CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 308

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	308	S308S	S6760S	syn	tcC	tcT	4265	4108	0.963189	20542-20544
ORF1ab/nsp15A1-B	308	S308S	S6760S	syn	tcC	tcA	4265	156	0.0365768	20542-20544
ORF1ab/nsp15A1-B	308	S308S	S6760S	syn	tcC	tcG	4265	1	0.000234467	20542-20544
ORF1ab/nsp15A1-B	308	S308F	S6760F	nonsyn	tCc	tTc	472	472	1	20542-20544
ORF1ab/nsp15A1-B	308	S308A	S6760A	nonsyn	Tcc	Gcc	54	54	1	20542-20544
ORF1ab/nsp15A1-B	308	S308del	S6760del	del	TCC	---	52	52	1	20542-20544
ORF1ab/nsp15A1-B	308	S308P	S6760P	nonsyn	Tcc	Ccc	38	37	0.973684	20542-20544
ORF1ab/nsp15A1-B	308	S308P	S6760P	nonsyn	TcC	CcT	38	1	0.0263158	20542-20544
ORF1ab/nsp15A1-B	308	S308Y	S6760Y	nonsyn	tCc	tAc	29	28	0.965517	20542-20544
ORF1ab/nsp15A1-B	308	S308Y	S6760Y	nonsyn	tCC	tAT	29	1	0.0344828	20542-20544
ORF1ab/nsp15A1-B	308	S308T	S6760T	nonsyn	Tcc	Acc	21	20	0.952381	20542-20544
ORF1ab/nsp15A1-B	308	S308T	S6760T	nonsyn	TcC	AcT	21	1	0.047619	20542-20544
ORF1ab/nsp15A1-B	308	S308del1	S6760del1	del	tCc	t-c	10	7	0.7	20542-20544
ORF1ab/nsp15A1-B	308	S308del1	S6760del1	del	Tcc	-cc	10	1	0.1	20542-20544
ORF1ab/nsp15A1-B	308	S308del1	S6760del1	del	TcC	-cT	10	1	0.1	20542-20544
ORF1ab/nsp15A1-B	308	S308del1	S6760del1	del	tCC	t-N	10	1	0.1	20542-20544
ORF1ab/nsp15A1-B	308	S308del2	S6760del2	del	tCC	t--	4	4	1	20542-20544
ORF1ab/nsp15A1-B	308	S308I	S6760I	nonsyn	TCc	ATc	2	2	1	20542-20544
ORF1ab/nsp15A1-B	308	S308X	S6760X	nonsyn	tCC	tGA	1	1	1	20542-20544
ORF1ab/nsp15A1-B	308	S308L	S6760L	nonsyn	TCC	CTT	1	1	1	20542-20544

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4108	4265	All	0.000786
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	156	4265	All	0.00003
ORF1ab/nsp15A1-B	308	S308S	tcC	tcG	1	4265	All	0
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1755	1774	B.1.1.7	0.001571
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	19	1774	B.1.1.7	0.000017
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	472	472	All	0.00009
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	315	327	AY.4	0.00049
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	12	327	AY.4	0.000019
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	296	303	AY.3	0.002944
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	7	303	AY.3	0.00007
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	142	142	B.1.177.12	0.021541
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	130	137	B.1.617.2	0.00049
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	7	137	B.1.617.2	0.000026
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	129	129	AY.79	0.156174
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	109	118	AY.44	0.000663
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	9	118	AY.44	0.000055
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	97	97	B.1.1.7	0.000087
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	69	75	AY.103	0.000428
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	6	75	AY.103	0.000037
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	45	68	B.1.2	0.000396
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	23	68	B.1.2	0.000203
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	63	67	B.1.1	0.001143
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	4	67	B.1.1	0.000073
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	65	66	B.1	0.000595
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	66	B.1	0.000009
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	57	65	AY.25	0.000343
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	8	65	AY.25	0.000048
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	62	62	AY.16	0.023538
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	54	54	All	0.00001
ORF1ab/nsp15A1-B	308	S308del	TCC	---	52	52	All	0.00001
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	50	51	P.1	0.000788
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	51	P.1	0.000016
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	45	45	AA.8	1
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	37	38	All	0.000007
ORF1ab/nsp15A1-B	308	S308P	TcC	CcT	1	38	All	0
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	37	37	AY.4	0.000058
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	34	36	AY.43	0.000151
ORF1ab/nsp15A1-B	308	S308S	tcC	tcG	1	36	AY.43	0.000004
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	36	AY.43	0.000004
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	35	36	B.1.160	0.001092
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	36	B.1.160	0.000031
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	34	34	B.1.1.346	1
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	31	31	AY.99.2	0.002857
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	28	29	All	0.000005
ORF1ab/nsp15A1-B	308	S308Y	tCC	tAT	1	29	All	0
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	24	28	AY.61	0.002515
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	4	28	AY.61	0.000419
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	26	26	B.1.595	0.006785
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	24	24	AY.103	0.000149
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	24	24	B.1.177	0.000316
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	22	23	AY.36	0.003261
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	23	AY.36	0.000148
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	22	22	AY.4.2	0.000477
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	20	21	All	0.000004
ORF1ab/nsp15A1-B	308	S308T	TcC	AcT	1	21	All	0
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	19	21	AY.102	0.000504
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	2	21	AY.102	0.000053
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	21	21	B.1.177.82	0.010024
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	21	21	B.1.617.2	0.000079
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	19	19	B.1.2	0.000167
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	18	18	AY.73	0.011976
