CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 277

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B277N277NN6729NsynaaCaaT2930829308120449-20451
ORF1ab/nsp15A1-B277N277SN6729SnonsynaAcaGc150150120449-20451
ORF1ab/nsp15A1-B277N277TN6729TnonsynaAcaCc95940.98947420449-20451
ORF1ab/nsp15A1-B277N277TN6729TnonsynaACaCT9510.010526320449-20451
ORF1ab/nsp15A1-B277N277delN6729deldelAAC---5252120449-20451
ORF1ab/nsp15A1-B277N277DN6729DnonsynAacGac5252120449-20451
ORF1ab/nsp15A1-B277N277YN6729YnonsynAacTac2323120449-20451
ORF1ab/nsp15A1-B277N277KN6729KnonsynaaCaaA1580.53333320449-20451
ORF1ab/nsp15A1-B277N277KN6729KnonsynaaCaaG1570.46666720449-20451
ORF1ab/nsp15A1-B277N277IN6729InonsynaAcaTc88120449-20451
ORF1ab/nsp15A1-B277N277RN6729RnonsynaACaGG77120449-20451
ORF1ab/nsp15A1-B277N277HN6729HnonsynAacCac44120449-20451
ORF1ab/nsp15A1-B277N277XN6729XnonsynAaCTaG11120449-20451
ORF1ab/nsp15A1-B277N277EN6729EnonsynAaCGaA11120449-20451
ORF1ab/nsp15A1-B277N277LN6729LnonsynAACCTT11120449-20451
ORF1ab/nsp15A1-B277N277FN6729FnonsynAAcTTc11120449-20451

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B277N277NaaCaaT2930829308All0.005606
ORF1ab/nsp15A1-B277N277NaaCaaT1025910259AY.250.061706
ORF1ab/nsp15A1-B277N277NaaCaaT67236723B.1.2580.447395
ORF1ab/nsp15A1-B277N277NaaCaaT33883388AY.40.005273
ORF1ab/nsp15A1-B277N277NaaCaaT24762476B.1.258.110.981371
ORF1ab/nsp15A1-B277N277NaaCaaT818818B.1.617.20.00308
ORF1ab/nsp15A1-B277N277NaaCaaT763763AY.1200.028367
ORF1ab/nsp15A1-B277N277NaaCaaT495495B.1.1.70.000443
ORF1ab/nsp15A1-B277N277NaaCaaT420420AY.440.002556
ORF1ab/nsp15A1-B277N277NaaCaaT403403AY.90.027241
ORF1ab/nsp15A1-B277N277NaaCaaT288288B.1.20.002536
ORF1ab/nsp15A1-B277N277NaaCaaT199199B.1.258.90.995
ORF1ab/nsp15A1-B277N277NaaCaaT181181AY.340.017551
ORF1ab/nsp15A1-B277N277NaaCaaT176176AY.430.00078
ORF1ab/nsp15A1-B277N277NaaCaaT175175P.10.002757
ORF1ab/nsp15A1-B277N277SaAcaGc150150All0.000029
ORF1ab/nsp15A1-B277N277NaaCaaT140140B.1.258.190.992908
ORF1ab/nsp15A1-B277N277NaaCaaT129129AY.1030.000801
ORF1ab/nsp15A1-B277N277NaaCaaT129129B.1.258.211
ORF1ab/nsp15A1-B277N277NaaCaaT116116AY.540.01106
ORF1ab/nsp15A1-B277N277NaaCaaT116116B.1.3510.003448
ORF1ab/nsp15A1-B277N277NaaCaaT115115B.1.258.120.905512
ORF1ab/nsp15A1-B277N277NaaCaaT113113B.10.001035
ORF1ab/nsp15A1-B277N277NaaCaaT9898AY.530.028177
ORF1ab/nsp15A1-B277N277TaAcaCc9495All0.000018
ORF1ab/nsp15A1-B277N277TaACaCT195All0
ORF1ab/nsp15A1-B277N277NaaCaaT9393AY.980.007347
ORF1ab/nsp15A1-B277N277NaaCaaT8787B.1.258.100.988636
ORF1ab/nsp15A1-B277N277SaAcaGc8080AY.40.000125
ORF1ab/nsp15A1-B277N277NaaCaaT6363B.1.258.201
ORF1ab/nsp15A1-B277N277NaaCaaT6161B.1.1600.001902
ORF1ab/nsp15A1-B277N277NaaCaaT5353AZ.10.045967
