CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 285 | T285I | T6737I | nonsyn | aCa | aTa | 1143 | 1143 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285T | T6737T | syn | acA | acG | 258 | 237 | 0.918605 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285T | T6737T | syn | acA | acT | 258 | 13 | 0.0503876 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285T | T6737T | syn | acA | acC | 258 | 8 | 0.0310078 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285A | T6737A | nonsyn | Aca | Gca | 255 | 255 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285K | T6737K | nonsyn | aCa | aAa | 80 | 80 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285del | T6737del | del | ACA | --- | 71 | 71 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285P | T6737P | nonsyn | Aca | Cca | 20 | 20 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285R | T6737R | nonsyn | aCa | aGa | 10 | 10 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285S | T6737S | nonsyn | Aca | Tca | 6 | 5 | 0.833333 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285S | T6737S | nonsyn | aCA | aGT | 6 | 1 | 0.166667 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285N | T6737N | nonsyn | aCA | aAC | 2 | 1 | 0.5 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285del2 | T6737del2 | del | aCA | a-- | 2 | 1 | 0.5 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285del2 | T6737del2 | del | ACA | --R | 2 | 1 | 0.5 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285N | T6737N | nonsyn | aCA | aAT | 2 | 1 | 0.5 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285E | T6737E | nonsyn | ACa | GAa | 1 | 1 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285D | T6737D | nonsyn | ACA | GAC | 1 | 1 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285del1 | T6737del1 | del | acA | ac- | 1 | 1 | 1 | 20473-20475 |
ORF1ab/nsp15A1-B | 285 | T285X | T6737X | nonsyn | ACA | TAG | 1 | 1 | 1 | 20473-20475 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1143 | 1143 | All | 0.000219 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 237 | 258 | All | 0.000045 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 13 | 258 | All | 0.000002 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 8 | 258 | All | 0.000002 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 255 | 255 | All | 0.000049 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 212 | 212 | B.1.1.7 | 0.00019 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 111 | 111 | B.1.1.148 | 0.973684 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 94 | 94 | AY.39 | 0.002323 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 80 | 80 | All | 0.000015 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 78 | 78 | B.1.1.118 | 0.795918 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 73 | 73 | B.1.2 | 0.000643 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 72 | 72 | B.1.1 | 0.001306 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 71 | 71 | All | 0.000014 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 67 | 67 | AY.4 | 0.000104 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 59 | 59 | B.1.1.268 | 0.880597 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 52 | 52 | B.1 | 0.000476 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 41 | 41 | B.1.427 | 0.00207 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 36 | 36 | AY.25 | 0.000217 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 34 | 34 | AY.46 | 0.003539 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 33 | 33 | AY.4 | 0.000051 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 33 | 33 | AY.4 | 0.000051 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 30 | 30 | B.1.1.398 | 0.096774 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 21 | 21 | AY.3 | 0.000209 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 20 | 20 | All | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 17 | 17 | AY.121 | 0.0023 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 15 | 16 | B.1.1.7 | 0.000013 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 16 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 12 | 12 | B.1.466.2 | 0.004695 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 11 | 11 | B.1.1.189 | 0.016641 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 11 | 11 | B.1.36.18 | 0.004622 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 10 | 10 | B.1.371 | 0.011223 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 7 | 7 | AY.101 | 0.003433 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp15A1-B | 285 | T285S | Aca | Tca | 5 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 285 | T285S | aCA | aGT | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | B.1.1.157 | 0.004566 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 5 | 5 | B.1.435 | 0.056818 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | AY.83 | 0.006897 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 3 | 3 | 0.166667 | |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 285 | T285N | aCA | aAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 285 | T285N | aCA | aAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 285 | T285del2 | aCA | a-- | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285N | aCA | aAT | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285N | aCA | aAC | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285del2 | ACA | --R | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 2 | B | 0.000128 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 1 | 2 | B | 0.000128 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.1.334 | 0.032787 |
ORF1ab/nsp15A1-B | 285 | T285S | Aca | Tca | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 285 | T285S | aCA | aGT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp15A1-B | 285 | T285D | ACA | GAC | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285E | ACa | GAa | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285X | ACA | TAG | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285del1 | acA | ac- | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 285 | T285S | Aca | Tca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285del2 | ACA | --R | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 285 | T285del1 | acA | ac- | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 285 | T285D | ACA | GAC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285S | Aca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285S | Aca | Tca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp15A1-B | 285 | T285X | ACA | TAG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp15A1-B | 285 | T285del2 | aCA | a-- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 285 | T285K | aCa | aAa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 285 | T285E | ACa | GAa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 285 | T285R | aCa | aGa | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 285 | T285T | acA | acG | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 285 | T285S | Aca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp15A1-B | 285 | T285P | Aca | Cca | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 285 | T285del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 285 | T285I | aCa | aTa | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp15A1-B | 285 | T285A | Aca | Gca | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|