CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 30

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B30T30TT6482TsynacTacC3022570.85099319708-19710
ORF1ab/nsp15A1-B30T30TT6482TsynacTacG302380.12582819708-19710
ORF1ab/nsp15A1-B30T30TT6482TsynacTacA30270.023178819708-19710
ORF1ab/nsp15A1-B30T30IT6482InonsynaCtaTt268268119708-19710
ORF1ab/nsp15A1-B30T30NT6482NnonsynaCtaAt2362350.99576319708-19710
ORF1ab/nsp15A1-B30T30NT6482NnonsynaCTaAC23610.0042372919708-19710
ORF1ab/nsp15A1-B30T30delT6482deldelACT---6161119708-19710
ORF1ab/nsp15A1-B30T30AT6482AnonsynActGct5252119708-19710
ORF1ab/nsp15A1-B30T30PT6482PnonsynActCct540.819708-19710
ORF1ab/nsp15A1-B30T30PT6482PnonsynAcTCcA510.219708-19710
ORF1ab/nsp15A1-B30T30del1T6482del1delaCta-t320.66666719708-19710
ORF1ab/nsp15A1-B30T30ST6482SnonsynaCTaGC310.33333319708-19710
ORF1ab/nsp15A1-B30T30ST6482SnonsynActTct310.33333319708-19710
ORF1ab/nsp15A1-B30T30del1T6482del1delacTac-310.33333319708-19710
ORF1ab/nsp15A1-B30T30ST6482SnonsynAcTTcA310.33333319708-19710
ORF1ab/nsp15A1-B30T30del2T6482del2delACt--t11119708-19710
ORF1ab/nsp15A1-B30T30VT6482VnonsynACtGTt11119708-19710

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B30T30TacTacC257302All0.000049
ORF1ab/nsp15A1-B30T30TacTacG38302All0.000007
ORF1ab/nsp15A1-B30T30TacTacA7302All0.000001
ORF1ab/nsp15A1-B30T30IaCtaTt268268All0.000051
ORF1ab/nsp15A1-B30T30NaCtaAt235236All0.000045
ORF1ab/nsp15A1-B30T30NaCTaAC1236All0
ORF1ab/nsp15A1-B30T30NaCtaAt149149B.1.1.70.000133
ORF1ab/nsp15A1-B30T30TacTacC8282AY.1020.002174
ORF1ab/nsp15A1-B30T30delACT---6161All0.000012
ORF1ab/nsp15A1-B30T30AActGct5252All0.00001
ORF1ab/nsp15A1-B30T30IaCtaTt4545B.1.4290.001059
ORF1ab/nsp15A1-B30T30TacTacC4343B.1.617.20.000162
ORF1ab/nsp15A1-B30T30IaCtaTt4242AY.200.001632
ORF1ab/nsp15A1-B30T30NaCtaAt3838AY.50.000785
ORF1ab/nsp15A1-B30T30IaCtaTt2626B.1.588.11
ORF1ab/nsp15A1-B30T30IaCtaTt2020B.1.617.20.000075
ORF1ab/nsp15A1-B30T30delACT---1919B.1.1.70.000017
ORF1ab/nsp15A1-B30T30TacTacG1717AK.10.21519
ORF1ab/nsp15A1-B30T30IaCtaTt1616AY.40.000025
ORF1ab/nsp15A1-B30T30TacTacC1515AY.1000.00069
ORF1ab/nsp15A1-B30T30IaCtaTt1515B.1.1.70.000013
ORF1ab/nsp15A1-B30T30TacTacC1314AY.1030.000081
ORF1ab/nsp15A1-B30T30TacTacA114AY.1030.000006
ORF1ab/nsp15A1-B30T30NaCtaAt1414AY.30.000139
ORF1ab/nsp15A1-B30T30IaCtaTt1414B.1.3690.003993
ORF1ab/nsp15A1-B30T30TacTacG1313AY.9.20.000477
ORF1ab/nsp15A1-B30T30TacTacC1113B.1.1.70.00001
ORF1ab/nsp15A1-B30T30TacTacG113B.1.1.70.000001
