CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 285 | T285I | T6737I | nonsyn | aCa | aTa | 1143 | 1143 | 1 | 20473-20475 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1143 | 1143 | All | 0.000219 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 212 | 212 | B.1.1.7 | 0.00019 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 111 | 111 | B.1.1.148 | 0.973684 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 78 | 78 | B.1.1.118 | 0.795918 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 73 | 73 | B.1.2 | 0.000643 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 72 | 72 | B.1.1 | 0.001306 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 67 | 67 | AY.4 | 0.000104 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 59 | 59 | B.1.1.268 | 0.880597 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 52 | 52 | B.1 | 0.000476 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 41 | 41 | B.1.427 | 0.00207 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 36 | 36 | AY.25 | 0.000217 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 34 | 34 | AY.46 | 0.003539 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 30 | 30 | B.1.1.398 | 0.096774 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 12 | 12 | B.1.466.2 | 0.004695 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 11 | 11 | B.1.1.189 | 0.016641 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | B.1.1.157 | 0.004566 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | B.1.435 | 0.056818 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | AY.83 | 0.006897 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.1.334 | 0.032787 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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