ORF1ab/nsp15A1-B277N277delAAC---5252All0.00001
ORF1ab/nsp15A1-B277N277DAacGac5252All0.00001
ORF1ab/nsp15A1-B277N277NaaCaaT5252B.1.5260.001222
ORF1ab/nsp15A1-B277N277NaaCaaT4949B.1.2430.00341
ORF1ab/nsp15A1-B277N277NaaCaaT4343AY.330.002871
ORF1ab/nsp15A1-B277N277NaaCaaT4343AY.39.10.001703
ORF1ab/nsp15A1-B277N277NaaCaaT4141AY.30.000408
ORF1ab/nsp15A1-B277N277NaaCaaT3939AY.4.20.000846
ORF1ab/nsp15A1-B277N277NaaCaaT3737B.1.10.000671
ORF1ab/nsp15A1-B277N277NaaCaaT3636AY.1020.000955
ORF1ab/nsp15A1-B277N277NaaCaaT3636B.1.177.100.031607
ORF1ab/nsp15A1-B277N277NaaCaaT3434B.1.1770.000448
ORF1ab/nsp15A1-B277N277NaaCaaT3030AY.390.000741
ORF1ab/nsp15A1-B277N277TaAcaCc2424B.1.6020.156863
ORF1ab/nsp15A1-B277N277YAacTac2323All0.000004
ORF1ab/nsp15A1-B277N277NaaCaaT2323B.1.1.3480.018312
ORF1ab/nsp15A1-B277N277NaaCaaT2020AY.1000.00092
ORF1ab/nsp15A1-B277N277DAacGac2020B.1.1.70.000018
ORF1ab/nsp15A1-B277N277NaaCaaT1919AY.410.005585
ORF1ab/nsp15A1-B277N277NaaCaaT1919B.1.1.5190.000755
ORF1ab/nsp15A1-B277N277NaaCaaT1717AY.3.10.001449
ORF1ab/nsp15A1-B277N277NaaCaaT1717AY.50.000351
ORF1ab/nsp15A1-B277N277NaaCaaT1717AY.920.004884
ORF1ab/nsp15A1-B277N277NaaCaaT1717B.1.6210.001505
ORF1ab/nsp15A1-B277N277TaAcaCc1616AY.30.000159
ORF1ab/nsp15A1-B277N277NaaCaaT1616B.1.6270.032323
ORF1ab/nsp15A1-B277N277KaaCaaA815All0.000002
ORF1ab/nsp15A1-B277N277KaaCaaG715All0.000001
ORF1ab/nsp15A1-B277N277NaaCaaT1515AY.470.000467
ORF1ab/nsp15A1-B277N277TaAcaCc1515B.1.1.70.000013
ORF1ab/nsp15A1-B277N277NaaCaaT1414AY.1190.000494
ORF1ab/nsp15A1-B277N277NaaCaaT1414AY.510.012727
ORF1ab/nsp15A1-B277N277NaaCaaT1414B.1.1990.057851
ORF1ab/nsp15A1-B277N277NaaCaaT1414B.1.4040.018229
ORF1ab/nsp15A1-B277N277NaaCaaT1313B.1.1.3170.005352
ORF1ab/nsp15A1-B277N277YAacTac1313B.1.617.20.000049
ORF1ab/nsp15A1-B277N277NaaCaaT1212AY.200.000466
ORF1ab/nsp15A1-B277N277NaaCaaT1212AY.70.002352
ORF1ab/nsp15A1-B277N277NaaCaaT1212B.1.4290.000282
ORF1ab/nsp15A1-B277N277NaaCaaT1111AY.1170.00093
ORF1ab/nsp15A1-B277N277SaAcaGc1111B.1.1.70.00001
ORF1ab/nsp15A1-B277N277NaaCaaT1111B.1.258.140.010784
ORF1ab/nsp15A1-B277N277NaaCaaT1111C.370.001277
ORF1ab/nsp15A1-B277N277delAAC---1010B.1.1.70.000009
ORF1ab/nsp15A1-B277N277NaaCaaT1010Q.10.001263
ORF1ab/nsp15A1-B277N277NaaCaaT99B.1.2310.290323
ORF1ab/nsp15A1-B277N277NaaCaaT99P.1.140.00043
ORF1ab/nsp15A1-B277N277NaaCaaT99P.1.70.002874
ORF1ab/nsp15A1-B277N277delAAC---880.444444
ORF1ab/nsp15A1-B277N277NaaCaaT88A0.003096
ORF1ab/nsp15A1-B277N277IaAcaTc88All0.000002
ORF1ab/nsp15A1-B277N277NaaCaaT88AY.230.000558
ORF1ab/nsp15A1-B277N277NaaCaaT88AY.320.00426
ORF1ab/nsp15A1-B277N277NaaCaaT88AY.5.40.002214
ORF1ab/nsp15A1-B277N277NaaCaaT88AY.690.001493
ORF1ab/nsp15A1-B277N277TaAcaCc88B.10.000073
ORF1ab/nsp15A1-B277N277NaaCaaT88B.1.4270.000404
