CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 277 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	277	N277N	N6729N	syn	aaC	aaT	29308	29308	1	20449-20451

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	29308	29308	All	0.005606
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	10259	10259	AY.25	0.061706
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6723	6723	B.1.258	0.447395
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3388	3388	AY.4	0.005273
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2476	2476	B.1.258.11	0.981371
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	818	818	B.1.617.2	0.00308
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	763	763	AY.120	0.028367
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	495	495	B.1.1.7	0.000443
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	420	420	AY.44	0.002556
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	403	403	AY.9	0.027241
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	288	288	B.1.2	0.002536
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	199	199	B.1.258.9	0.995
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	181	181	AY.34	0.017551
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	176	176	AY.43	0.00078
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	175	175	P.1	0.002757
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	140	140	B.1.258.19	0.992908
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	129	129	AY.103	0.000801
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	129	129	B.1.258.21	1
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	116	116	AY.54	0.01106
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	116	116	B.1.351	0.003448
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	115	115	B.1.258.12	0.905512
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	113	113	B.1	0.001035
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	98	98	AY.53	0.028177
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	93	93	AY.98	0.007347
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	87	87	B.1.258.10	0.988636
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	63	63	B.1.258.20	1
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	61	61	B.1.160	0.001902
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	53	53	AZ.1	0.045967
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	52	52	B.1.526	0.001222
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	49	49	B.1.243	0.00341
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	43	43	AY.33	0.002871
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	43	43	AY.39.1	0.001703
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	41	41	AY.3	0.000408
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	39	39	AY.4.2	0.000846
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	37	37	B.1.1	0.000671
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	36	36	AY.102	0.000955
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	36	36	B.1.177.10	0.031607
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	34	34	B.1.177	0.000448
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	30	30	AY.39	0.000741
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	23	23	B.1.1.348	0.018312
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	20	20	AY.100	0.00092
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	19	19	AY.41	0.005585
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	19	19	B.1.1.519	0.000755
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	17	17	AY.3.1	0.001449
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	17	17	AY.5	0.000351
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	17	17	AY.92	0.004884
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	17	17	B.1.621	0.001505
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	16	16	B.1.627	0.032323
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	15	15	AY.47	0.000467
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	14	14	AY.119	0.000494
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	14	14	AY.51	0.012727
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	14	14	B.1.199	0.057851
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	14	14	B.1.404	0.018229
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	13	13	B.1.1.317	0.005352
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	12	12	AY.20	0.000466
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	12	12	AY.7	0.002352
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	12	12	B.1.429	0.000282
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	11	11	AY.117	0.00093
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	11	11	B.1.258.14	0.010784
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	11	11	C.37	0.001277
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	10	10	Q.1	0.001263
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	9	9	B.1.231	0.290323
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	9	9	P.1.14	0.00043
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	9	9	P.1.7	0.002874
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	8	8	A	0.003096
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	8	8	AY.23	0.000558
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	8	8	AY.32	0.00426
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	8	8	AY.5.4	0.002214
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	8	8	AY.69	0.001493
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	8	8	B.1.427	0.000404
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	7	7	AY.26	0.000198
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	7	7	AY.46	0.000729
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	7	7	B.1.177.79	0.016393
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	7	7	B.1.349	0.005004
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	7	7	B.1.400	0.003003
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6	6	AY.30	0.002374
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6	6	AY.42	0.000241
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6	6	AY.93	0.001638
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6	6	B	0.000767
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6	6	B.1.258.17	0.000624
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	6	6	B.1.619	0.005226
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	AY.114	0.001156
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	AY.29	0.000079
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	AY.45	0.000608
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	AY.96	0.010373
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	B.1.1.222	0.00102
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	B.1.177.57	0.001405
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	B.1.36	0.00073
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	L.3	0.01773
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	5	5	Q.3	0.000725
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	AY.118	0.000251
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	AY.120.1	0.001284
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	AY.13	0.000644
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	AY.14	0.000352
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	B.1.1.153	0.004381
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	B.1.1.28	0.001245
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	B.1.1.358	0.137931
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	B.1.234	0.000528
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	B.1.311	0.001098
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	4	4	D.2	0.0003
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.104	0.005952
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.113	0.000427
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.4.2.1	0.000447
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.46.6	0.000217
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.57	0.001969
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.7.2	0.001678
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.75	0.000168
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	AY.82	0.004071
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.1.216	0.002671
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.1.312	0.005736
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.1.70	0.001023
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.177.6	0.00293
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.177.86	0.00055
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.279	0.001541
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.459	0.012245
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.499	0.003151
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.541	0.013274
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.558	0.013699
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.560	0.013889
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.596	0.000261
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	B.1.617.1	0.000387
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	3	3	P.2	0.00056
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	A.2.5	0.000998
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AD.2	0.000438
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AE.8	0.000978
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.110	0.000225
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.111	0.000366
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.116	0.000574
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.27	0.000129
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.35	0.000466
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.36	0.000296
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.46.4	0.000329
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.67	0.000929
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.74	0.000231
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.77	0.002255
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	AY.98.1	0.000097
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.1.214	0.000111
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.1.231	0.006192
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.1.25	0.001137
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.1.318	0.000604
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.1.326	0.003521
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.1.50	0.001358
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.160.27	0.030303
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.177.32	0.002699
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.177.62	0.002384
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.221	0.000142
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.258.24	0.021505
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.258.6	0.039216
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.265	0.002541
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.351.2	0.000605
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.369	0.00057
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.411	0.007407
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.426	0.002018
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.428	0.002041
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.525	0.000226
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	B.1.576	0.001813
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	P.1.6	0.003891
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	2	2	P.3	0.00319
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	A.2	0.000662
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	A.22	0.066667
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AE.4	0.043478
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.1	0.000396
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.105	0.000643
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.4.4	0.000409
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.40	0.000964
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.46.1	0.001027
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.60	0.000938
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.72	0.001361
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.80	0.001129
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.88	0.000884
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.219	0.005
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.284	0.000107
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.34	0.013158
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.349	0.010309
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.369	0.000446
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.402	0.011111
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.432	0.001266
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.442	0.018519
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.464	0.001473
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.521	0.005348
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.1.63	0.000386
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.111	0.001175
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.147	0.000756
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.149	0.003425
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.158	0.02381
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.177.21	0.000076
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.177.44	0.000519
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.177.73	0.000566
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.218	0.005155
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.222	0.001692
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.236	0.002053
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.237	0.004975
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.242	0.018868
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.258.15	0.018868
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.258.16	0.001637
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.258.22	0.002667
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.326	0.007576
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.361	0.001289
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.406	0.006061
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.436	0.001029
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.456	0.003268
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.533	0.009615
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.564	0.000426
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.564.1	0.001577
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.580	0.004065
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.588	0.00091
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.596.1	0.009346
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.600	0.005848
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.626	0.005714
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.633	0.041667
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.634	0.003425
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.31	0.003731
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	B.55	0.00295
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	C.30	0.001727
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	C.36.2	0.034483
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	P.1.9	0.004808
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	Q.2	0.000613
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	Q.4	0.000455
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	W.4	0.001351
ORF1ab/nsp15A1-B	277	N277N	aaC	aaT	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.