CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 302

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B302F302FF6754FsynttTttC253253120524-20526
ORF1ab/nsp15A1-B302F302delF6754deldelTTT---3434120524-20526
ORF1ab/nsp15A1-B302F302LF6754LnonsynttTttG33150.45454520524-20526
ORF1ab/nsp15A1-B302F302LF6754LnonsynTttCtt33110.33333320524-20526
ORF1ab/nsp15A1-B302F302LF6754LnonsynttTttA3370.21212120524-20526
ORF1ab/nsp15A1-B302F302VF6754VnonsynTttGtt29280.96551720524-20526
ORF1ab/nsp15A1-B302F302VF6754VnonsynTtTGtC2910.034482820524-20526
ORF1ab/nsp15A1-B302F302CF6754CnonsyntTttGt1717120524-20526
ORF1ab/nsp15A1-B302F302SF6754SnonsyntTttCt1111120524-20526
ORF1ab/nsp15A1-B302F302IF6754InonsynTttAtt540.820524-20526
ORF1ab/nsp15A1-B302F302IF6754InonsynTtTAtA510.220524-20526
ORF1ab/nsp15A1-B302F302del1F6754del1delTtt-tt22120524-20526
ORF1ab/nsp15A1-B302F302YF6754YnonsyntTTtAC11120524-20526
ORF1ab/nsp15A1-B302F302HF6754HnonsynTTTCAC11120524-20526
ORF1ab/nsp15A1-B302F302DF6754DnonsynTTtGAt11120524-20526

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B302F302FttTttC253253All0.000048
ORF1ab/nsp15A1-B302F302FttTttC8383Q.60.549669
ORF1ab/nsp15A1-B302F302FttTttC6767AY.1030.000416
ORF1ab/nsp15A1-B302F302delTTT---3434All0.000007
ORF1ab/nsp15A1-B302F302LttTttG1533All0.000003
ORF1ab/nsp15A1-B302F302LTttCtt1133All0.000002
ORF1ab/nsp15A1-B302F302LttTttA733All0.000001
ORF1ab/nsp15A1-B302F302VTttGtt2829All0.000005
ORF1ab/nsp15A1-B302F302VTtTGtC129All0
ORF1ab/nsp15A1-B302F302FttTttC2121B.1.1.3610.954545
ORF1ab/nsp15A1-B302F302CtTttGt1717All0.000003
ORF1ab/nsp15A1-B302F302VTttGtt1616AY.610.001676
ORF1ab/nsp15A1-B302F302LttTttG1313B.1.2400.002802
ORF1ab/nsp15A1-B302F302FttTttC1313B.530.152941
ORF1ab/nsp15A1-B302F302StTttCt1111All0.000002
ORF1ab/nsp15A1-B302F302delTTT---880.444444
ORF1ab/nsp15A1-B302F302FttTttC88AY.700.001668
ORF1ab/nsp15A1-B302F302delTTT---88B.1.1.70.000007
ORF1ab/nsp15A1-B302F302FttTttC77AY.40.000011
ORF1ab/nsp15A1-B302F302CtTttGt77AY.430.000031
ORF1ab/nsp15A1-B302F302FttTttC77B.1.1.70.000006
ORF1ab/nsp15A1-B302F302CtTttGt66B.1.617.20.000023
ORF1ab/nsp15A1-B302F302ITttAtt45All0.000001
ORF1ab/nsp15A1-B302F302ITtTAtA15All0
ORF1ab/nsp15A1-B302F302FttTttC55AY.430.000022
ORF1ab/nsp15A1-B302F302FttTttC55B.1.1.2610.043103
ORF1ab/nsp15A1-B302F302FttTttC55B.1.20.000044
ORF1ab/nsp15A1-B302F302FttTttC55B.1.617.20.000019
ORF1ab/nsp15A1-B302F302FttTttC44AY.30.00004
ORF1ab/nsp15A1-B302F302VTttGtt44B.1.617.20.000015
ORF1ab/nsp15A1-B302F302FttTttC44P.10.000063
ORF1ab/nsp15A1-B302F302LTttCtt23AY.30.00002
ORF1ab/nsp15A1-B302F302LttTttA13AY.30.00001
ORF1ab/nsp15A1-B302F302LttTttG13AY.40.000002
ORF1ab/nsp15A1-B302F302LTttCtt13AY.40.000002
ORF1ab/nsp15A1-B302F302LttTttA13AY.40.000002
ORF1ab/nsp15A1-B302F302FttTttC33B.1.10.000054
ORF1ab/nsp15A1-B302F302del1Ttt-tt22All0
ORF1ab/nsp15A1-B302F302StTttCt22AY.1030.000012
ORF1ab/nsp15A1-B302F302delTTT---22AY.40.000003
ORF1ab/nsp15A1-B302F302FttTttC22B.10.000018
ORF1ab/nsp15A1-B302F302LTttCtt22B.1.10.000036
ORF1ab/nsp15A1-B302F302FttTttC22B.1.1.2750.022472
ORF1ab/nsp15A1-B302F302LTttCtt22B.1.1.70.000002
ORF1ab/nsp15A1-B302F302delTTT---22B.1.20.000018
ORF1ab/nsp15A1-B302F302delTTT---22B.1.2580.000133