ORF1ab/nsp15A1-B277N277SaAcaGc88P.10.000126
ORF1ab/nsp15A1-B277N277SaAcaGc88P.1.40.007812
ORF1ab/nsp15A1-B277N277RaACaGG77All0.000001
ORF1ab/nsp15A1-B277N277NaaCaaT77AY.260.000198
ORF1ab/nsp15A1-B277N277NaaCaaT77AY.460.000729
ORF1ab/nsp15A1-B277N277NaaCaaT77B.1.177.790.016393
ORF1ab/nsp15A1-B277N277NaaCaaT77B.1.3490.005004
ORF1ab/nsp15A1-B277N277NaaCaaT77B.1.4000.003003
ORF1ab/nsp15A1-B277N277TaAcaCc66AY.1030.000037
ORF1ab/nsp15A1-B277N277NaaCaaT66AY.300.002374
ORF1ab/nsp15A1-B277N277NaaCaaT66AY.420.000241
ORF1ab/nsp15A1-B277N277NaaCaaT66AY.930.001638
ORF1ab/nsp15A1-B277N277NaaCaaT66B0.000767
ORF1ab/nsp15A1-B277N277NaaCaaT66B.1.258.170.000624
ORF1ab/nsp15A1-B277N277NaaCaaT66B.1.6190.005226
ORF1ab/nsp15A1-B277N277DAacGac55AY.1000.00023
ORF1ab/nsp15A1-B277N277NaaCaaT55AY.1140.001156
ORF1ab/nsp15A1-B277N277NaaCaaT55AY.290.000079
ORF1ab/nsp15A1-B277N277SaAcaGc55AY.420.000201
ORF1ab/nsp15A1-B277N277NaaCaaT55AY.450.000608
ORF1ab/nsp15A1-B277N277NaaCaaT55AY.960.010373
ORF1ab/nsp15A1-B277N277SaAcaGc55B0.000639
ORF1ab/nsp15A1-B277N277KaaCaaA35B.10.000027
ORF1ab/nsp15A1-B277N277KaaCaaG25B.10.000018
ORF1ab/nsp15A1-B277N277NaaCaaT55B.1.1.2220.00102
ORF1ab/nsp15A1-B277N277NaaCaaT55B.1.177.570.001405
ORF1ab/nsp15A1-B277N277NaaCaaT55B.1.360.00073
ORF1ab/nsp15A1-B277N277NaaCaaT55L.30.01773
ORF1ab/nsp15A1-B277N277NaaCaaT55Q.30.000725
ORF1ab/nsp15A1-B277N277HAacCac44All0.000001
ORF1ab/nsp15A1-B277N277NaaCaaT44AY.1180.000251
ORF1ab/nsp15A1-B277N277NaaCaaT44AY.120.10.001284
ORF1ab/nsp15A1-B277N277NaaCaaT44AY.130.000644
ORF1ab/nsp15A1-B277N277NaaCaaT44AY.140.000352
ORF1ab/nsp15A1-B277N277delAAC---44AY.430.000018
ORF1ab/nsp15A1-B277N277delAAC---44AY.590.002119
ORF1ab/nsp15A1-B277N277NaaCaaT44B.1.1.1530.004381
ORF1ab/nsp15A1-B277N277NaaCaaT44B.1.1.280.001245
ORF1ab/nsp15A1-B277N277YAacTac44B.1.1.3060.001754
ORF1ab/nsp15A1-B277N277NaaCaaT44B.1.1.3580.137931
ORF1ab/nsp15A1-B277N277NaaCaaT44B.1.2340.000528
ORF1ab/nsp15A1-B277N277NaaCaaT44B.1.3110.001098
ORF1ab/nsp15A1-B277N277SaAcaGc44B.1.617.20.000015
ORF1ab/nsp15A1-B277N277NaaCaaT44D.20.0003
ORF1ab/nsp15A1-B277N277YAacTac33A.23.10.002113
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.1040.005952
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.1130.000427
ORF1ab/nsp15A1-B277N277DAacGac33AY.260.000085
ORF1ab/nsp15A1-B277N277TaAcaCc33AY.40.000005
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.4.2.10.000447
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.46.60.000217
ORF1ab/nsp15A1-B277N277TaAcaCc33AY.50.000062
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.570.001969
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.7.20.001678
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.750.000168