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	18	18	B.1.1.277	0.013657
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	17	17	AY.29	0.000268
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	16	16	B.1.1.519	0.000635
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	16	16	P.1.10	0.004312
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	14	14	A.23.1	0.009859
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	14	14	AY.119	0.000494
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	14	14	B.1.234	0.001847
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	13	14	B.1.429	0.000306
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	14	B.1.429	0.000024
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	13	13	AY.42	0.000523
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	12	12	AY.20	0.000466
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	12	12	AY.47	0.000373
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	12	12	B	0.001534
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	9	12	B.1.1.519	0.000357
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	3	12	B.1.1.519	0.000119
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	12	12	B.1.243	0.000835
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	9	12	B.1.351	0.000268
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	3	12	B.1.351	0.000089
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	12	12	B.1.526	0.000282
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	12	12	D.2	0.0009
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	11	11	AY.119	0.000388
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	10	11	AY.39	0.000247
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	11	AY.39	0.000025
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	11	11	B.1.1.214	0.00061
ORF1ab/nsp15A1-B	308	S308del	TCC	---	11	11	B.1.1.7	0.00001
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	11	11	B.1.258.14	0.010784
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	11	11	B.1.427	0.000555
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	11	11	B.1.617.2	0.000041
ORF1ab/nsp15A1-B	308	S308del1	tCc	t-c	7	10	All	0.000001
ORF1ab/nsp15A1-B	308	S308del1	Tcc	-cc	1	10	All	0
ORF1ab/nsp15A1-B	308	S308del1	tCC	t-N	1	10	All	0
ORF1ab/nsp15A1-B	308	S308del1	TcC	-cT	1	10	All	0
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	10	10	B.1.1	0.000181
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	10	10	P.1.1	0.003177
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	7	9	AY.6	0.000288
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	2	9	AY.6	0.000082
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	9	9	B.1.1.186	0.030928
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	9	9	B.1.1.221	0.090909
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	9	9	B.1.1.221	0.090909
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	6	9	B.1.221	0.000426
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	3	9	B.1.221	0.000213
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	9	9	B.1.525	0.001018
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	9	9	B.1.596	0.000784
ORF1ab/nsp15A1-B	308	S308del	TCC	---	8	8		0.444444
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	8	8	AY.26	0.000226
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	8	8	AY.33	0.000534
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	8	8	B.1.1.306	0.003507
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	8	8	B.1.366	0.039024
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	8	8	B.1.621	0.000708
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	7	7	AY.100	0.000322
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	7	7	AY.2	0.002493
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	7	7	AY.23	0.000488
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	7	7	B.1	0.000064
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	5	7	B.1.596	0.000436
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	7	B.1.596	0.000174
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	6	6	AY.44	0.000037
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	6	6	AY.5	0.000124
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	5	6	AY.75.1	0.000902
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	6	AY.75.1	0.00018
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	6	6	B.1.1.432	0.007595
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	6	6	B.1.258	0.000399
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	5	5	AY.26	0.000142
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	5	5	AY.27	0.000324
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	5	5	AY.33	0.000334
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	5	5	AY.4.5	0.000537
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	5	5	AY.9	0.000338
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	5	5	B.1	0.000046
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	5	5	B.1.1.519	0.000199
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	5	5	B.1.221	0.000355
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	5	5	B.1.241	0.004058
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	5	5	B.1.36.36	0.00301
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	5	5	B.1.369	0.001426
ORF1ab/nsp15A1-B	308	S308del2	tCC	t--	4	4	All	0.000001
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	4	AY.113	0.000427
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	4	AY.113	0.000142
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	4	4	AY.25	0.000024
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	4	4	AY.25	0.000024
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	4	4	AY.44	0.000024
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	AY.46.4	0.000658
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	AY.9.1	0.000335
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	4	AY.98	0.000237
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	4	AY.98	0.000079
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	AY.98.1	0.000194