ORF1ab/nsp15A1-B30T30TacTacA113B.1.1.70.000001
ORF1ab/nsp15A1-B30T30IaCtaTt1313B.1.2580.000865
ORF1ab/nsp15A1-B30T30TacTacC1212AY.440.000073
ORF1ab/nsp15A1-B30T30AActGct1111AY.330.000735
ORF1ab/nsp15A1-B30T30IaCtaTt1111AY.440.000067
ORF1ab/nsp15A1-B30T30TacTacC1111AY.480.005116
ORF1ab/nsp15A1-B30T30NaCtaAt1111B.1.177.600.002403
ORF1ab/nsp15A1-B30T30TacTacC1010AY.140.00088
ORF1ab/nsp15A1-B30T30TacTacC58AY.40.000008
ORF1ab/nsp15A1-B30T30TacTacG28AY.40.000003
ORF1ab/nsp15A1-B30T30TacTacA18AY.40.000002
ORF1ab/nsp15A1-B30T30IaCtaTt77AY.250.000042
ORF1ab/nsp15A1-B30T30TacTacC77AY.470.000218
ORF1ab/nsp15A1-B30T30TacTacC66AY.46.40.000987
ORF1ab/nsp15A1-B30T30NaCtaAt66P.10.000095
ORF1ab/nsp15A1-B30T30PActCct45All0.000001
ORF1ab/nsp15A1-B30T30PAcTCcA15All0
ORF1ab/nsp15A1-B30T30TacTacC55AY.1200.000186
ORF1ab/nsp15A1-B30T30IaCtaTt55AY.430.000022
ORF1ab/nsp15A1-B30T30TacTacC55AY.610.000524
ORF1ab/nsp15A1-B30T30TacTacC45B.10.000037
ORF1ab/nsp15A1-B30T30TacTacG15B.10.000009
ORF1ab/nsp15A1-B30T30AActGct55B.1.1600.000156
ORF1ab/nsp15A1-B30T30AActGct55B.1.2430.000348
ORF1ab/nsp15A1-B30T30IaCtaTt44AY.1030.000025
ORF1ab/nsp15A1-B30T30IaCtaTt44AY.50.000083
ORF1ab/nsp15A1-B30T30AActGct44AY.50.000083
ORF1ab/nsp15A1-B30T30IaCtaTt44B.10.000037
ORF1ab/nsp15A1-B30T30IaCtaTt44C.350.003096
ORF1ab/nsp15A1-B30T30NaCtaAt44Q.80.00066
ORF1ab/nsp15A1-B30T30del1aCta-t23All0
ORF1ab/nsp15A1-B30T30del1acTac-13All0
ORF1ab/nsp15A1-B30T30SaCTaGC13All0
ORF1ab/nsp15A1-B30T30SAcTTcA13All0
ORF1ab/nsp15A1-B30T30SActTct13All0
ORF1ab/nsp15A1-B30T30AActGct33AY.1030.000019
ORF1ab/nsp15A1-B30T30delACT---33AY.250.000018
ORF1ab/nsp15A1-B30T30AActGct33AY.40.000005
ORF1ab/nsp15A1-B30T30TacTacC33AY.460.000312
ORF1ab/nsp15A1-B30T30delACT---33B.10.000027
ORF1ab/nsp15A1-B30T30delACT---33B.1.10.000054
ORF1ab/nsp15A1-B30T30TacTacC33B.1.1.4320.003797
ORF1ab/nsp15A1-B30T30AActGct33B.1.1.70.000003
ORF1ab/nsp15A1-B30T30IaCtaTt33B.1.177.440.001557
ORF1ab/nsp15A1-B30T30NaCtaAt33Q.10.000379
ORF1ab/nsp15A1-B30T30delACT---220.111111
ORF1ab/nsp15A1-B30T30del1aCta-t220.111111
ORF1ab/nsp15A1-B30T30PAcTCcA120.055556
ORF1ab/nsp15A1-B30T30SActTct120.055556
ORF1ab/nsp15A1-B30T30SAcTTcA120.055556
ORF1ab/nsp15A1-B30T30PActCct120.055556
ORF1ab/nsp15A1-B30T30IaCtaTt22AY.1020.000053
ORF1ab/nsp15A1-B30T30AActGct22AY.1020.000053
ORF1ab/nsp15A1-B30T30TacTacC22AY.1160.000574
ORF1ab/nsp15A1-B30T30TacTacC12AY.250.000006
ORF1ab/nsp15A1-B30T30TacTacG12AY.250.000006
ORF1ab/nsp15A1-B30T30IaCtaTt22AY.330.000134