ORF1ab/nsp15A1-B277N277NaaCaaT33AY.820.004071
ORF1ab/nsp15A1-B277N277KaaCaaG33B0.000383
ORF1ab/nsp15A1-B277N277RaACaGG33B0.000383
ORF1ab/nsp15A1-B277N277SaAcaGc33B.10.000027
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.1.2160.002671
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.1.3120.005736
ORF1ab/nsp15A1-B277N277DAacGac33B.1.1.5190.000119
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.1.700.001023
ORF1ab/nsp15A1-B277N277DAacGac33B.1.177.320.004049
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.177.60.00293
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.177.860.00055
ORF1ab/nsp15A1-B277N277delAAC---33B.1.2580.0002
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.2790.001541
ORF1ab/nsp15A1-B277N277SaAcaGc33B.1.3510.000089
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.4590.012245
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.4990.003151
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.5410.013274
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.5580.013699
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.5600.013889
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.5960.000261
ORF1ab/nsp15A1-B277N277NaaCaaT33B.1.617.10.000387
ORF1ab/nsp15A1-B277N277TaAcaCc33B.1.617.20.000011
ORF1ab/nsp15A1-B277N277NaaCaaT33P.20.00056
ORF1ab/nsp15A1-B277N277SaAcaGc22A0.000774
ORF1ab/nsp15A1-B277N277RaACaGG22A0.000774
ORF1ab/nsp15A1-B277N277NaaCaaT22A.2.50.000998
ORF1ab/nsp15A1-B277N277NaaCaaT22AD.20.000438
ORF1ab/nsp15A1-B277N277NaaCaaT22AE.80.000978
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.1100.000225
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.1110.000366
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.1160.000574
ORF1ab/nsp15A1-B277N277SaAcaGc22AY.250.000012
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.270.000129
ORF1ab/nsp15A1-B277N277DAacGac22AY.290.000032
ORF1ab/nsp15A1-B277N277TaAcaCc22AY.330.000134
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.350.000466
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.360.000296
ORF1ab/nsp15A1-B277N277delAAC---22AY.40.000003
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.46.40.000329
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.670.000929
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.740.000231
ORF1ab/nsp15A1-B277N277SaAcaGc22AY.75.10.000361
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.770.002255
ORF1ab/nsp15A1-B277N277NaaCaaT22AY.98.10.000097
ORF1ab/nsp15A1-B277N277RaACaGG22B.10.000018
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.1.2140.000111
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.1.2310.006192
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.1.250.001137