ORF1ab/nsp15A1-B302F302LttTttA22B.1.3060.011429
ORF1ab/nsp15A1-B302F302FttTttC22B.1.3510.000059
ORF1ab/nsp15A1-B302F302delTTT---11A0.000387
ORF1ab/nsp15A1-B302F302DTTtGAt11All0
ORF1ab/nsp15A1-B302F302HTTTCAC11All0
ORF1ab/nsp15A1-B302F302YtTTtAC11All0
ORF1ab/nsp15A1-B302F302CtTttGt11AY.1010.00049
ORF1ab/nsp15A1-B302F302FttTttC11AY.1020.000027
ORF1ab/nsp15A1-B302F302FttTttC11AY.1130.000142
ORF1ab/nsp15A1-B302F302VTttGtt11AY.130.000161
ORF1ab/nsp15A1-B302F302VTttGtt11AY.16.10.00047
ORF1ab/nsp15A1-B302F302FttTttC11AY.190.00114
ORF1ab/nsp15A1-B302F302StTttCt11AY.250.000006
ORF1ab/nsp15A1-B302F302CtTttGt11AY.250.000006
ORF1ab/nsp15A1-B302F302LTttCtt11AY.260.000028
ORF1ab/nsp15A1-B302F302LttTttA11AY.360.000148
ORF1ab/nsp15A1-B302F302delTTT---11AY.360.000148
ORF1ab/nsp15A1-B302F302LttTttG11AY.390.000025
ORF1ab/nsp15A1-B302F302StTttCt11AY.39.10.00004
ORF1ab/nsp15A1-B302F302StTttCt11AY.40.000002
ORF1ab/nsp15A1-B302F302VTttGtt11AY.40.000002
ORF1ab/nsp15A1-B302F302delTTT---11AY.4.50.000107
ORF1ab/nsp15A1-B302F302VTttGtt11AY.430.000004
ORF1ab/nsp15A1-B302F302ITttAtt11AY.440.000006
ORF1ab/nsp15A1-B302F302LttTttA11AY.440.000006
ORF1ab/nsp15A1-B302F302FttTttC11AY.440.000006
ORF1ab/nsp15A1-B302F302LTttCtt11AY.450.000122
ORF1ab/nsp15A1-B302F302CtTttGt11AY.470.000031
ORF1ab/nsp15A1-B302F302VTttGtt11AY.480.000465
ORF1ab/nsp15A1-B302F302FttTttC11AY.50.000021
ORF1ab/nsp15A1-B302F302CtTttGt11AY.740.000116
ORF1ab/nsp15A1-B302F302VTttGtt11AY.75.10.00018
ORF1ab/nsp15A1-B302F302LTttCtt11AY.790.001211
ORF1ab/nsp15A1-B302F302FttTttC11AY.98.10.000048
ORF1ab/nsp15A1-B302F302StTttCt11B.10.000009
ORF1ab/nsp15A1-B302F302del1Ttt-tt11B.10.000009
ORF1ab/nsp15A1-B302F302ITtTAtA11B.1.10.000018
ORF1ab/nsp15A1-B302F302YtTTtAC11B.1.10.000018
ORF1ab/nsp15A1-B302F302HTTTCAC11B.1.10.000018
ORF1ab/nsp15A1-B302F302VTttGtt11B.1.10.000018
ORF1ab/nsp15A1-B302F302FttTttC11B.1.1.1530.001095
ORF1ab/nsp15A1-B302F302FttTttC11B.1.1.2140.000055
ORF1ab/nsp15A1-B302F302ITttAtt11B.1.1.2160.00089
ORF1ab/nsp15A1-B302F302StTttCt11B.1.1.370.000193
ORF1ab/nsp15A1-B302F302del1Ttt-tt11B.1.1.500.000679
ORF1ab/nsp15A1-B302F302VTtTGtC11B.1.1.70.000001
ORF1ab/nsp15A1-B302F302delTTT---11B.1.1.700.000341
ORF1ab/nsp15A1-B302F302StTttCt11B.1.160.140.002119
ORF1ab/nsp15A1-B302F302FttTttC11B.1.1770.000013
ORF1ab/nsp15A1-B302F302delTTT---11B.1.177.180.00116
ORF1ab/nsp15A1-B302F302LTttCtt11B.1.177.440.000519
ORF1ab/nsp15A1-B302F302delTTT---11B.1.177.830.001481
ORF1ab/nsp15A1-B302F302ITttAtt11B.1.20.000009
ORF1ab/nsp15A1-B302F302StTttCt11B.1.20.000009
ORF1ab/nsp15A1-B302F302LttTttA11B.1.20.000009
ORF1ab/nsp15A1-B302F302StTttCt11B.1.3510.00003
ORF1ab/nsp15A1-B302F302delTTT---11B.1.5260.000024
ORF1ab/nsp15A1-B302F302DTTtGAt11B.1.617.20.000004
ORF1ab/nsp15A1-B302F302delTTT---11B.1.617.20.000004
ORF1ab/nsp15A1-B302F302delTTT---11B.1.6200.000946
ORF1ab/nsp15A1-B302F302VTttGtt11B.1.6270.00202
ORF1ab/nsp15A1-B302F302delTTT---11B.340.013699
ORF1ab/nsp15A1-B302F302StTttCt11D.20.000075
ORF1ab/nsp15A1-B302F302FttTttC11K.30.006173
ORF1ab/nsp15A1-B302F302ITttAtt11P.10.000016
ORF1ab/nsp15A1-B302F302delTTT---11P.1.150.000232
ORF1ab/nsp15A1-B302F302delTTT---11P.1.70.000319