ORF1ab/nsp15A1-B30T30IaCtaTt22AY.390.000049
ORF1ab/nsp15A1-B30T30NaCtaAt22AY.430.000009
ORF1ab/nsp15A1-B30T30delACT---22AY.430.000009
ORF1ab/nsp15A1-B30T30TacTacA12AY.430.000004
ORF1ab/nsp15A1-B30T30TacTacC12AY.430.000004
ORF1ab/nsp15A1-B30T30TacTacC22AY.9.10.000167
ORF1ab/nsp15A1-B30T30IaCtaTt22B.1.10.000036
ORF1ab/nsp15A1-B30T30delACT---22B.1.1.3150.016949
ORF1ab/nsp15A1-B30T30IaCtaTt22B.1.1770.000026
ORF1ab/nsp15A1-B30T30IaCtaTt22B.1.20.000018
ORF1ab/nsp15A1-B30T30delACT---22B.1.20.000018
ORF1ab/nsp15A1-B30T30TacTacC12B.1.3510.00003
ORF1ab/nsp15A1-B30T30TacTacG12B.1.3510.00003
ORF1ab/nsp15A1-B30T30TacTacC22B.1.4000.000858
ORF1ab/nsp15A1-B30T30IaCtaTt22B.1.4270.000101
ORF1ab/nsp15A1-B30T30NaCtaAt22B.1.4290.000047
ORF1ab/nsp15A1-B30T30IaCtaTt22B.1.5960.000174
ORF1ab/nsp15A1-B30T30AActGct22B.1.617.20.000008
ORF1ab/nsp15A1-B30T30TacTacC22P.10.000032
ORF1ab/nsp15A1-B30T30IaCtaTt22P.10.000032
ORF1ab/nsp15A1-B30T30delACT---22P.1.10.000635
ORF1ab/nsp15A1-B30T30delACT---22P.1.150.000465
ORF1ab/nsp15A1-B30T30AActGct22R.10.00018
ORF1ab/nsp15A1-B30T30TacTacA110.055556
ORF1ab/nsp15A1-B30T30delACT---11A0.000387
ORF1ab/nsp15A1-B30T30IaCtaTt11A.20.000662
ORF1ab/nsp15A1-B30T30VACtGTt11All0
ORF1ab/nsp15A1-B30T30del2ACt--t11All0
ORF1ab/nsp15A1-B30T30IaCtaTt11AY.10.000396
ORF1ab/nsp15A1-B30T30TacTacC11AY.1130.000142
ORF1ab/nsp15A1-B30T30delACT---11AY.1160.000287
ORF1ab/nsp15A1-B30T30delACT---11AY.1180.000063
ORF1ab/nsp15A1-B30T30delACT---11AY.1200.000037
ORF1ab/nsp15A1-B30T30IaCtaTt11AY.140.000088
ORF1ab/nsp15A1-B30T30TacTacC11AY.230.00007
ORF1ab/nsp15A1-B30T30NaCtaAt11AY.250.000006
ORF1ab/nsp15A1-B30T30IaCtaTt11AY.290.000016
ORF1ab/nsp15A1-B30T30del2ACt--t11AY.30.00001
ORF1ab/nsp15A1-B30T30TacTacG11AY.3.10.000085
ORF1ab/nsp15A1-B30T30AActGct11AY.390.000025
ORF1ab/nsp15A1-B30T30delACT---11AY.40.000002
ORF1ab/nsp15A1-B30T30delACT---11AY.4.50.000107
ORF1ab/nsp15A1-B30T30AActGct11AY.430.000004
ORF1ab/nsp15A1-B30T30delACT---11AY.440.000006
ORF1ab/nsp15A1-B30T30IaCtaTt11AY.450.000122
ORF1ab/nsp15A1-B30T30TacTacC11AY.620.000436
ORF1ab/nsp15A1-B30T30delACT---11AY.620.000436
ORF1ab/nsp15A1-B30T30PActCct11AY.690.000187
ORF1ab/nsp15A1-B30T30TacTacC11AY.70.000196
ORF1ab/nsp15A1-B30T30AActGct11AY.750.000056
ORF1ab/nsp15A1-B30T30TacTacC11AY.75.10.00018
ORF1ab/nsp15A1-B30T30delACT---11AY.780.001541
ORF1ab/nsp15A1-B30T30TacTacC11AY.90.000068
ORF1ab/nsp15A1-B30T30IaCtaTt11AY.9.20.000037
ORF1ab/nsp15A1-B30T30TacTacC11AY.980.000079
