGatTat11B.1.6360.006711
ORF1ab/nsp15A1-B310D310DgaTgaC11B.1.810.021277
ORF1ab/nsp15A1-B310D310YGatTat11B.1.90.006173
ORF1ab/nsp15A1-B310D310delGAT---11B.340.013699
ORF1ab/nsp15A1-B310D310YGatTat11B.6.60.000889
ORF1ab/nsp15A1-B310D310DgaTgaC11C.370.000116
ORF1ab/nsp15A1-B310D310EgaTgaG11D.20.000075
ORF1ab/nsp15A1-B310D310YGatTat11D.20.000075
ORF1ab/nsp15A1-B310D310VgAtgTt11D.20.000075
ORF1ab/nsp15A1-B310D310DgaTgaC11P.1.100.000269
ORF1ab/nsp15A1-B310D310delGAT---11P.1.150.000232
ORF1ab/nsp15A1-B310D310GgAtgGt11P.1.160.000374
ORF1ab/nsp15A1-B310D310delGAT---11P.1.70.000319
ORF1ab/nsp15A1-B310D310delGAT---11Q.80.000165