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.1.3180.000604
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.1.3260.003521
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.1.500.001358
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.160.270.030303
ORF1ab/nsp15A1-B277N277SaAcaGc22B.1.1770.000026
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.177.320.002699
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.177.620.002384
ORF1ab/nsp15A1-B277N277delAAC---22B.1.20.000018
ORF1ab/nsp15A1-B277N277DAacGac22B.1.20.000018
ORF1ab/nsp15A1-B277N277TaAcaCc22B.1.20.000018
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.2210.000142
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.258.240.021505
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.258.60.039216
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.2650.002541
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.351.20.000605
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.3690.00057
ORF1ab/nsp15A1-B277N277SaAcaGc22B.1.4040.002604
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.4110.007407
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.4260.002018
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.4280.002041
ORF1ab/nsp15A1-B277N277SaAcaGc22B.1.4290.000047
ORF1ab/nsp15A1-B277N277delAAC---22B.1.5170.000854
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.5250.000226
ORF1ab/nsp15A1-B277N277NaaCaaT22B.1.5760.001813
ORF1ab/nsp15A1-B277N277DAacGac22P.10.000032
ORF1ab/nsp15A1-B277N277delAAC---22P.1.150.000465
ORF1ab/nsp15A1-B277N277NaaCaaT22P.1.60.003891
ORF1ab/nsp15A1-B277N277NaaCaaT22P.30.00319
ORF1ab/nsp15A1-B277N277KaaCaaA110.055556
ORF1ab/nsp15A1-B277N277KaaCaaG11A0.000387
ORF1ab/nsp15A1-B277N277NaaCaaT11A.20.000662
ORF1ab/nsp15A1-B277N277delAAC---11A.2.40.003367
ORF1ab/nsp15A1-B277N277NaaCaaT11A.220.066667
ORF1ab/nsp15A1-B277N277NaaCaaT11AE.40.043478
ORF1ab/nsp15A1-B277N277XAaCTaG11All0
ORF1ab/nsp15A1-B277N277EAaCGaA11All0
ORF1ab/nsp15A1-B277N277LAACCTT11All0
ORF1ab/nsp15A1-B277N277FAAcTTc11All0
ORF1ab/nsp15A1-B277N277NaaCaaT11AY.10.000396
ORF1ab/nsp15A1-B277N277NaaCaaT11AY.100.00053
ORF1ab/nsp15A1-B277N277SaAcaGc11AY.1000.000046
ORF1ab/nsp15A1-B277N277NaaCaaT11AY.1010.00049
ORF1ab/nsp15A1-B277N277SaAcaGc11AY.1020.000027
ORF1ab/nsp15A1-B277N277DAacGac11AY.1020.000027
ORF1ab/nsp15A1-B277N277IaAcaTc11AY.1030.000006
ORF1ab/nsp15A1-B277N277NaaCaaT11AY.1050.000643
ORF1ab/nsp15A1-B277N277SaAcaGc11AY.1110.000183
ORF1ab/nsp15A1-B277N277TaAcaCc11AY.1190.000035
ORF1ab/nsp15A1-B277N277TaAcaCc11AY.230.00007
ORF1ab/nsp15A1-B277N277TaAcaCc11AY.240.000431
ORF1ab/nsp15A1-B277N277DAacGac11AY.250.000006
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