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	4	B.1.1.28	0.000934
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	4	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	B.1.1.318	0.001207
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	B.1.1.39	0.002039
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	4	4	B.1.1.432	0.005063
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	B.1.111	0.0047
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	4	4	B.1.258	0.000266
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	4	4	B.1.265	0.005083
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	4	4	B.1.516	0.007828
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	4	4	B.1.617.1	0.000516
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	4	4	P.1	0.000063
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	4	R.1	0.00027
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	4	R.1	0.00009
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AD.2	0.000657
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	3	3	AY.102	0.00008
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AY.106	0.001005
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	308	S308del	TCC	---	3	3	AY.4	0.000005
ORF1ab/nsp15A1-B	308	S308del	TCC	---	3	3	AY.4.5	0.000322
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AY.46	0.000312
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AY.71	0.001425
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AY.75	0.000168
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AY.84	0.001312
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	3	AY.9.2	0.000073
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	3	AY.9.2	0.000037
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	AY.92	0.000862
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	3	3	AY.98	0.000237
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	3	3	AY.99.2	0.000276
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.1.216	0.002671
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.1.317	0.001235
ORF1ab/nsp15A1-B	308	S308del2	tCC	t--	3	3	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	2	3	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	308	S308P	TcC	CcT	1	3	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	3	3	B.1.160.26	0.007264
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.177.52	0.005272
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.36	0.000438
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.400	0.001287
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.404	0.003906
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	3	3	B.1.429	0.000071
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	3	3	B.1.617.1	0.000387
ORF1ab/nsp15A1-B	308	S308del1	tCc	t-c	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	B.1.9.4	0.018405
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	P.1.7	0.000958
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	3	3	P.2	0.00056
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	3	Q.8	0.00033
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	3	Q.8	0.000165
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	2	A.2.5	0.000499
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	2	A.2.5	0.000499
ORF1ab/nsp15A1-B	308	S308I	TCc	ATc	2	2	All	0
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	2	2	AY.103	0.000012
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.111	0.000366
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	2	2	AY.116.1	0.000623
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.121	0.000271
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	2	2	AY.13	0.000322
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.16	0.000759
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.16.1	0.00094
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.23	0.000139
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	2	2	AY.27	0.000129
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	2	AY.3.1	0.000085
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	2	AY.3.1	0.000085
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	2	2	AY.34	0.000194
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.34	0.000194
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	2	2	AY.62	0.000871
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.88	0.001768
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	2	2	AY.94	0.000885
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	AY.99	0.002099
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B	0.000256
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	2	2	B.1.1.1	0.000653
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.1.141	0.004024
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.1.526	0.007092
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	308	S308del1	tCC	t-N	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	308	S308del1	TcC	-cT	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	308	S308del	TCC	---	2	2	B.1.1.70	0.000682
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.177.10	0.001756
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.177.15	0.001262
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.177.81	0.000379
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.177.86	0.000367
ORF1ab/nsp15A1-B	308	S308del	TCC	---	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.206	0.001631
ORF1ab/nsp15A1-B	308	S308del	TCC	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.258.11	0.000793
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.346	0.002621
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.36.18	0.00084
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	2	2	B.1.36.31	0.003503
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.425	0.005988
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.438.1	0.000215
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	B.1.617.1	0.000258
ORF1ab/nsp15A1-B	308	S308del	TCC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	2	2	Q.3	0.00029