ORF1ab/nsp15A1-B30T30AActGct11AY.980.000079
ORF1ab/nsp15A1-B30T30TacTacC11AY.99.20.000092
ORF1ab/nsp15A1-B30T30del1acTac-11B.10.000009
ORF1ab/nsp15A1-B30T30SaCTaGC11B.10.000009
ORF1ab/nsp15A1-B30T30NaCtaAt11B.1.1.1920.002309
ORF1ab/nsp15A1-B30T30delACT---11B.1.1.3010.001179
ORF1ab/nsp15A1-B30T30delACT---11B.1.1.3060.000438
ORF1ab/nsp15A1-B30T30AActGct11B.1.1.3170.000412
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.1.3260.001761
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.1.330.000421
ORF1ab/nsp15A1-B30T30AActGct11B.1.1.4160.000905
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp15A1-B30T30delACT---11B.1.1.5190.00004
ORF1ab/nsp15A1-B30T30VACtGTt11B.1.1.70.000001
ORF1ab/nsp15A1-B30T30delACT---11B.1.1.700.000341
ORF1ab/nsp15A1-B30T30AActGct11B.1.1.830.00271
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.1050.009615
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.1280.000635
ORF1ab/nsp15A1-B30T30delACT---11B.1.1400.018868
ORF1ab/nsp15A1-B30T30delACT---11B.1.1600.000031
ORF1ab/nsp15A1-B30T30TacTacC11B.1.1770.000013
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.177.210.000076
ORF1ab/nsp15A1-B30T30delACT---11B.1.177.730.000566
ORF1ab/nsp15A1-B30T30delACT---11B.1.177.830.001481
ORF1ab/nsp15A1-B30T30PActCct11B.1.20.000009
ORF1ab/nsp15A1-B30T30AActGct11B.1.20.000009
ORF1ab/nsp15A1-B30T30TacTacA11B.1.20.000009
ORF1ab/nsp15A1-B30T30TacTacC11B.1.2210.000071
ORF1ab/nsp15A1-B30T30NaCtaAt11B.1.2390.001221
ORF1ab/nsp15A1-B30T30TacTacA11B.1.2430.00007
ORF1ab/nsp15A1-B30T30delACT---11B.1.2580.000067
ORF1ab/nsp15A1-B30T30AActGct11B.1.3240.001605
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.3510.00003
ORF1ab/nsp15A1-B30T30NaCTaAC11B.1.36.290.000517
ORF1ab/nsp15A1-B30T30TacTacC11B.1.36.310.001751
ORF1ab/nsp15A1-B30T30AActGct11B.1.4270.00005
ORF1ab/nsp15A1-B30T30NaCtaAt11B.1.466.20.000391
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.5240.001406
ORF1ab/nsp15A1-B30T30IaCtaTt11B.1.5610.000397
ORF1ab/nsp15A1-B30T30NaCtaAt11B.1.5960.000087
ORF1ab/nsp15A1-B30T30delACT---11B.1.617.20.000004
ORF1ab/nsp15A1-B30T30PActCct11B.1.617.20.000004
ORF1ab/nsp15A1-B30T30AActGct11C.370.000116
ORF1ab/nsp15A1-B30T30NaCtaAt11C.370.000116
ORF1ab/nsp15A1-B30T30IaCtaTt11D.20.000075
ORF1ab/nsp15A1-B30T30delACT---11P.10.000016
ORF1ab/nsp15A1-B30T30AActGct11P.10.000016
ORF1ab/nsp15A1-B30T30IaCtaTt11P.1.160.000374
ORF1ab/nsp15A1-B30T30TacTacG11P.20.000187
ORF1ab/nsp15A1-B30T30delACT---11Q.20.000613