CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 30 | T30T | T6482T | syn | acT | acC | 302 | 257 | 0.850993 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30T | T6482T | syn | acT | acG | 302 | 38 | 0.125828 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30T | T6482T | syn | acT | acA | 302 | 7 | 0.0231788 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30I | T6482I | nonsyn | aCt | aTt | 268 | 268 | 1 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30N | T6482N | nonsyn | aCt | aAt | 236 | 235 | 0.995763 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30N | T6482N | nonsyn | aCT | aAC | 236 | 1 | 0.00423729 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30del | T6482del | del | ACT | --- | 61 | 61 | 1 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30A | T6482A | nonsyn | Act | Gct | 52 | 52 | 1 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30P | T6482P | nonsyn | Act | Cct | 5 | 4 | 0.8 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30P | T6482P | nonsyn | AcT | CcA | 5 | 1 | 0.2 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30del1 | T6482del1 | del | aCt | a-t | 3 | 2 | 0.666667 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30S | T6482S | nonsyn | aCT | aGC | 3 | 1 | 0.333333 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30S | T6482S | nonsyn | Act | Tct | 3 | 1 | 0.333333 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30del1 | T6482del1 | del | acT | ac- | 3 | 1 | 0.333333 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30S | T6482S | nonsyn | AcT | TcA | 3 | 1 | 0.333333 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30del2 | T6482del2 | del | ACt | --t | 1 | 1 | 1 | 19708-19710 |
ORF1ab/nsp15A1-B | 30 | T30V | T6482V | nonsyn | ACt | GTt | 1 | 1 | 1 | 19708-19710 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 257 | 302 | All | 0.000049 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 38 | 302 | All | 0.000007 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 7 | 302 | All | 0.000001 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 268 | 268 | All | 0.000051 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 235 | 236 | All | 0.000045 |
ORF1ab/nsp15A1-B | 30 | T30N | aCT | aAC | 1 | 236 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 149 | 149 | B.1.1.7 | 0.000133 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 82 | 82 | AY.102 | 0.002174 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 61 | 61 | All | 0.000012 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 52 | 52 | All | 0.00001 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 45 | 45 | B.1.429 | 0.001059 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 43 | 43 | B.1.617.2 | 0.000162 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 42 | 42 | AY.20 | 0.001632 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 38 | 38 | AY.5 | 0.000785 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 26 | 26 | B.1.588.1 | 1 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 17 | 17 | AK.1 | 0.21519 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 13 | 14 | AY.103 | 0.000081 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 14 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 14 | 14 | B.1.369 | 0.003993 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 11 | 13 | B.1.1.7 | 0.00001 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 11 | 11 | AY.48 | 0.005116 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 5 | 8 | AY.4 | 0.000008 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 2 | 8 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp15A1-B | 30 | T30P | Act | Cct | 4 | 5 | All | 0.000001 |
ORF1ab/nsp15A1-B | 30 | T30P | AcT | CcA | 1 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 4 | 4 | C.35 | 0.003096 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp15A1-B | 30 | T30del1 | aCt | a-t | 2 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30del1 | acT | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30S | aCT | aGC | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30S | AcT | TcA | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30S | Act | Tct | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 30 | T30del1 | aCt | a-t | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 30 | T30P | AcT | CcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 30 | T30S | Act | Tct | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 30 | T30S | AcT | TcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 30 | T30P | Act | Cct | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp15A1-B | 30 | T30V | ACt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30del2 | ACt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 30 | T30del2 | ACt | --t | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 30 | T30P | Act | Cct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 30 | T30del1 | acT | ac- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30S | aCT | aGC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 30 | T30V | ACt | GTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 30 | T30P | Act | Cct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 30 | T30N | aCT | aAC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acC | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 30 | T30P | Act | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 30 | T30N | aCt | aAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 30 | T30A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 30 | T30I | aCt | aTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp15A1-B | 30 | T30T | acT | acG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 30 | T30del | ACT | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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