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	A	0.000387
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	A.2	0.000662
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	A.27	0.001656
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	AD.2	0.000219
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AL.1	0.012987
ORF1ab/nsp15A1-B	308	S308L	TCC	CTT	1	1	All	0
ORF1ab/nsp15A1-B	308	S308X	tCC	tGA	1	1	All	0
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.105	0.000643
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.108	0.001103
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.120.2	0.001285
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	308	S308del1	tCc	t-c	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.37	0.000316
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	AY.39.1.1	0.000725
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	308	S308L	TCC	CTT	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	308	S308X	tCC	tGA	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.48	0.000465
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	AY.53	0.000288
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.65	0.000533
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.7	0.000196
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.86	0.00083
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	308	S308del1	tCc	t-c	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	AZ.1	0.000867
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B	0.000128
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	308	S308del2	tCC	t--	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.12	0.007463
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.217	0.003636
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.262	0.015152
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.265	0.003155
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.266	0.012195
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.275	0.011236
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.311	0.000358
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.34	0.013158
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.348	0.000796
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.1.348	0.000796
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.374	0.002375
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.1.416	0.000905
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.434	0.000349
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	B.1.1.46	0.004367
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.49	0.017544
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.1.525	0.005464
ORF1ab/nsp15A1-B	308	S308T	TcC	AcT	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	B.1.147	0.000756
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.160.16	0.000929
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	B.1.160.26	0.002421
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.177.54	0.000606
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.177.60	0.000218
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.177.75	0.001041
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.177.87	0.000728
ORF1ab/nsp15A1-B	308	S308I	TCc	ATc	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	308	S308del1	tCc	t-c	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.210	0.002132
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	B.1.214	0.003663
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	B.1.229	0.009709
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.23	0.006061
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.258.17	0.000104
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.338	0.008621
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.36.17	0.000494
ORF1ab/nsp15A1-B	308	S308del1	Tcc	-cc	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.36.36	0.000602
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.361	0.001289
ORF1ab/nsp15A1-B	308	S308I	TCc	ATc	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	B.1.411	0.003704
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.426	0.001009
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.438.2	0.019231
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	B.1.443	0.004673
ORF1ab/nsp15A1-B	308	S308Y	tCC	tAT	1	1	B.1.446	0.02
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.448	0.002625
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.459	0.004082
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	B.1.467	0.04
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	B.1.471	0.002732
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.509	0.000866
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.564	0.000426
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	B.1.564.1	0.001577
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	308	S308T	Tcc	Acc	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	B.1.619	0.000871
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	B.1.628	0.000352
ORF1ab/nsp15A1-B	308	S308P	Tcc	Ccc	1	1	B.23	0.002924
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	B.34	0.013699
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	C.4	0.01
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	M.2	0.083333
ORF1ab/nsp15A1-B	308	S308del1	tCc	t-c	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	308	S308Y	tCc	tAc	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	308	S308S	tcC	tcA	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	308	S308A	Tcc	Gcc	1	1	P.1.17	0.000162
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	P.1.17	0.000162
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	P.1.2	0.001156
ORF1ab/nsp15A1-B	308	S308F	tCc	tTc	1	1	P.1.2	0.001156
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	P.1.5	0.076923
ORF1ab/nsp15A1-B	308	S308del	TCC	---	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	P.1.9	0.004808
ORF1ab/nsp15A1-B	308	S308S	tcC	tcT	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.